Wall clock time and date at job start Tue Mar 31 2020 18:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47180 * 2 1 4 4 C 1.50704 * 109.46876 * 240.00378 * 2 1 3 5 5 N 1.30489 * 125.65114 * 264.69134 * 4 2 1 6 6 C 1.34135 * 109.25950 * 179.89305 * 5 4 2 7 7 C 1.34669 * 108.01551 * 0.37071 * 6 5 4 8 8 S 1.76204 * 126.58784 * 179.81026 * 7 6 5 9 9 O 1.42093 * 106.40355 * 18.90218 * 8 7 6 10 10 O 1.42101 * 106.39931 * 151.81796 * 8 7 6 11 11 N 1.65594 * 107.21964 * 265.35731 * 8 7 6 12 12 C 1.38859 * 119.99975 * 296.54037 * 11 8 7 13 13 C 1.39561 * 119.84586 * 284.19283 * 12 11 8 14 14 C 1.36345 * 120.16343 * 179.71637 * 13 12 11 15 15 C 1.40888 * 119.83038 * 0.55894 * 14 13 12 16 16 C 1.41141 * 120.14836 * 179.69860 * 15 14 13 17 17 H 1.08003 * 119.99559 * 208.94004 * 16 15 14 18 18 C 1.39858 * 120.00381 * 28.94275 * 16 15 14 19 19 N 1.30906 * 120.00121 * 10.99967 * 18 16 15 20 20 Si 1.86802 * 120.00179 * 190.99468 * 18 16 15 21 21 H 1.48497 * 109.46971 * 89.99960 * 20 18 16 22 22 H 1.48491 * 109.47417 * 210.00114 * 20 18 16 23 23 H 1.48500 * 109.47162 * 330.00393 * 20 18 16 24 24 C 1.40879 * 119.69351 * 359.71841 * 15 14 13 25 25 C 1.36343 * 119.83835 * 359.97438 * 24 15 14 26 26 N 1.35046 * 125.64643 * 85.00361 * 4 2 1 27 27 H 0.96992 * 126.40300 * 359.93561 * 26 4 2 28 28 H 1.08998 * 109.47024 * 59.99248 * 1 2 3 29 29 H 1.09000 * 109.46870 * 299.99848 * 1 2 3 30 30 H 1.08997 * 109.47287 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47024 * 120.00752 * 2 1 3 32 32 H 1.08992 * 109.47364 * 300.00351 * 3 2 1 33 33 H 1.09000 * 109.46592 * 60.00447 * 3 2 1 34 34 H 1.08997 * 109.47130 * 180.02562 * 3 2 1 35 35 H 1.08001 * 125.99157 * 180.18694 * 6 5 4 36 36 H 0.97000 * 120.00439 * 116.54171 * 11 8 7 37 37 H 1.08005 * 119.92113 * 359.97438 * 13 12 11 38 38 H 1.07996 * 120.08187 * 180.27545 * 14 13 12 39 39 H 0.96998 * 119.99955 * 179.97438 * 19 18 16 40 40 H 1.07998 * 120.08372 * 179.97438 * 24 15 14 41 41 H 1.07997 * 119.92297 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 7 2.3783 -1.9669 -1.2954 6 6 2.7719 -2.2534 -2.5453 7 6 2.6736 -1.1297 -3.2809 8 16 3.0715 -0.9539 -4.9884 9 8 3.0809 -2.2654 -5.5353 10 8 2.2467 0.0902 -5.4871 11 7 4.6298 -0.4003 -5.0741 12 6 4.9538 0.8453 -4.5529 13 6 4.6003 2.0025 -5.2483 14 6 4.9100 3.2290 -4.7396 15 6 5.5991 3.3260 -3.5146 16 6 5.9287 4.5921 -2.9850 17 1 6.8015 4.7049 -2.3589 18 6 5.1252 5.7005 -3.2709 19 7 3.9597 5.5339 -3.8433 20 14 5.7149 7.4188 -2.8359 21 1 6.4735 7.9860 -3.9796 22 1 4.5447 8.2838 -2.5404 23 1 6.5955 7.3525 -1.6420 24 6 5.9579 2.1535 -2.8210 25 6 5.6361 0.9338 -3.3385 26 7 2.2045 -0.1504 -2.4473 27 1 2.0283 0.7730 -2.6862 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 3.1114 -3.2158 -2.8989 36 1 5.3164 -0.9461 -5.4885 37 1 4.0764 1.9265 -6.1897 38 1 4.6319 4.1237 -5.2767 39 1 3.4023 6.3027 -4.0412 40 1 6.4865 2.2205 -1.8816 41 1 5.9108 0.0341 -2.8081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610254565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:47 Heat of formation + Delta-G solvation = -14.490137 kcal Electronic energy + Delta-G solvation = -27086.018364 eV Core-core repulsion = 23285.856066 eV Total energy + Delta-G solvation = -3800.162297 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09064 -38.14955 -36.87117 -35.56353 -35.50643 -34.89716 -32.94566 -32.48557 -29.74058 -29.13011 -28.87874 -27.28253 -24.88766 -23.39104 -21.71127 -21.22352 -21.01379 -20.33332 -19.29783 -18.22361 -17.54579 -17.28183 -16.68520 -15.65514 -15.41068 -15.33380 -14.94600 -14.66288 -14.20759 -14.12581 -13.78343 -13.68930 -13.07453 -12.96292 -12.48764 -12.31919 -12.26680 -11.90032 -11.78824 -11.73467 -11.70365 -11.58300 -11.52291 -11.32730 -11.31183 -11.06839 -10.90412 -10.72474 -10.27062 -10.08833 -10.04693 -9.91826 -9.46161 -9.01189 -8.76056 -7.79955 -7.49617 -6.97456 -4.62038 0.65139 1.61625 2.46739 2.88109 2.94588 2.95892 2.97167 2.99884 3.09832 3.47165 3.75262 4.00458 4.19240 4.38304 4.71009 4.78896 4.95354 5.07112 5.31384 5.39442 5.42795 5.48733 5.67702 5.73464 5.79643 5.98727 6.03558 6.06980 6.17191 6.18393 6.21677 6.58029 6.75098 6.82633 6.96585 7.05609 7.26753 7.30560 7.37891 7.72367 7.81889 7.88953 7.94272 8.03059 8.38861 8.62376 8.71010 9.95116 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.004626 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.572801 B = 6051.277163 C = 7621.974660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 C -0.157 4.157 4 C 0.259 3.741 5 N -0.500 5.500 6 C 0.092 3.908 7 C -0.582 4.582 8 S 2.699 3.301 9 O -0.968 6.968 10 O -0.953 6.953 11 N -1.027 6.027 12 C -0.037 4.037 13 C -0.077 4.077 14 C -0.160 4.160 15 C 0.120 3.880 16 C -0.448 4.448 17 H 0.081 0.919 18 C 0.072 3.928 19 N -0.786 5.786 20 Si 0.914 3.086 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.222 4.222 25 C -0.072 4.072 26 N -0.498 5.498 27 H 0.431 0.569 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.183 0.817 36 H 0.409 0.591 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.284 0.716 40 H 0.096 0.904 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.311 -5.732 4.517 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.215 4.215 4 C -0.007 4.007 5 N -0.220 5.220 6 C -0.064 4.064 7 C -0.779 4.779 8 S 2.788 3.212 9 O -0.958 6.958 10 O -0.943 6.943 11 N -0.782 5.782 12 C -0.133 4.133 13 C -0.098 4.098 14 C -0.180 4.180 15 C 0.117 3.883 16 C -0.477 4.477 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.411 5.411 20 Si 0.738 3.262 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.243 4.243 25 C -0.093 4.093 26 N -0.098 5.098 27 H 0.271 0.729 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.200 0.800 36 H 0.246 0.754 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.292 -6.302 4.451 8.828 hybrid contribution 0.634 1.449 -0.039 1.582 sum -3.658 -4.853 4.412 7.510 Atomic orbital electron populations 1.21865 0.93194 1.02699 1.02631 1.19761 0.96250 0.95554 0.92001 1.21947 1.02571 0.93896 1.03085 1.23736 0.99247 0.89946 0.87817 1.70303 1.18688 1.12473 1.20494 1.22333 0.97892 0.97393 0.88796 1.33841 1.24142 0.96811 1.23134 1.02412 0.73608 0.72933 0.72277 1.93552 1.86805 1.39417 1.76008 1.93579 1.66788 1.57123 1.76801 1.52204 1.27350 1.25920 1.72696 1.16645 1.16143 0.82347 0.98156 1.20794 0.98513 0.92379 0.98093 1.21057 1.04373 0.95942 0.96650 1.17767 0.88277 0.92355 0.89902 1.19676 1.09530 0.92139 1.26366 0.90061 1.25982 0.93938 1.01738 0.93028 1.69812 1.07671 1.33399 1.30214 0.86205 0.79344 0.80607 0.80040 1.19102 1.20110 1.18512 1.20687 1.10584 0.92166 1.00850 1.20520 0.97779 0.96709 0.94312 1.42823 1.46687 1.12134 1.08187 0.72854 0.92413 0.91165 0.91875 0.87679 0.92177 0.90878 0.91273 0.79977 0.75363 0.88204 0.85789 0.90449 0.88560 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.18 37.16 0.34 -1.10 16 2 C -0.02 -0.18 3.39 -91.77 -0.31 -0.49 16 3 C -0.16 -1.82 8.94 37.16 0.33 -1.49 16 4 C 0.26 3.90 6.87 -155.42 -1.07 2.83 16 5 N -0.50 -8.16 11.25 -10.81 -0.12 -8.28 16 6 C 0.09 1.47 11.60 -17.81 -0.21 1.26 16 7 C -0.58 -9.65 7.19 -16.56 -0.12 -9.77 16 8 S 2.70 46.28 5.87 -107.50 -0.63 45.65 16 9 O -0.97 -17.33 17.83 -57.18 -1.02 -18.35 16 10 O -0.95 -19.08 17.10 -57.18 -0.98 -20.06 16 11 N -1.03 -17.11 5.65 32.51 0.18 -16.93 16 12 C -0.04 -0.72 5.78 -83.69 -0.48 -1.21 16 13 C -0.08 -1.67 9.23 -39.77 -0.37 -2.04 16 14 C -0.16 -3.78 8.60 -39.26 -0.34 -4.12 16 15 C 0.12 2.86 5.55 -106.79 -0.59 2.27 16 16 C -0.45 -10.64 9.04 -37.88 -0.34 -10.98 16 17 H 0.08 1.86 7.87 -52.48 -0.41 1.44 16 18 C 0.07 1.63 5.24 -17.34 -0.09 1.54 16 19 N -0.79 -18.46 10.86 55.54 0.60 -17.86 16 20 Si 0.91 17.05 29.57 -169.99 -5.03 12.03 16 21 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 22 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 24 C -0.22 -4.82 9.74 -39.27 -0.38 -5.21 16 25 C -0.07 -1.43 9.90 -39.77 -0.39 -1.82 16 26 N -0.50 -7.96 5.91 -9.45 -0.06 -8.02 16 27 H 0.43 6.78 8.16 -40.82 -0.33 6.45 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.74 7.42 -51.93 -0.39 0.35 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.18 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.41 5.70 8.95 -34.47 -0.31 5.40 16 37 H 0.10 2.11 7.97 -52.48 -0.42 1.69 16 38 H 0.12 3.06 6.23 -52.49 -0.33 2.74 16 39 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 40 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -28.99 363.52 -10.71 -39.70 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -5.12 Total: 16.95 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: -4.02 Total: -30.31 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.61 Total: -51.08 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.00 Total: -38.40 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 46.28 SS G_CDS: -0.63 Total: 45.65 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.99 -10.71 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610254565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.211 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds