Wall clock time and date at job start Tue Mar 31 2020 19:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46671 * 2 1 4 4 N 1.46499 * 109.47122 * 240.00275 * 2 1 3 5 5 S 1.65599 * 120.00018 * 94.33602 * 4 2 1 6 6 O 1.42100 * 106.40350 * 310.29424 * 5 4 2 7 7 O 1.42102 * 106.40436 * 177.37664 * 5 4 2 8 8 C 1.76198 * 107.21818 * 63.83564 * 5 4 2 9 9 C 1.37645 * 120.13008 * 244.01062 * 8 5 4 10 10 C 1.38608 * 120.25111 * 180.32301 * 9 8 5 11 11 C 1.38660 * 120.49950 * 359.66733 * 10 9 8 12 12 C 1.37602 * 120.24823 * 0.02562 * 11 10 9 13 13 C 1.40703 * 120.12923 * 63.70603 * 8 5 4 14 14 C 1.41393 * 120.24057 * 359.97438 * 13 8 5 15 15 H 1.08007 * 119.99986 * 335.25369 * 14 13 8 16 16 C 1.39946 * 119.99982 * 155.26481 * 14 13 8 17 17 N 1.30826 * 119.99529 * 332.21685 * 16 14 13 18 18 Si 1.86796 * 120.00188 * 152.22603 * 16 14 13 19 19 H 1.48500 * 109.47270 * 179.97438 * 18 16 14 20 20 H 1.48511 * 109.46895 * 299.99427 * 18 16 14 21 21 H 1.48498 * 109.47560 * 59.99502 * 18 16 14 22 22 C 1.50699 * 109.47427 * 119.99843 * 2 1 3 23 23 C 1.39864 * 125.90038 * 274.71669 * 22 2 1 24 24 C 1.35318 * 107.91746 * 179.86127 * 23 22 2 25 25 N 1.34939 * 107.74795 * 0.39644 * 24 23 22 26 26 C 1.46500 * 126.03778 * 179.74784 * 25 24 23 27 27 N 1.30844 * 125.89684 * 95.02586 * 22 2 1 28 28 H 1.08997 * 109.47296 * 59.99775 * 1 2 3 29 29 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46926 * 299.99547 * 1 2 3 31 31 H 0.96993 * 120.00122 * 274.33742 * 4 2 1 32 32 H 1.08004 * 119.87275 * 0.02562 * 9 8 5 33 33 H 1.08001 * 119.75001 * 179.69341 * 10 9 8 34 34 H 1.07997 * 119.87454 * 180.02562 * 11 10 9 35 35 H 1.08000 * 120.12610 * 180.02562 * 12 11 10 36 36 H 0.97001 * 120.00320 * 356.25911 * 17 16 14 37 37 H 1.08001 * 126.04339 * 359.97438 * 23 22 2 38 38 H 1.08003 * 126.12499 * 180.15015 * 24 23 22 39 39 H 1.09006 * 109.47379 * 270.02402 * 26 25 24 40 40 H 1.08998 * 109.47377 * 30.02842 * 26 25 24 41 41 H 1.09001 * 109.47562 * 150.02690 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.3966 0.1757 -2.5559 6 8 1.2877 1.0270 -2.8107 7 8 2.8914 -0.7605 -3.5035 8 6 3.7480 1.2287 -2.1444 9 6 3.5921 2.5960 -2.1726 10 6 4.6554 3.4268 -1.8558 11 6 5.8845 2.8923 -1.5006 12 6 6.0615 1.5283 -1.4596 13 6 4.9890 0.6751 -1.7793 14 6 5.1589 -0.7280 -1.7401 15 1 4.3043 -1.3715 -1.5911 16 6 6.4344 -1.2830 -1.8939 17 7 7.3456 -0.6467 -2.5841 18 14 6.8357 -2.9322 -1.1141 19 1 8.2416 -3.2970 -1.4231 20 1 6.6599 -2.8397 0.3577 21 1 5.9244 -3.9714 -1.6570 22 6 2.0324 -0.7104 1.2304 23 6 2.2180 -0.1346 2.4915 24 6 2.6766 -1.0969 3.3251 25 7 2.7859 -2.2388 2.6145 26 6 3.2514 -3.5306 3.1252 27 7 2.3757 -1.9709 1.3021 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.1201 -1.6551 -1.1918 32 1 2.6389 3.0232 -2.4473 33 1 4.5254 4.4985 -1.8854 34 1 6.7061 3.5490 -1.2553 35 1 7.0196 1.1141 -1.1823 36 1 7.1217 0.1828 -3.0344 37 1 2.0272 0.8955 2.7541 38 1 2.9162 -0.9722 4.3708 39 1 4.3320 -3.6022 3.0013 40 1 3.0005 -3.6150 4.1825 41 1 2.7681 -4.3357 2.5717 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601436379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:12 Heat of formation + Delta-G solvation = -7.560083 kcal Electronic energy + Delta-G solvation = -27710.942370 eV Core-core repulsion = 23911.080582 eV Total energy + Delta-G solvation = -3799.861787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05962 -39.61307 -38.15801 -37.36312 -36.71711 -35.93066 -33.69051 -32.01098 -31.30528 -30.91743 -30.70417 -27.41331 -27.21415 -24.18959 -23.58992 -23.00595 -22.05451 -20.73889 -20.37664 -20.02175 -18.62294 -18.01062 -17.72815 -17.09408 -16.64725 -16.30570 -16.13837 -15.81177 -15.50927 -15.13324 -14.96590 -14.62127 -14.42371 -14.40289 -14.07053 -13.88766 -13.61780 -13.40859 -13.22840 -13.09098 -13.06063 -12.93928 -12.86979 -12.80612 -12.58870 -12.27878 -12.11658 -12.05960 -11.64649 -11.56262 -11.27776 -11.02032 -10.46914 -10.10670 -10.01018 -9.67198 -9.42064 -9.40408 -6.72014 -0.21952 0.43667 0.86839 1.04487 1.39047 1.54650 1.69305 1.73252 1.86411 2.19646 2.28477 2.51515 2.92558 3.31729 3.54026 3.77763 3.90762 4.09869 4.23637 4.24314 4.31717 4.34326 4.46367 4.47778 4.64866 4.72109 4.76832 4.82813 4.88965 4.94305 5.02210 5.09719 5.26395 5.31046 5.32815 5.49132 5.60460 5.64795 5.70311 5.84819 5.96736 6.10554 6.17029 6.27121 6.52848 6.73444 6.84687 7.80855 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008857 B = 0.006915 C = 0.005116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.684494 B = 4047.953845 C = 5472.037853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.235 3.765 3 H 0.095 0.905 4 N -1.104 6.104 5 S 2.719 3.281 6 O -0.999 6.999 7 O -1.005 7.005 8 C -0.799 4.799 9 C 0.002 3.998 10 C -0.261 4.261 11 C -0.050 4.050 12 C -0.240 4.240 13 C 0.146 3.854 14 C -0.519 4.519 15 H 0.086 0.914 16 C 0.010 3.990 17 N -0.787 5.787 18 Si 1.103 2.897 19 H -0.262 1.262 20 H -0.258 1.258 21 H -0.260 1.260 22 C 0.061 3.939 23 C -0.286 4.286 24 C 0.064 3.936 25 N -0.382 5.382 26 C 0.092 3.908 27 N -0.322 5.322 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.418 0.582 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.289 0.711 37 H 0.163 0.837 38 H 0.217 0.783 39 H 0.074 0.926 40 H 0.125 0.875 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 -2.470 15.187 16.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.126 3.874 3 H 0.113 0.887 4 N -0.862 5.862 5 S 2.815 3.185 6 O -0.989 6.989 7 O -0.996 6.996 8 C -0.894 4.894 9 C -0.018 4.018 10 C -0.281 4.281 11 C -0.069 4.069 12 C -0.260 4.260 13 C 0.141 3.859 14 C -0.546 4.546 15 H 0.104 0.896 16 C -0.210 4.210 17 N -0.408 5.408 18 Si 0.919 3.081 19 H -0.186 1.186 20 H -0.182 1.182 21 H -0.185 1.185 22 C -0.107 4.107 23 C -0.315 4.315 24 C -0.082 4.082 25 N -0.164 5.164 26 C -0.048 4.048 27 N -0.146 5.146 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.253 0.747 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.181 0.819 38 H 0.233 0.767 39 H 0.093 0.907 40 H 0.143 0.857 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.010 -4.686 13.959 15.904 hybrid contribution -0.339 1.906 0.197 1.946 sum -6.350 -2.780 14.156 15.762 Atomic orbital electron populations 1.22249 0.92151 1.03218 1.03988 1.19148 0.95162 0.94200 0.78912 0.88750 1.55384 1.82301 1.19445 1.29083 1.00422 0.72999 0.72661 0.72400 1.93430 1.52260 1.68651 1.84569 1.93482 1.81923 1.63642 1.60548 1.30040 1.16762 1.08134 1.34432 1.20678 0.98558 0.91494 0.91059 1.20868 0.93848 0.99281 1.14121 1.21187 0.97151 0.94356 0.94192 1.21327 0.99265 0.94267 1.11104 1.17228 0.90560 0.93106 0.85026 1.21062 0.98180 0.92435 1.42890 0.89612 1.28392 0.91637 1.07998 0.92978 1.70569 1.37484 1.15555 1.17166 0.83220 0.77848 0.69979 0.77069 1.18617 1.18234 1.18461 1.22333 0.99723 0.92291 0.96315 1.21632 1.15198 1.02384 0.92330 1.23129 0.99535 0.85338 1.00240 1.48833 1.50423 1.10778 1.06385 1.22181 1.00652 0.80433 1.01501 1.77143 1.21579 1.17249 0.98625 0.91226 0.91923 0.88848 0.74658 0.85399 0.84959 0.85566 0.88473 0.89859 0.81926 0.76677 0.90709 0.85715 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 9.50 71.98 0.68 -3.59 16 2 C 0.23 7.81 3.26 44.25 0.14 7.96 16 3 H 0.09 3.18 7.79 -2.38 -0.02 3.16 16 4 N -1.10 -43.02 4.52 -172.52 -0.78 -43.80 16 5 S 2.72 124.62 4.86 -56.49 -0.27 124.35 16 6 O -1.00 -45.17 16.19 -128.00 -2.07 -47.24 16 7 O -1.01 -53.64 16.61 -128.00 -2.13 -55.76 16 8 C -0.80 -38.99 5.70 22.73 0.13 -38.86 16 9 C 0.00 0.08 9.53 22.22 0.21 0.29 16 10 C -0.26 -10.73 10.05 22.46 0.23 -10.51 16 11 C -0.05 -2.17 10.02 22.22 0.22 -1.94 16 12 C -0.24 -11.97 7.98 22.73 0.18 -11.79 16 13 C 0.15 7.65 5.31 -21.29 -0.11 7.53 16 14 C -0.52 -27.65 7.69 23.46 0.18 -27.47 16 15 H 0.09 4.49 5.63 -2.91 -0.02 4.47 16 16 C 0.01 0.53 4.88 85.26 0.42 0.94 16 17 N -0.79 -42.00 12.37 21.83 0.27 -41.73 16 18 Si 1.10 43.58 30.01 68.60 2.06 45.64 16 19 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 20 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 C 0.06 1.96 6.19 43.10 0.27 2.22 16 23 C -0.29 -7.47 10.74 21.99 0.24 -7.24 16 24 C 0.06 1.36 11.49 83.54 0.96 2.32 16 25 N -0.38 -9.63 4.01 -369.56 -1.48 -11.11 16 26 C 0.09 1.44 11.47 127.77 1.47 2.91 16 27 N -0.32 -10.79 11.92 -47.39 -0.56 -11.36 16 28 H 0.07 2.02 7.57 -2.39 -0.02 2.00 16 29 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.42 16.13 8.05 -96.75 -0.78 15.36 16 32 H 0.13 5.09 7.33 -2.91 -0.02 5.07 16 33 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 35 H 0.10 4.98 6.51 -2.91 -0.02 4.96 16 36 H 0.29 16.06 6.73 -92.71 -0.62 15.43 16 37 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -73.74 358.18 0.67 -73.06 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: 0.43 Total: 45.16 kcal Atomic # 6 Polarization: -82.43 SS G_CDS: 5.21 Total: -77.22 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -2.56 Total: -107.99 kcal Atomic # 8 Polarization: -98.81 SS G_CDS: -4.20 Total: -103.00 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.06 Total: 45.64 kcal Atomic # 16 Polarization: 124.62 SS G_CDS: -0.27 Total: 124.35 kcal Total: -73.74 0.67 -73.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.502 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds