Wall clock time and date at job start Tue Mar 31 2020 19:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 N 1.46495 * 109.47102 * 119.99750 * 2 1 3 5 5 S 1.65592 * 120.00392 * 266.34593 * 4 2 1 6 6 O 1.42104 * 106.40511 * 177.99623 * 5 4 2 7 7 O 1.42104 * 106.40262 * 310.91261 * 5 4 2 8 8 C 1.76200 * 107.21746 * 64.45197 * 5 4 2 9 9 C 1.37643 * 120.12637 * 244.85956 * 8 5 4 10 10 C 1.38620 * 120.24464 * 180.02562 * 9 8 5 11 11 C 1.38650 * 120.50348 * 359.97438 * 10 9 8 12 12 C 1.37601 * 120.24711 * 0.02562 * 11 10 9 13 13 C 1.40696 * 120.12640 * 64.58820 * 8 5 4 14 14 C 1.41390 * 120.24470 * 359.97438 * 13 8 5 15 15 H 1.08001 * 119.99810 * 331.34292 * 14 13 8 16 16 C 1.39949 * 120.00021 * 151.34779 * 14 13 8 17 17 N 1.30819 * 120.00368 * 348.15281 * 16 14 13 18 18 Si 1.86801 * 119.99688 * 168.15790 * 16 14 13 19 19 H 1.48502 * 109.47249 * 59.99967 * 18 16 14 20 20 H 1.48502 * 109.46878 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47419 * 299.99567 * 18 16 14 22 22 C 1.50696 * 109.46998 * 239.99893 * 2 1 3 23 23 C 1.39872 * 125.90038 * 84.99977 * 22 2 1 24 24 C 1.35312 * 107.92353 * 179.97438 * 23 22 2 25 25 N 1.34945 * 107.74579 * 0.02562 * 24 23 22 26 26 C 1.46501 * 126.03577 * 179.97438 * 25 24 23 27 27 N 1.30838 * 125.89978 * 264.68950 * 22 2 1 28 28 H 1.09001 * 109.47228 * 299.99697 * 1 2 3 29 29 H 1.09008 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47228 * 60.00109 * 1 2 3 31 31 H 0.97008 * 119.99667 * 86.34377 * 4 2 1 32 32 H 1.07996 * 119.87489 * 359.97438 * 9 8 5 33 33 H 1.08000 * 119.74619 * 179.97438 * 10 9 8 34 34 H 1.07994 * 119.87871 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.12507 * 179.97438 * 12 11 10 36 36 H 0.96997 * 120.00659 * 179.97438 * 17 16 14 37 37 H 1.08009 * 126.03429 * 359.97438 * 23 22 2 38 38 H 1.08007 * 126.12642 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.46704 * 90.00876 * 26 25 24 40 40 H 1.09002 * 109.46929 * 209.99960 * 26 25 24 41 41 H 1.08996 * 109.47380 * 330.00724 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 16 2.3805 0.1738 2.5614 6 8 2.7758 -0.7742 3.5435 7 8 3.2067 1.2527 2.1459 8 6 0.8781 0.8911 3.1384 9 6 0.7244 2.2589 3.1473 10 6 -0.4563 2.8259 3.6012 11 6 -1.4947 2.0244 4.0504 12 6 -1.3631 0.6548 4.0505 13 6 -0.1711 0.0678 3.5865 14 6 -0.0268 -1.3387 3.5761 15 1 0.6188 -1.8099 2.8499 16 6 -0.7208 -2.1202 4.5068 17 7 -1.3145 -1.5522 5.5248 18 14 -0.7993 -3.9746 4.2956 19 1 0.5765 -4.5334 4.3127 20 1 -1.5872 -4.5664 5.4065 21 1 -1.4490 -4.2982 3.0001 22 6 2.0323 -0.7104 -1.2304 23 6 2.2126 -0.1361 -2.4930 24 6 2.6764 -1.0969 -3.3252 25 7 2.7853 -2.2390 -2.6147 26 6 3.2501 -3.5309 -3.1256 27 7 2.3805 -1.9696 -1.3009 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 2.1295 -1.6542 1.1884 32 1 1.5269 2.8927 2.8001 33 1 -0.5681 3.9001 3.6050 34 1 -2.4104 2.4769 4.4014 35 1 -2.1731 0.0324 4.4011 36 1 -1.7958 -2.0937 6.1697 37 1 2.0162 0.8927 -2.7569 38 1 2.9158 -0.9723 -4.3710 39 1 4.3306 -3.6032 -3.0013 40 1 2.7661 -4.3358 -2.5725 41 1 2.9996 -3.6148 -4.1831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601436378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:09 Heat of formation + Delta-G solvation = -0.314979 kcal Electronic energy + Delta-G solvation = -27295.338696 eV Core-core repulsion = 23495.791080 eV Total energy + Delta-G solvation = -3799.547616 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09065 -39.37192 -38.09643 -37.34443 -36.66972 -35.64360 -33.70832 -31.98981 -31.34580 -30.93673 -30.66733 -27.41715 -27.30456 -24.20012 -23.35522 -22.89502 -22.05754 -20.73578 -20.20085 -19.47738 -18.60535 -18.09898 -17.51589 -17.13114 -16.87145 -16.31811 -16.05277 -15.90874 -15.11431 -14.95225 -14.90322 -14.62360 -14.44952 -14.39996 -13.96144 -13.86665 -13.44702 -13.23899 -13.20720 -13.06822 -12.99528 -12.88294 -12.84372 -12.78108 -12.51844 -12.50415 -12.15307 -12.08688 -11.62899 -11.56358 -11.19448 -11.14817 -10.41844 -10.12177 -9.77180 -9.42719 -9.37622 -8.77758 -6.57702 -0.17515 0.57490 1.01088 1.02006 1.34242 1.44799 1.51548 1.71053 1.84760 2.15476 2.34405 2.65949 3.00569 3.50616 3.52096 3.84468 3.94400 4.12533 4.25242 4.35370 4.38514 4.47401 4.50315 4.56011 4.71823 4.77107 4.77894 4.90479 4.95400 5.00746 5.03983 5.19507 5.30667 5.36334 5.42248 5.56085 5.68237 5.75832 5.86834 6.06000 6.12463 6.15234 6.25976 6.52092 6.71239 6.82126 6.87583 8.17898 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011443 B = 0.005018 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.262745 B = 5578.303694 C = 6790.631647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.235 3.765 3 H 0.107 0.893 4 N -1.106 6.106 5 S 2.715 3.285 6 O -1.002 7.002 7 O -1.008 7.008 8 C -0.782 4.782 9 C -0.014 4.014 10 C -0.245 4.245 11 C -0.074 4.074 12 C -0.184 4.184 13 C 0.172 3.828 14 C -0.474 4.474 15 H 0.087 0.913 16 C 0.043 3.957 17 N -0.806 5.806 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.260 1.260 21 H -0.249 1.249 22 C 0.060 3.940 23 C -0.284 4.284 24 C 0.067 3.933 25 N -0.383 5.383 26 C 0.093 3.907 27 N -0.330 5.330 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.418 0.582 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.295 0.705 37 H 0.168 0.832 38 H 0.221 0.779 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.093 -1.827 -17.806 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.126 3.874 3 H 0.125 0.875 4 N -0.864 5.864 5 S 2.812 3.188 6 O -0.993 6.993 7 O -0.998 6.998 8 C -0.877 4.877 9 C -0.034 4.034 10 C -0.265 4.265 11 C -0.092 4.092 12 C -0.204 4.204 13 C 0.167 3.833 14 C -0.502 4.502 15 H 0.105 0.895 16 C -0.176 4.176 17 N -0.430 5.430 18 Si 0.788 3.212 19 H -0.191 1.191 20 H -0.183 1.183 21 H -0.173 1.173 22 C -0.107 4.107 23 C -0.313 4.313 24 C -0.080 4.080 25 N -0.165 5.165 26 C -0.046 4.046 27 N -0.154 5.154 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.253 0.747 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.186 0.814 38 H 0.237 0.763 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.004 -2.880 -16.658 17.170 hybrid contribution -0.824 -0.319 0.130 0.893 sum 2.180 -3.199 -16.528 16.975 Atomic orbital electron populations 1.22231 0.93266 1.02800 1.03443 1.19156 0.94479 0.94799 0.78993 0.87474 1.55376 1.84154 1.20065 1.26812 1.00445 0.74095 0.72215 0.71997 1.93486 1.83243 1.63128 1.59423 1.93418 1.67056 1.56397 1.82971 1.29986 1.20833 1.03435 1.33479 1.20561 0.97003 0.92387 0.93430 1.20873 0.95315 0.99243 1.11110 1.21236 0.98265 0.93751 0.95974 1.21541 0.98374 0.94497 1.05999 1.17177 0.89131 0.92257 0.84734 1.20064 1.23651 0.91888 1.14599 0.89517 1.26679 0.91860 1.06047 0.92969 1.69801 1.24021 1.40553 1.08605 0.85447 0.79690 0.76035 0.80042 1.19063 1.18330 1.17270 1.22330 0.99658 0.92257 0.96420 1.21689 1.14824 1.02827 0.91977 1.23202 0.99385 0.85072 1.00301 1.48897 1.50512 1.10844 1.06285 1.22177 1.00899 0.80216 1.01341 1.77192 1.22183 1.17095 0.98928 0.92013 0.92817 0.89170 0.74703 0.85889 0.85382 0.86027 0.86915 0.89437 0.81432 0.76259 0.89912 0.89973 0.85917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 9.50 71.98 0.68 -4.41 16 2 C 0.23 7.87 3.37 44.25 0.15 8.02 16 3 H 0.11 3.45 7.53 -2.39 -0.02 3.44 16 4 N -1.11 -43.54 4.56 -172.53 -0.79 -44.32 16 5 S 2.71 125.82 4.94 -56.49 -0.28 125.54 16 6 O -1.00 -53.71 16.61 -128.00 -2.13 -55.83 16 7 O -1.01 -47.37 16.33 -128.00 -2.09 -49.46 16 8 C -0.78 -37.61 4.74 22.73 0.11 -37.50 16 9 C -0.01 -0.62 9.54 22.22 0.21 -0.41 16 10 C -0.25 -10.08 10.05 22.46 0.23 -9.86 16 11 C -0.07 -3.17 10.02 22.22 0.22 -2.95 16 12 C -0.18 -9.12 8.66 22.73 0.20 -8.92 16 13 C 0.17 8.82 5.09 -21.29 -0.11 8.72 16 14 C -0.47 -24.62 7.65 23.46 0.18 -24.44 16 15 H 0.09 4.34 5.74 -2.91 -0.02 4.33 16 16 C 0.04 2.11 5.24 85.26 0.45 2.56 16 17 N -0.81 -40.78 10.88 21.83 0.24 -40.54 16 18 Si 0.97 38.31 29.58 68.60 2.03 40.34 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 22 C 0.06 1.85 6.19 43.10 0.27 2.12 16 23 C -0.28 -6.56 10.74 21.99 0.24 -6.32 16 24 C 0.07 1.19 11.49 83.54 0.96 2.15 16 25 N -0.38 -8.49 4.01 -369.56 -1.48 -9.97 16 26 C 0.09 1.16 11.47 127.77 1.47 2.63 16 27 N -0.33 -10.41 11.90 -47.39 -0.56 -10.97 16 28 H 0.06 2.27 6.40 -2.39 -0.02 2.25 16 29 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.42 16.31 8.04 -96.74 -0.78 15.53 16 32 H 0.12 4.95 7.32 -2.91 -0.02 4.93 16 33 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 34 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.11 5.75 6.23 -2.91 -0.02 5.73 16 36 H 0.29 13.42 8.30 -92.71 -0.77 12.66 16 37 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.22 1.55 8.06 -2.91 -0.02 1.52 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -73.07 356.38 0.48 -72.59 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: 0.29 Total: 41.25 kcal Atomic # 6 Polarization: -73.87 SS G_CDS: 5.24 Total: -68.62 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -2.60 Total: -105.81 kcal Atomic # 8 Polarization: -101.08 SS G_CDS: -4.22 Total: -105.29 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: 125.82 SS G_CDS: -0.28 Total: 125.54 kcal Total: -73.07 0.48 -72.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.279 kcal (2) G-P(sol) polarization free energy of solvation -73.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds