Wall clock time and date at job start Tue Mar 31 2020 19:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46671 * 2 1 4 4 N 1.46499 * 109.47122 * 240.00275 * 2 1 3 5 5 S 1.65599 * 120.00018 * 94.33602 * 4 2 1 6 6 O 1.42100 * 106.40350 * 310.29424 * 5 4 2 7 7 O 1.42102 * 106.40436 * 177.37664 * 5 4 2 8 8 C 1.76198 * 107.21818 * 63.83564 * 5 4 2 9 9 C 1.37645 * 120.13008 * 244.01062 * 8 5 4 10 10 C 1.38608 * 120.25111 * 180.32301 * 9 8 5 11 11 C 1.38660 * 120.49950 * 359.66733 * 10 9 8 12 12 C 1.37602 * 120.24823 * 0.02562 * 11 10 9 13 13 C 1.40703 * 120.12923 * 63.70603 * 8 5 4 14 14 C 1.41393 * 120.24057 * 359.97438 * 13 8 5 15 15 H 1.08007 * 119.99986 * 335.25369 * 14 13 8 16 16 C 1.39946 * 119.99982 * 155.26481 * 14 13 8 17 17 N 1.30826 * 119.99529 * 332.21685 * 16 14 13 18 18 Si 1.86796 * 120.00188 * 152.22603 * 16 14 13 19 19 H 1.48500 * 109.47270 * 179.97438 * 18 16 14 20 20 H 1.48511 * 109.46895 * 299.99427 * 18 16 14 21 21 H 1.48498 * 109.47560 * 59.99502 * 18 16 14 22 22 C 1.50699 * 109.47427 * 119.99843 * 2 1 3 23 23 C 1.39864 * 125.90038 * 274.71669 * 22 2 1 24 24 C 1.35318 * 107.91746 * 179.86127 * 23 22 2 25 25 N 1.34939 * 107.74795 * 0.39644 * 24 23 22 26 26 C 1.46500 * 126.03778 * 179.74784 * 25 24 23 27 27 N 1.30844 * 125.89684 * 95.02586 * 22 2 1 28 28 H 1.08997 * 109.47296 * 59.99775 * 1 2 3 29 29 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46926 * 299.99547 * 1 2 3 31 31 H 0.96993 * 120.00122 * 274.33742 * 4 2 1 32 32 H 1.08004 * 119.87275 * 0.02562 * 9 8 5 33 33 H 1.08001 * 119.75001 * 179.69341 * 10 9 8 34 34 H 1.07997 * 119.87454 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.12610 * 180.02562 * 12 11 10 36 36 H 0.97001 * 120.00320 * 356.25911 * 17 16 14 37 37 H 1.08001 * 126.04339 * 359.97438 * 23 22 2 38 38 H 1.08003 * 126.12499 * 180.15015 * 24 23 22 39 39 H 1.09006 * 109.47379 * 270.02402 * 26 25 24 40 40 H 1.08998 * 109.47377 * 30.02842 * 26 25 24 41 41 H 1.09001 * 109.47562 * 150.02690 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.3966 0.1757 -2.5559 6 8 1.2877 1.0270 -2.8107 7 8 2.8914 -0.7605 -3.5035 8 6 3.7480 1.2287 -2.1444 9 6 3.5921 2.5960 -2.1726 10 6 4.6554 3.4268 -1.8558 11 6 5.8845 2.8923 -1.5006 12 6 6.0615 1.5283 -1.4596 13 6 4.9890 0.6751 -1.7793 14 6 5.1589 -0.7280 -1.7401 15 1 4.3043 -1.3715 -1.5911 16 6 6.4344 -1.2830 -1.8939 17 7 7.3456 -0.6467 -2.5841 18 14 6.8357 -2.9322 -1.1141 19 1 8.2416 -3.2970 -1.4231 20 1 6.6599 -2.8397 0.3577 21 1 5.9244 -3.9714 -1.6570 22 6 2.0324 -0.7104 1.2304 23 6 2.2180 -0.1346 2.4915 24 6 2.6766 -1.0969 3.3251 25 7 2.7859 -2.2388 2.6145 26 6 3.2514 -3.5306 3.1252 27 7 2.3757 -1.9709 1.3021 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.1201 -1.6551 -1.1918 32 1 2.6389 3.0232 -2.4473 33 1 4.5254 4.4985 -1.8854 34 1 6.7061 3.5490 -1.2553 35 1 7.0196 1.1141 -1.1823 36 1 7.1217 0.1828 -3.0344 37 1 2.0272 0.8955 2.7541 38 1 2.9162 -0.9722 4.3708 39 1 4.3320 -3.6022 3.0013 40 1 3.0005 -3.6150 4.1825 41 1 2.7681 -4.3357 2.5717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:13 Heat of formation + Delta-G solvation = 15.115365 kcal Electronic energy + Delta-G solvation = -27709.959089 eV Core-core repulsion = 23911.080582 eV Total energy + Delta-G solvation = -3798.878506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02901 -37.77931 -36.41320 -35.92240 -34.81857 -34.08759 -32.66686 -30.18559 -29.88092 -29.56621 -29.30238 -26.50501 -25.34507 -23.01445 -21.78092 -21.16993 -21.05194 -19.54580 -18.63336 -18.23419 -17.18239 -16.56855 -16.06970 -15.65600 -15.34684 -14.83930 -14.49333 -14.15883 -13.95612 -13.68858 -13.57270 -13.34292 -13.22436 -12.94436 -12.55730 -12.47108 -12.45437 -12.20019 -11.89851 -11.60871 -11.32009 -11.18705 -11.14045 -11.06753 -10.96382 -10.78351 -10.53095 -10.48934 -10.43850 -9.83422 -9.56007 -9.21334 -9.10182 -8.79670 -8.39712 -8.17474 -7.80723 -7.50195 -4.79710 1.55013 2.04483 2.28754 2.61905 2.69345 2.96294 3.04644 3.17832 3.25628 3.85723 3.92557 4.33717 4.51119 4.74167 4.85598 4.96285 5.12836 5.16689 5.31434 5.37586 5.47740 5.63829 5.71711 5.76131 5.90018 5.96814 6.01299 6.09243 6.11474 6.34199 6.43710 6.52208 6.70202 6.78212 6.95017 7.13060 7.14887 7.33109 7.42731 7.53252 7.64611 7.69721 7.84492 7.93499 8.02531 8.39348 8.60447 9.75680 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.006915 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.684494 B = 4047.953845 C = 5472.037853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.243 3.757 3 H 0.100 0.900 4 N -1.112 6.112 5 S 2.701 3.299 6 O -0.996 6.996 7 O -0.967 6.967 8 C -0.786 4.786 9 C 0.015 3.985 10 C -0.269 4.269 11 C -0.054 4.054 12 C -0.214 4.214 13 C 0.164 3.836 14 C -0.488 4.488 15 H 0.090 0.910 16 C 0.044 3.956 17 N -0.767 5.767 18 Si 1.062 2.938 19 H -0.271 1.271 20 H -0.273 1.273 21 H -0.268 1.268 22 C 0.080 3.920 23 C -0.262 4.262 24 C 0.050 3.950 25 N -0.378 5.378 26 C 0.103 3.897 27 N -0.278 5.278 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.417 0.583 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.304 0.696 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 -2.946 12.647 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.132 3.868 3 H 0.118 0.882 4 N -0.868 5.868 5 S 2.798 3.202 6 O -0.987 6.987 7 O -0.957 6.957 8 C -0.881 4.881 9 C -0.005 4.005 10 C -0.289 4.289 11 C -0.073 4.073 12 C -0.234 4.234 13 C 0.159 3.841 14 C -0.514 4.514 15 H 0.107 0.893 16 C -0.182 4.182 17 N -0.387 5.387 18 Si 0.885 3.115 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.192 1.192 22 C -0.088 4.088 23 C -0.292 4.292 24 C -0.096 4.096 25 N -0.160 5.160 26 C -0.039 4.039 27 N -0.101 5.101 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.251 0.749 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.118 0.882 37 H 0.165 0.835 38 H 0.188 0.812 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.550 -5.182 11.424 13.717 hybrid contribution -0.395 1.925 0.918 2.169 sum -5.945 -3.257 12.342 14.081 Atomic orbital electron populations 1.22304 0.94090 1.02777 1.03172 1.18911 0.93622 0.94683 0.79542 0.88173 1.55695 1.82541 1.19625 1.28931 1.01096 0.73546 0.73205 0.72356 1.93447 1.52588 1.68475 1.84143 1.93541 1.81282 1.62591 1.58302 1.29756 1.16505 1.06896 1.34918 1.20319 0.97202 0.91880 0.91114 1.20406 0.94718 0.97434 1.16343 1.20798 0.95818 0.94909 0.95779 1.21285 0.99697 0.93028 1.09396 1.16936 0.89637 0.92639 0.84902 1.20932 0.97694 0.92035 1.40731 0.89255 1.27126 0.91879 1.05551 0.93606 1.70465 1.37150 1.15545 1.15576 0.83678 0.77544 0.73387 0.76930 1.19502 1.19866 1.19237 1.22327 0.98827 0.91917 0.95765 1.21304 1.14063 1.00962 0.92899 1.22422 1.01914 0.86569 0.98677 1.48452 1.51244 1.09046 1.07297 1.21815 1.00685 0.82150 0.99255 1.77246 1.19959 1.16715 0.96146 0.90269 0.92172 0.91564 0.74879 0.87258 0.88614 0.88776 0.87350 0.88160 0.83507 0.81214 0.90755 0.89798 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.50 37.16 0.35 -1.95 16 2 C 0.24 4.05 3.26 -69.08 -0.22 3.82 16 3 H 0.10 1.68 7.79 -51.92 -0.40 1.27 16 4 N -1.11 -21.24 4.52 -5.88 -0.03 -21.26 16 5 S 2.70 60.73 4.86 -107.50 -0.52 60.21 16 6 O -1.00 -22.51 16.19 -57.17 -0.93 -23.43 16 7 O -0.97 -24.91 16.61 -57.17 -0.95 -25.86 16 8 C -0.79 -18.97 5.70 -38.87 -0.22 -19.19 16 9 C 0.01 0.33 9.53 -39.66 -0.38 -0.04 16 10 C -0.27 -5.83 10.05 -39.29 -0.39 -6.23 16 11 C -0.05 -1.21 10.02 -39.66 -0.40 -1.60 16 12 C -0.21 -5.28 7.98 -38.87 -0.31 -5.60 16 13 C 0.16 4.21 5.31 -106.83 -0.57 3.64 16 14 C -0.49 -12.58 7.69 -37.74 -0.29 -12.87 16 15 H 0.09 2.25 5.63 -52.48 -0.30 1.95 16 16 C 0.04 1.11 4.88 -17.34 -0.08 1.02 16 17 N -0.77 -19.81 12.37 55.55 0.69 -19.12 16 18 Si 1.06 21.43 30.01 -169.99 -5.10 16.33 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 C 0.08 1.31 6.19 -82.41 -0.51 0.80 16 23 C -0.26 -3.66 10.74 -40.01 -0.43 -4.09 16 24 C 0.05 0.60 11.49 -17.23 -0.20 0.41 16 25 N -0.38 -5.15 4.01 -68.16 -0.27 -5.42 16 26 C 0.10 0.93 11.47 59.85 0.69 1.62 16 27 N -0.28 -4.72 11.92 33.67 0.40 -4.32 16 28 H 0.08 1.17 7.57 -51.93 -0.39 0.78 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.42 7.75 8.05 -34.47 -0.28 7.47 16 32 H 0.11 2.26 7.33 -52.48 -0.38 1.88 16 33 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 34 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.11 2.70 6.51 -52.49 -0.34 2.36 16 36 H 0.30 8.10 6.73 -40.82 -0.27 7.82 16 37 H 0.15 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.17 1.34 8.06 -52.48 -0.42 0.91 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -33.19 358.18 -9.25 -42.44 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -4.97 Total: 15.32 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: -2.97 Total: -40.26 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.79 Total: -50.13 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -1.88 Total: -49.30 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.10 Total: 16.33 kcal Atomic # 16 Polarization: 60.73 SS G_CDS: -0.52 Total: 60.21 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.19 -9.25 -42.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.553 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds