Wall clock time and date at job start Tue Mar 31 2020 19:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46717 * 2 1 4 4 N 1.46503 * 109.47022 * 119.99854 * 2 1 3 5 5 S 1.65601 * 120.00088 * 263.59761 * 4 2 1 6 6 O 1.42097 * 106.39902 * 179.35288 * 5 4 2 7 7 O 1.42099 * 106.40351 * 312.27915 * 5 4 2 8 8 C 1.76202 * 107.21550 * 65.81807 * 5 4 2 9 9 C 1.37637 * 120.12633 * 245.61416 * 8 5 4 10 10 C 1.38620 * 120.24685 * 180.02562 * 9 8 5 11 11 C 1.38654 * 120.50216 * 359.97153 * 10 9 8 12 12 C 1.37596 * 120.24674 * 0.02636 * 11 10 9 13 13 C 1.40697 * 120.13048 * 65.33542 * 8 5 4 14 14 C 1.41403 * 120.24016 * 359.97438 * 13 8 5 15 15 H 1.08003 * 120.00046 * 329.91815 * 14 13 8 16 16 C 1.39945 * 119.99847 * 149.92124 * 14 13 8 17 17 N 1.30826 * 120.00045 * 343.76836 * 16 14 13 18 18 Si 1.86799 * 119.99989 * 163.77145 * 16 14 13 19 19 H 1.48496 * 109.47155 * 5.00744 * 18 16 14 20 20 H 1.48503 * 109.46906 * 125.00671 * 18 16 14 21 21 H 1.48501 * 109.47016 * 245.00570 * 18 16 14 22 22 C 1.50693 * 109.46943 * 240.00416 * 2 1 3 23 23 N 1.30504 * 125.65007 * 283.39112 * 22 2 1 24 24 C 1.34123 * 109.25813 * 179.97438 * 23 22 2 25 25 C 1.34663 * 108.01999 * 359.73055 * 24 23 22 26 26 N 1.35040 * 125.65438 * 103.35364 * 22 2 1 27 27 C 1.46497 * 126.39486 * 0.03311 * 26 22 2 28 28 H 1.08990 * 109.47078 * 59.99839 * 1 2 3 29 29 H 1.09003 * 109.46717 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46890 * 299.99693 * 1 2 3 31 31 H 0.96996 * 119.99663 * 83.60815 * 4 2 1 32 32 H 1.07998 * 119.87645 * 359.97438 * 9 8 5 33 33 H 1.08000 * 119.74353 * 179.97438 * 10 9 8 34 34 H 1.07995 * 119.87494 * 179.97438 * 11 10 9 35 35 H 1.08002 * 120.12486 * 179.97438 * 12 11 10 36 36 H 0.96994 * 120.00146 * 180.02562 * 17 16 14 37 37 H 1.08009 * 125.98955 * 179.97438 * 24 23 22 38 38 H 1.08008 * 126.59061 * 180.27975 * 25 24 23 39 39 H 1.09001 * 109.47401 * 84.79896 * 27 26 22 40 40 H 1.08999 * 109.47212 * 324.79208 * 27 26 22 41 41 H 1.09004 * 109.47059 * 204.79268 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 16 2.4452 0.1800 2.5387 6 8 2.8559 -0.7658 3.5164 7 8 3.2770 1.2381 2.0831 8 6 0.9782 0.9327 3.1602 9 6 0.8451 2.3026 3.1455 10 6 -0.3076 2.8974 3.6343 11 6 -1.3387 2.1219 4.1423 12 6 -1.2273 0.7507 4.1668 13 6 -0.0640 0.1355 3.6680 14 6 0.0589 -1.2731 3.6822 15 1 0.6489 -1.7713 2.9271 16 6 -0.5839 -2.0215 4.6747 17 7 -1.0256 -1.4318 5.7557 18 14 -0.8111 -3.8627 4.4560 19 1 -0.1220 -4.3027 3.2164 20 1 -0.2323 -4.5750 5.6235 21 1 -2.2595 -4.1741 4.3544 22 6 2.0323 -0.7103 -1.2305 23 7 2.0543 -2.0032 -1.4067 24 6 2.5653 -2.2762 -2.6164 25 6 2.8661 -1.1079 -3.2148 26 7 2.5336 -0.1145 -2.3338 27 6 2.6872 1.3263 -2.5498 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0918 -1.6578 1.2018 32 1 1.6421 2.9163 2.7525 33 1 -0.4033 3.9730 3.6192 34 1 -2.2321 2.5960 4.5209 35 1 -2.0315 0.1485 4.5634 36 1 -1.4708 -1.9506 6.4438 37 1 2.7067 -3.2603 -3.0383 38 1 3.2905 -0.9796 -4.1997 39 1 3.6285 1.6609 -2.1136 40 1 1.8595 1.8549 -2.0771 41 1 2.6881 1.5352 -3.6197 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601469681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:41 Heat of formation + Delta-G solvation = -15.809938 kcal Electronic energy + Delta-G solvation = -27592.178538 eV Core-core repulsion = 23791.959010 eV Total energy + Delta-G solvation = -3800.219528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.03382 -39.37027 -38.11832 -37.17627 -36.69097 -35.62953 -34.90707 -32.01094 -31.45917 -31.21081 -29.50023 -27.79267 -27.30113 -24.53035 -23.38321 -22.92190 -22.29947 -20.82408 -20.26885 -19.47351 -18.75105 -18.18843 -17.54445 -17.14095 -16.93221 -16.53987 -16.05369 -15.89548 -15.43350 -15.09231 -14.91179 -14.57240 -14.45387 -14.39583 -14.19737 -13.85289 -13.59938 -13.42705 -13.34112 -13.17546 -13.01204 -12.92223 -12.86230 -12.80257 -12.60682 -12.53300 -12.19428 -12.10972 -11.59834 -11.22769 -11.13991 -10.90336 -10.53316 -10.43038 -9.78777 -9.39217 -9.31362 -8.81205 -6.56611 -0.22960 0.56235 1.00022 1.09387 1.37181 1.49174 1.51902 1.88558 2.15516 2.17529 2.39587 2.64563 2.98484 3.30251 3.49135 3.75660 3.83959 4.00621 4.12688 4.22824 4.36734 4.42795 4.45540 4.54043 4.60623 4.72024 4.76373 4.77149 4.88681 5.00130 5.12463 5.16270 5.31098 5.32599 5.43463 5.55606 5.74454 5.83828 5.88888 6.04201 6.09883 6.13589 6.23323 6.51193 6.71421 6.86100 7.19112 8.17456 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.005213 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.714704 B = 5369.565317 C = 6487.354951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.244 3.756 3 H 0.107 0.893 4 N -1.102 6.102 5 S 2.716 3.284 6 O -0.999 6.999 7 O -1.006 7.006 8 C -0.784 4.784 9 C -0.012 4.012 10 C -0.245 4.245 11 C -0.072 4.072 12 C -0.184 4.184 13 C 0.173 3.827 14 C -0.476 4.476 15 H 0.089 0.911 16 C 0.045 3.955 17 N -0.804 5.804 18 Si 0.966 3.034 19 H -0.255 1.255 20 H -0.268 1.268 21 H -0.253 1.253 22 C 0.182 3.818 23 N -0.515 5.515 24 C -0.061 4.061 25 C -0.039 4.039 26 N -0.454 5.454 27 C 0.054 3.946 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.421 0.579 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.295 0.705 37 H 0.186 0.814 38 H 0.217 0.783 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 3.713 -16.428 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.135 3.865 3 H 0.125 0.875 4 N -0.861 5.861 5 S 2.813 3.187 6 O -0.989 6.989 7 O -0.996 6.996 8 C -0.879 4.879 9 C -0.032 4.032 10 C -0.265 4.265 11 C -0.091 4.091 12 C -0.204 4.204 13 C 0.169 3.831 14 C -0.504 4.504 15 H 0.107 0.893 16 C -0.173 4.173 17 N -0.427 5.427 18 Si 0.786 3.214 19 H -0.178 1.178 20 H -0.193 1.193 21 H -0.177 1.177 22 C -0.082 4.082 23 N -0.235 5.235 24 C -0.209 4.209 25 C -0.173 4.173 26 N -0.136 5.136 27 C -0.087 4.087 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.256 0.744 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.203 0.797 38 H 0.233 0.767 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.206 3.522 -15.331 15.884 hybrid contribution -0.544 -0.622 -0.043 0.828 sum 1.662 2.900 -15.373 15.733 Atomic orbital electron populations 1.22216 0.92850 1.03355 1.03234 1.18874 0.94753 0.94210 0.78643 0.87536 1.55427 1.83815 1.19768 1.27041 1.00463 0.74030 0.72250 0.71946 1.93497 1.82702 1.63211 1.59525 1.93410 1.66613 1.57524 1.82042 1.29985 1.20993 1.03833 1.33077 1.20574 0.96846 0.92189 0.93611 1.20869 0.95935 0.99282 1.10449 1.21221 0.98222 0.93743 0.95889 1.21399 0.98491 0.94448 1.06039 1.17169 0.88814 0.92349 0.84795 1.20110 1.26982 0.91981 1.11360 0.89325 1.26659 0.91702 1.05828 0.93150 1.69828 1.26675 1.40858 1.05380 0.85376 0.79745 0.76274 0.79975 1.17800 1.19273 1.17703 1.23054 1.04314 0.89265 0.91543 1.70070 1.20653 1.13037 1.19704 1.22782 1.06058 0.99952 0.92067 1.23337 1.07917 0.87159 0.98903 1.45533 1.45536 1.09296 1.13225 1.22494 1.04636 0.75359 1.06258 0.89715 0.92219 0.91567 0.74402 0.85636 0.85286 0.86035 0.87707 0.89417 0.79728 0.76662 0.89763 0.88653 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.83 9.50 71.98 0.68 -4.15 16 2 C 0.24 7.77 3.19 44.24 0.14 7.91 16 3 H 0.11 3.08 6.59 -2.39 -0.02 3.06 16 4 N -1.10 -42.05 4.61 -172.51 -0.80 -42.85 16 5 S 2.72 121.20 4.95 -56.49 -0.28 120.92 16 6 O -1.00 -52.40 16.57 -128.00 -2.12 -54.52 16 7 O -1.01 -44.49 16.28 -128.00 -2.08 -46.57 16 8 C -0.78 -36.45 5.00 22.73 0.11 -36.33 16 9 C -0.01 -0.52 9.54 22.22 0.21 -0.31 16 10 C -0.25 -9.67 10.05 22.46 0.23 -9.44 16 11 C -0.07 -3.02 10.02 22.22 0.22 -2.80 16 12 C -0.18 -8.91 8.66 22.73 0.20 -8.72 16 13 C 0.17 8.74 5.26 -21.29 -0.11 8.63 16 14 C -0.48 -24.49 7.56 23.46 0.18 -24.31 16 15 H 0.09 4.41 5.85 -2.91 -0.02 4.40 16 16 C 0.05 2.24 5.13 85.26 0.44 2.68 16 17 N -0.80 -40.64 11.23 21.83 0.25 -40.39 16 18 Si 0.97 38.31 29.59 68.60 2.03 40.34 16 19 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 22 C 0.18 5.45 6.75 138.13 0.93 6.38 16 23 N -0.51 -16.81 10.95 -188.14 -2.06 -18.87 16 24 C -0.06 -1.52 11.87 83.52 0.99 -0.53 16 25 C -0.04 -0.75 11.58 83.08 0.96 0.21 16 26 N -0.45 -10.00 3.15 -537.62 -1.69 -11.69 16 27 C 0.05 0.71 10.64 127.77 1.36 2.07 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.29 6.89 -2.39 -0.02 2.27 16 31 H 0.42 16.27 8.32 -96.75 -0.80 15.46 16 32 H 0.13 4.73 7.32 -2.91 -0.02 4.70 16 33 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.10 5.25 6.51 -2.91 -0.02 5.23 16 36 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 37 H 0.19 3.63 8.06 -2.91 -0.02 3.61 16 38 H 0.22 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.17 7.62 -2.39 -0.02 1.15 16 41 H 0.12 0.77 8.13 -2.38 -0.02 0.75 16 Total: -1.00 -71.31 355.57 0.05 -71.25 By element: Atomic # 1 Polarization: 40.82 SS G_CDS: 0.27 Total: 41.09 kcal Atomic # 6 Polarization: -65.25 SS G_CDS: 6.54 Total: -58.71 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -4.30 Total: -113.81 kcal Atomic # 8 Polarization: -96.89 SS G_CDS: -4.20 Total: -101.09 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Atomic # 16 Polarization: 121.20 SS G_CDS: -0.28 Total: 120.92 kcal Total: -71.31 0.05 -71.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601469681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.443 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds