Wall clock time and date at job start Tue Mar 31 2020 19:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46717 * 2 1 4 4 N 1.46503 * 109.47022 * 119.99854 * 2 1 3 5 5 S 1.65601 * 120.00088 * 263.59761 * 4 2 1 6 6 O 1.42097 * 106.39902 * 179.35288 * 5 4 2 7 7 O 1.42099 * 106.40351 * 312.27915 * 5 4 2 8 8 C 1.76202 * 107.21550 * 65.81807 * 5 4 2 9 9 C 1.37637 * 120.12633 * 245.61416 * 8 5 4 10 10 C 1.38620 * 120.24685 * 180.02562 * 9 8 5 11 11 C 1.38654 * 120.50216 * 359.97153 * 10 9 8 12 12 C 1.37596 * 120.24674 * 0.02636 * 11 10 9 13 13 C 1.40697 * 120.13048 * 65.33542 * 8 5 4 14 14 C 1.41403 * 120.24016 * 359.97438 * 13 8 5 15 15 H 1.08003 * 120.00046 * 329.91815 * 14 13 8 16 16 C 1.39945 * 119.99847 * 149.92124 * 14 13 8 17 17 N 1.30826 * 120.00045 * 343.76836 * 16 14 13 18 18 Si 1.86799 * 119.99989 * 163.77145 * 16 14 13 19 19 H 1.48496 * 109.47155 * 5.00744 * 18 16 14 20 20 H 1.48503 * 109.46906 * 125.00671 * 18 16 14 21 21 H 1.48501 * 109.47016 * 245.00570 * 18 16 14 22 22 C 1.50693 * 109.46943 * 240.00416 * 2 1 3 23 23 N 1.30504 * 125.65007 * 283.39112 * 22 2 1 24 24 C 1.34123 * 109.25813 * 179.97438 * 23 22 2 25 25 C 1.34663 * 108.01999 * 359.73055 * 24 23 22 26 26 N 1.35040 * 125.65438 * 103.35364 * 22 2 1 27 27 C 1.46497 * 126.39486 * 0.03311 * 26 22 2 28 28 H 1.08990 * 109.47078 * 59.99839 * 1 2 3 29 29 H 1.09003 * 109.46717 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46890 * 299.99693 * 1 2 3 31 31 H 0.96996 * 119.99663 * 83.60815 * 4 2 1 32 32 H 1.07998 * 119.87645 * 359.97438 * 9 8 5 33 33 H 1.08000 * 119.74353 * 179.97438 * 10 9 8 34 34 H 1.07995 * 119.87494 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.12486 * 179.97438 * 12 11 10 36 36 H 0.96994 * 120.00146 * 180.02562 * 17 16 14 37 37 H 1.08009 * 125.98955 * 179.97438 * 24 23 22 38 38 H 1.08008 * 126.59061 * 180.27975 * 25 24 23 39 39 H 1.09001 * 109.47401 * 84.79896 * 27 26 22 40 40 H 1.08999 * 109.47212 * 324.79208 * 27 26 22 41 41 H 1.09004 * 109.47059 * 204.79268 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4452 0.1800 2.5387 6 8 2.8559 -0.7658 3.5164 7 8 3.2770 1.2381 2.0831 8 6 0.9782 0.9327 3.1602 9 6 0.8451 2.3026 3.1455 10 6 -0.3076 2.8974 3.6343 11 6 -1.3387 2.1219 4.1423 12 6 -1.2273 0.7507 4.1668 13 6 -0.0640 0.1355 3.6680 14 6 0.0589 -1.2731 3.6822 15 1 0.6489 -1.7713 2.9271 16 6 -0.5839 -2.0215 4.6747 17 7 -1.0256 -1.4318 5.7557 18 14 -0.8111 -3.8627 4.4560 19 1 -0.1220 -4.3027 3.2164 20 1 -0.2323 -4.5750 5.6235 21 1 -2.2595 -4.1741 4.3544 22 6 2.0323 -0.7103 -1.2305 23 7 2.0543 -2.0032 -1.4067 24 6 2.5653 -2.2762 -2.6164 25 6 2.8661 -1.1079 -3.2148 26 7 2.5336 -0.1145 -2.3338 27 6 2.6872 1.3263 -2.5498 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0918 -1.6578 1.2018 32 1 1.6421 2.9163 2.7525 33 1 -0.4033 3.9730 3.6192 34 1 -2.2321 2.5960 4.5209 35 1 -2.0315 0.1485 4.5634 36 1 -1.4708 -1.9506 6.4438 37 1 2.7067 -3.2603 -3.0383 38 1 3.2905 -0.9796 -4.1997 39 1 3.6285 1.6609 -2.1136 40 1 1.8595 1.8549 -2.0771 41 1 2.6881 1.5352 -3.6197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601469681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:42 Heat of formation + Delta-G solvation = 5.469378 kcal Electronic energy + Delta-G solvation = -27591.255798 eV Core-core repulsion = 23791.959010 eV Total energy + Delta-G solvation = -3799.296788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06065 -37.62375 -36.34856 -35.77708 -34.83374 -34.01507 -33.86195 -30.27026 -30.02958 -29.57065 -28.41351 -27.01787 -25.51209 -23.32756 -21.66662 -21.32972 -21.15704 -19.70044 -18.65890 -17.69363 -17.42063 -16.68573 -16.01517 -15.82011 -15.39612 -15.28561 -14.50290 -14.40291 -14.22646 -13.54956 -13.34008 -13.32261 -13.20711 -13.10883 -12.78230 -12.73742 -12.69882 -12.12230 -11.77188 -11.51057 -11.27436 -11.20910 -11.15760 -11.09202 -11.03427 -10.92791 -10.63436 -10.47018 -9.88492 -9.86991 -9.58185 -9.54365 -9.39095 -8.86688 -8.34733 -8.03452 -7.61380 -7.04487 -4.73116 1.47379 2.06547 2.33292 2.72643 2.76535 3.02752 3.10601 3.12686 3.21639 3.82941 3.93853 4.39509 4.41779 4.61092 4.73614 4.79748 4.99654 5.11099 5.26054 5.29610 5.44401 5.47036 5.57029 5.70058 5.78085 6.02940 6.15199 6.21840 6.26994 6.36096 6.42106 6.64247 6.78883 6.83032 6.92731 7.07582 7.15762 7.30734 7.48086 7.56908 7.68461 7.79388 7.90383 8.19030 8.29348 8.52244 8.63989 9.90784 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005213 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.714704 B = 5369.565317 C = 6487.354951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.246 3.754 3 H 0.096 0.904 4 N -1.108 6.108 5 S 2.698 3.302 6 O -0.959 6.959 7 O -1.001 7.001 8 C -0.775 4.775 9 C -0.002 4.002 10 C -0.251 4.251 11 C -0.076 4.076 12 C -0.157 4.157 13 C 0.191 3.809 14 C -0.445 4.445 15 H 0.091 0.909 16 C 0.083 3.917 17 N -0.771 5.771 18 Si 0.911 3.089 19 H -0.251 1.251 20 H -0.270 1.270 21 H -0.269 1.269 22 C 0.212 3.788 23 N -0.478 5.478 24 C -0.028 4.028 25 C -0.064 4.064 26 N -0.457 5.457 27 C 0.065 3.935 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.421 0.579 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.288 0.712 37 H 0.168 0.832 38 H 0.173 0.827 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 2.420 -14.131 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.136 3.864 3 H 0.114 0.886 4 N -0.865 5.865 5 S 2.796 3.204 6 O -0.949 6.949 7 O -0.991 6.991 8 C -0.871 4.871 9 C -0.022 4.022 10 C -0.271 4.271 11 C -0.095 4.095 12 C -0.176 4.176 13 C 0.186 3.814 14 C -0.473 4.473 15 H 0.109 0.891 16 C -0.139 4.139 17 N -0.394 5.394 18 Si 0.734 3.266 19 H -0.174 1.174 20 H -0.195 1.195 21 H -0.194 1.194 22 C -0.053 4.053 23 N -0.196 5.196 24 C -0.177 4.177 25 C -0.197 4.197 26 N -0.139 5.139 27 C -0.077 4.077 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.256 0.744 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.186 0.814 38 H 0.190 0.810 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.095 2.187 -13.037 13.384 hybrid contribution -0.563 -0.370 -0.625 0.919 sum 1.532 1.816 -13.662 13.867 Atomic orbital electron populations 1.22318 0.93017 1.04222 1.02922 1.18752 0.94588 0.93897 0.79163 0.88574 1.55732 1.83809 1.20007 1.26903 1.01164 0.74429 0.72768 0.72048 1.93556 1.81911 1.62074 1.57353 1.93431 1.66434 1.57316 1.81963 1.29817 1.21211 1.02966 1.33095 1.20235 0.95789 0.92568 0.93642 1.20450 0.96894 0.97490 1.12308 1.20865 0.96962 0.94537 0.97088 1.21370 0.98637 0.93259 1.04378 1.16940 0.88161 0.91968 0.84319 1.19913 1.25541 0.91303 1.10504 0.89146 1.25931 0.92166 1.02148 0.93622 1.69805 1.25552 1.39321 1.04681 0.86186 0.79100 0.80931 0.80423 1.17407 1.19494 1.19380 1.23429 1.01946 0.89175 0.90701 1.70171 1.19682 1.11975 1.17792 1.22303 1.04907 0.98023 0.92473 1.22658 1.10642 0.88298 0.98096 1.45298 1.46867 1.07609 1.14173 1.22137 1.04277 0.77634 1.03689 0.92524 0.90755 0.89594 0.74353 0.87539 0.88818 0.88902 0.86478 0.90149 0.81430 0.81017 0.89978 0.89202 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.50 37.16 0.35 -2.18 16 2 C 0.25 3.95 3.19 -69.08 -0.22 3.73 16 3 H 0.10 1.43 6.59 -51.93 -0.34 1.09 16 4 N -1.11 -20.69 4.61 -5.88 -0.03 -20.72 16 5 S 2.70 59.27 4.95 -107.50 -0.53 58.74 16 6 O -0.96 -24.32 16.57 -57.17 -0.95 -25.27 16 7 O -1.00 -22.33 16.28 -57.17 -0.93 -23.26 16 8 C -0.78 -17.88 5.00 -38.87 -0.19 -18.07 16 9 C 0.00 -0.05 9.54 -39.66 -0.38 -0.43 16 10 C -0.25 -5.24 10.05 -39.29 -0.39 -5.63 16 11 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 12 C -0.16 -3.74 8.66 -38.87 -0.34 -4.08 16 13 C 0.19 4.70 5.26 -106.82 -0.56 4.14 16 14 C -0.44 -11.02 7.56 -37.74 -0.29 -11.31 16 15 H 0.09 2.14 5.85 -52.48 -0.31 1.83 16 16 C 0.08 2.00 5.13 -17.34 -0.09 1.91 16 17 N -0.77 -18.92 11.23 55.55 0.62 -18.30 16 18 Si 0.91 18.26 29.59 -169.99 -5.03 13.23 16 19 H -0.25 -5.02 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 22 C 0.21 3.26 6.75 -155.42 -1.05 2.21 16 23 N -0.48 -7.86 10.95 -10.82 -0.12 -7.98 16 24 C -0.03 -0.38 11.87 -17.82 -0.21 -0.59 16 25 C -0.06 -0.71 11.58 -16.56 -0.19 -0.91 16 26 N -0.46 -5.61 3.15 -121.28 -0.38 -5.99 16 27 C 0.07 0.54 10.64 59.85 0.64 1.18 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.09 1.46 6.89 -51.93 -0.36 1.10 16 31 H 0.42 7.80 8.32 -34.47 -0.29 7.51 16 32 H 0.11 2.11 7.32 -52.49 -0.38 1.73 16 33 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.12 2.84 6.51 -52.49 -0.34 2.49 16 36 H 0.29 6.34 8.30 -40.82 -0.34 6.00 16 37 H 0.17 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.68 7.62 -51.93 -0.40 0.28 16 41 H 0.09 0.47 8.13 -51.93 -0.42 0.05 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -32.21 355.57 -10.24 -42.45 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -4.93 Total: 13.81 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: -3.32 Total: -32.06 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.10 Total: -52.99 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -1.88 Total: -48.53 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 59.27 SS G_CDS: -0.53 Total: 58.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -10.24 -42.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.914 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds