Wall clock time and date at job start Tue Mar 31 2020 18:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46902 * 2 1 4 4 N 1.46499 * 109.47416 * 240.00202 * 2 1 3 5 5 C 1.34963 * 125.97218 * 84.71517 * 4 2 1 6 6 C 1.35242 * 107.86162 * 179.83921 * 5 4 2 7 7 C 1.40430 * 107.86338 * 0.42229 * 6 5 4 8 8 N 1.39985 * 125.97748 * 179.70113 * 7 6 5 9 9 S 1.65598 * 119.99949 * 180.02562 * 8 7 6 10 10 O 1.42104 * 106.39971 * 178.54406 * 9 8 7 11 11 O 1.42101 * 106.40286 * 311.45722 * 9 8 7 12 12 C 1.76195 * 107.21968 * 65.00131 * 9 8 7 13 13 C 1.38662 * 119.87510 * 269.72283 * 12 9 8 14 14 C 1.38611 * 120.50062 * 179.71876 * 13 12 9 15 15 C 1.37634 * 120.24585 * 0.56172 * 14 13 12 16 16 C 1.40701 * 119.74904 * 359.71817 * 15 14 13 17 17 C 1.41393 * 120.24703 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00004 * 155.25993 * 17 16 15 19 19 C 1.39953 * 119.99753 * 335.25604 * 17 16 15 20 20 N 1.30825 * 120.00061 * 342.24247 * 19 17 16 21 21 Si 1.86800 * 119.99591 * 162.23854 * 19 17 16 22 22 H 1.48493 * 109.47460 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46982 * 120.00280 * 21 19 17 24 24 H 1.48501 * 109.46965 * 240.00178 * 21 19 17 25 25 C 1.37596 * 119.87672 * 90.00258 * 12 9 8 26 26 N 1.31219 * 108.04694 * 359.73915 * 7 6 5 27 27 H 1.09005 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46966 * 60.00003 * 1 2 3 29 29 H 1.08996 * 109.47560 * 299.99761 * 1 2 3 30 30 H 1.08994 * 109.47222 * 119.99579 * 2 1 3 31 31 H 1.08993 * 109.47243 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46939 * 300.00358 * 3 2 1 33 33 H 1.09008 * 109.46539 * 60.00094 * 3 2 1 34 34 H 1.08001 * 126.06800 * 0.02562 * 5 4 2 35 35 H 1.08004 * 126.07085 * 180.12638 * 6 5 4 36 36 H 0.97002 * 119.99786 * 0.02562 * 8 7 6 37 37 H 1.08001 * 119.74607 * 0.02562 * 13 12 9 38 38 H 1.08000 * 119.87428 * 180.26162 * 14 13 12 39 39 H 1.08008 * 120.12817 * 179.74654 * 15 14 13 40 40 H 0.97003 * 119.99551 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.12534 * 359.97359 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1878 -0.1391 -2.4163 6 6 2.6563 -1.1002 -3.2445 7 6 2.7691 -2.2886 -2.5049 8 7 3.2125 -3.5229 -2.9944 9 16 3.2868 -4.8349 -1.9868 10 8 3.7355 -5.9252 -2.7801 11 8 3.9578 -4.4009 -0.8117 12 6 1.6356 -5.2165 -1.5047 13 6 1.0973 -4.6373 -0.3657 14 6 -0.2022 -4.9238 0.0222 15 6 -0.9692 -5.7973 -0.7148 16 6 -0.4314 -6.3955 -1.8692 17 6 -1.2101 -7.2939 -2.6345 18 1 -0.9908 -7.4418 -3.6815 19 6 -2.2649 -7.9914 -2.0351 20 7 -2.3251 -8.0932 -0.7322 21 14 -3.5870 -8.7770 -3.0954 22 1 -3.2906 -8.5200 -4.5276 23 1 -3.6123 -10.2415 -2.8508 24 1 -4.9089 -8.1947 -2.7507 25 6 0.8872 -6.0926 -2.2567 26 7 2.3854 -2.0400 -1.2750 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.1299 1.4427 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6765 1.9564 0.8901 34 1 1.9880 0.8882 -2.6831 35 1 2.8960 -0.9769 -4.2903 36 1 3.4763 -3.6095 -3.9238 37 1 1.6934 -3.9539 0.2209 38 1 -0.6128 -4.4637 0.9089 39 1 -1.9801 -6.0223 -0.4085 40 1 -3.0561 -8.5770 -0.3168 41 1 1.3099 -6.5458 -3.1413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619468359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:41 Heat of formation + Delta-G solvation = 22.913727 kcal Electronic energy + Delta-G solvation = -26803.785138 eV Core-core repulsion = 23005.244794 eV Total energy + Delta-G solvation = -3798.540344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.17893 -37.55959 -36.71372 -36.28662 -35.29350 -34.09187 -33.76189 -30.07977 -29.94816 -29.69329 -28.89180 -27.51557 -25.39519 -23.10026 -21.83587 -21.16554 -20.87875 -20.35994 -18.73432 -17.85995 -17.37338 -16.82901 -16.32891 -15.87082 -15.27800 -15.04893 -14.84693 -14.52773 -14.36831 -13.67082 -13.44640 -13.41333 -13.26205 -13.18971 -12.57785 -12.53515 -12.40341 -11.88563 -11.83988 -11.78162 -11.52762 -11.48791 -11.35299 -11.30720 -11.29966 -11.12617 -10.96060 -10.80702 -10.56553 -10.31454 -9.65768 -9.47332 -9.29047 -8.80376 -8.20733 -7.96555 -7.59918 -6.85247 -4.45606 0.91638 2.00365 2.24385 2.41647 2.70245 2.97063 3.03589 3.08622 3.11517 3.50346 3.88115 4.23578 4.34175 4.50345 4.67288 4.72903 4.87201 4.91804 5.04172 5.22699 5.34790 5.45403 5.48490 5.59915 5.67666 5.73293 5.79722 5.91888 6.03720 6.12412 6.38624 6.61601 6.73428 6.82795 6.92953 7.06997 7.12229 7.14448 7.29151 7.49402 7.81807 7.86119 7.87513 8.01451 8.47047 8.74519 8.79598 10.10897 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.003933 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.808707 B = 7118.207536 C = 8233.905163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 C -0.163 4.163 4 N -0.358 5.358 5 C 0.072 3.928 6 C -0.287 4.287 7 C 0.319 3.681 8 N -1.020 6.020 9 S 2.680 3.320 10 O -0.965 6.965 11 O -0.951 6.951 12 C -0.628 4.628 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.110 4.110 16 C 0.089 3.911 17 C -0.464 4.464 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.798 5.798 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.272 1.272 25 C -0.127 4.127 26 N -0.300 5.300 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.173 0.827 35 H 0.149 0.851 36 H 0.430 0.570 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.282 0.718 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 17.514 -1.552 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.055 3.945 3 C -0.221 4.221 4 N -0.141 5.141 5 C -0.075 4.075 6 C -0.320 4.320 7 C 0.060 3.940 8 N -0.770 5.770 9 S 2.778 3.222 10 O -0.955 6.955 11 O -0.941 6.941 12 C -0.722 4.722 13 C -0.136 4.136 14 C -0.149 4.149 15 C -0.130 4.130 16 C 0.085 3.915 17 C -0.494 4.494 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.423 5.423 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.197 1.197 25 C -0.149 4.149 26 N -0.129 5.129 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.190 0.810 35 H 0.167 0.833 36 H 0.266 0.734 37 H 0.134 0.866 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.092 0.908 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.250 16.524 0.308 17.064 hybrid contribution -1.257 -0.115 -1.668 2.092 sum 2.992 16.409 -1.360 16.735 Atomic orbital electron populations 1.22265 0.93519 1.04049 1.02685 1.21262 0.94869 0.92299 0.86043 1.22194 1.02319 0.94114 1.03470 1.48418 1.51135 1.06182 1.08367 1.22276 1.00203 0.99644 0.85403 1.21096 1.17706 0.91603 1.01603 1.18700 0.96707 0.86607 0.91956 1.53099 1.78072 1.20013 1.25844 1.02095 0.75609 0.71615 0.72914 1.93563 1.81391 1.50179 1.70405 1.93544 1.72860 1.80989 1.46693 1.29480 1.22159 1.12717 1.07817 1.20221 0.96117 1.01269 0.96004 1.20802 0.94734 0.99925 0.99390 1.21653 0.99725 0.95117 0.96526 1.17639 0.90296 0.91279 0.92245 1.19592 1.11521 1.20670 0.97591 0.90041 1.25909 0.98164 0.95032 0.95115 1.69798 1.29269 1.32621 1.10620 0.86228 0.80179 0.78928 0.81238 1.18302 1.19899 1.19708 1.20749 0.94229 0.99747 1.00171 1.77680 1.25083 0.93998 1.16100 0.90880 0.92040 0.90652 0.87669 0.91450 0.91621 0.90037 0.81002 0.83337 0.73409 0.86622 0.88605 0.85875 0.90754 0.87169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 9.52 37.16 0.35 -1.20 16 2 C 0.16 1.56 3.93 -67.93 -0.27 1.29 16 3 C -0.16 -1.03 8.84 37.16 0.33 -0.70 16 4 N -0.36 -4.75 3.52 -54.88 -0.19 -4.94 16 5 C 0.07 0.79 10.58 -17.24 -0.18 0.61 16 6 C -0.29 -3.66 10.83 -39.82 -0.43 -4.09 16 7 C 0.32 5.26 7.72 -154.55 -1.19 4.07 16 8 N -1.02 -16.56 5.91 31.39 0.19 -16.38 16 9 S 2.68 54.53 5.49 -107.50 -0.59 53.94 16 10 O -0.96 -21.06 17.27 -57.17 -0.99 -22.04 16 11 O -0.95 -21.18 16.48 -57.17 -0.94 -22.12 16 12 C -0.63 -14.60 5.90 -39.66 -0.23 -14.83 16 13 C -0.11 -2.65 8.71 -39.29 -0.34 -2.99 16 14 C -0.13 -3.01 10.02 -39.66 -0.40 -3.41 16 15 C -0.11 -2.83 8.70 -38.87 -0.34 -3.16 16 16 C 0.09 2.37 5.57 -106.82 -0.60 1.77 16 17 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 18 H 0.08 2.06 7.91 -52.49 -0.41 1.65 16 19 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 20 N -0.80 -20.38 10.97 55.55 0.61 -19.77 16 21 Si 0.91 18.47 29.60 -169.99 -5.03 13.44 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.13 -3.19 9.26 -38.87 -0.36 -3.55 16 26 N -0.30 -5.28 10.05 31.41 0.32 -4.97 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.34 7.15 -51.93 -0.37 -0.03 16 33 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 34 H 0.17 1.15 7.26 -52.49 -0.38 0.77 16 35 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 36 H 0.43 5.36 8.96 -34.47 -0.31 5.05 16 37 H 0.12 2.55 6.86 -52.49 -0.36 2.19 16 38 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.12 3.20 6.18 -52.48 -0.32 2.87 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 41 H 0.11 2.63 7.60 -52.49 -0.40 2.23 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -34.11 359.53 -10.38 -44.49 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.08 Total: 9.93 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: -4.09 Total: -37.00 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.92 Total: -46.06 kcal Atomic # 8 Polarization: -42.24 SS G_CDS: -1.93 Total: -44.17 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.59 Total: 53.94 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.11 -10.38 -44.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619468359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.406 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds