Wall clock time and date at job start Tue Mar 31 2020 18:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46902 * 2 1 4 4 N 1.46499 * 109.47416 * 240.00202 * 2 1 3 5 5 C 1.34963 * 125.97218 * 84.71517 * 4 2 1 6 6 C 1.35242 * 107.86162 * 179.83921 * 5 4 2 7 7 C 1.40430 * 107.86338 * 0.42229 * 6 5 4 8 8 N 1.39985 * 125.97748 * 179.70113 * 7 6 5 9 9 S 1.65598 * 119.99949 * 180.02562 * 8 7 6 10 10 O 1.42104 * 106.39971 * 178.54406 * 9 8 7 11 11 O 1.42101 * 106.40286 * 311.45722 * 9 8 7 12 12 C 1.76195 * 107.21968 * 65.00131 * 9 8 7 13 13 C 1.38662 * 119.87510 * 269.72283 * 12 9 8 14 14 C 1.38611 * 120.50062 * 179.71876 * 13 12 9 15 15 C 1.37634 * 120.24585 * 0.56172 * 14 13 12 16 16 C 1.40701 * 119.74904 * 359.71817 * 15 14 13 17 17 C 1.41393 * 120.24703 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00004 * 155.25993 * 17 16 15 19 19 C 1.39953 * 119.99753 * 335.25604 * 17 16 15 20 20 N 1.30825 * 120.00061 * 342.24247 * 19 17 16 21 21 Si 1.86800 * 119.99591 * 162.23854 * 19 17 16 22 22 H 1.48493 * 109.47460 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.46982 * 120.00280 * 21 19 17 24 24 H 1.48501 * 109.46965 * 240.00178 * 21 19 17 25 25 C 1.37596 * 119.87672 * 90.00258 * 12 9 8 26 26 N 1.31219 * 108.04694 * 359.73915 * 7 6 5 27 27 H 1.09005 * 109.46910 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46966 * 60.00003 * 1 2 3 29 29 H 1.08996 * 109.47560 * 299.99761 * 1 2 3 30 30 H 1.08994 * 109.47222 * 119.99579 * 2 1 3 31 31 H 1.08993 * 109.47243 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.46939 * 300.00358 * 3 2 1 33 33 H 1.09008 * 109.46539 * 60.00094 * 3 2 1 34 34 H 1.08001 * 126.06800 * 0.02562 * 5 4 2 35 35 H 1.08004 * 126.07085 * 180.12638 * 6 5 4 36 36 H 0.97002 * 119.99786 * 0.02562 * 8 7 6 37 37 H 1.08001 * 119.74607 * 0.02562 * 13 12 9 38 38 H 1.08000 * 119.87428 * 180.26162 * 14 13 12 39 39 H 1.08008 * 120.12817 * 179.74654 * 15 14 13 40 40 H 0.97003 * 119.99551 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.12534 * 359.97359 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1878 -0.1391 -2.4163 6 6 2.6563 -1.1002 -3.2445 7 6 2.7691 -2.2886 -2.5049 8 7 3.2125 -3.5229 -2.9944 9 16 3.2868 -4.8349 -1.9868 10 8 3.7355 -5.9252 -2.7801 11 8 3.9578 -4.4009 -0.8117 12 6 1.6356 -5.2165 -1.5047 13 6 1.0973 -4.6373 -0.3657 14 6 -0.2022 -4.9238 0.0222 15 6 -0.9692 -5.7973 -0.7148 16 6 -0.4314 -6.3955 -1.8692 17 6 -1.2101 -7.2939 -2.6345 18 1 -0.9908 -7.4418 -3.6815 19 6 -2.2649 -7.9914 -2.0351 20 7 -2.3251 -8.0932 -0.7322 21 14 -3.5870 -8.7770 -3.0954 22 1 -3.2906 -8.5200 -4.5276 23 1 -3.6123 -10.2415 -2.8508 24 1 -4.9089 -8.1947 -2.7507 25 6 0.8872 -6.0926 -2.2567 26 7 2.3854 -2.0400 -1.2750 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.1299 1.4427 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6765 1.9564 0.8901 34 1 1.9880 0.8882 -2.6831 35 1 2.8960 -0.9769 -4.2903 36 1 3.4763 -3.6095 -3.9238 37 1 1.6934 -3.9539 0.2209 38 1 -0.6128 -4.4637 0.9089 39 1 -1.9801 -6.0223 -0.4085 40 1 -3.0561 -8.5770 -0.3168 41 1 1.3099 -6.5458 -3.1413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619468359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:40 Heat of formation + Delta-G solvation = 0.464696 kcal Electronic energy + Delta-G solvation = -26804.758601 eV Core-core repulsion = 23005.244794 eV Total energy + Delta-G solvation = -3799.513807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.19070 -39.46372 -38.38516 -37.30836 -37.02794 -35.66878 -35.16846 -31.92856 -31.63677 -31.00497 -29.88559 -28.12037 -27.33819 -24.06581 -23.66741 -22.83641 -22.25233 -21.40159 -20.31050 -19.52571 -18.47080 -18.30108 -17.73723 -17.39781 -16.89344 -16.60729 -16.27203 -16.12228 -15.31952 -15.19501 -15.09482 -14.54209 -14.42361 -14.32145 -14.04035 -13.73016 -13.33517 -13.32749 -13.26619 -13.14064 -13.11362 -13.07521 -12.99721 -12.86259 -12.69606 -12.60556 -12.20534 -12.09539 -11.95609 -11.58704 -11.41154 -11.31253 -11.14807 -9.90977 -9.88290 -9.54679 -9.25521 -8.72846 -6.44977 -0.70500 0.37839 0.83948 1.03899 1.36530 1.38559 1.44816 1.52559 1.87672 2.10147 2.18210 2.51592 2.70639 3.38289 3.44845 3.55190 3.90680 3.99796 4.03577 4.19087 4.26836 4.49803 4.56869 4.71026 4.77967 4.81509 4.85506 4.87479 4.88934 4.91656 4.99359 5.06343 5.20246 5.24004 5.31098 5.39055 5.57308 5.62260 5.87264 5.91388 5.93901 6.08496 6.27942 6.50898 6.79293 6.79585 6.83880 8.26056 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.003933 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.808707 B = 7118.207536 C = 8233.905163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 C -0.153 4.153 4 N -0.359 5.359 5 C 0.088 3.912 6 C -0.296 4.296 7 C 0.288 3.712 8 N -1.006 6.006 9 S 2.713 3.287 10 O -0.982 6.982 11 O -0.970 6.970 12 C -0.636 4.636 13 C -0.115 4.115 14 C -0.129 4.129 15 C -0.131 4.131 16 C 0.061 3.939 17 C -0.500 4.500 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.827 5.827 21 Si 0.986 3.014 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.148 4.148 26 N -0.356 5.356 27 H 0.034 0.966 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.223 0.777 35 H 0.177 0.823 36 H 0.446 0.554 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.291 0.709 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.308 20.009 -2.392 20.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.211 4.211 4 N -0.143 5.143 5 C -0.060 4.060 6 C -0.328 4.328 7 C 0.030 3.970 8 N -0.762 5.762 9 S 2.807 3.193 10 O -0.972 6.972 11 O -0.960 6.960 12 C -0.727 4.727 13 C -0.136 4.136 14 C -0.148 4.148 15 C -0.151 4.151 16 C 0.058 3.942 17 C -0.529 4.529 18 H 0.098 0.902 19 C -0.179 4.179 20 N -0.453 5.453 21 Si 0.806 3.194 22 H -0.181 1.181 23 H -0.191 1.191 24 H -0.185 1.185 25 C -0.169 4.169 26 N -0.185 5.185 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.239 0.761 35 H 0.194 0.806 36 H 0.286 0.714 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.736 19.013 -0.517 19.383 hybrid contribution -1.033 -0.731 -1.336 1.840 sum 2.703 18.282 -1.853 18.573 Atomic orbital electron populations 1.22226 0.93076 1.02068 1.04530 1.21603 0.95227 0.94044 0.84586 1.22170 1.01940 0.91402 1.05543 1.48746 1.50503 1.04935 1.10071 1.23061 0.97713 1.01309 0.83887 1.21493 1.17955 0.90274 1.03110 1.19090 0.97944 0.87183 0.92754 1.52522 1.78154 1.19265 1.26282 1.01063 0.73932 0.71664 0.72594 1.93531 1.81181 1.51893 1.70636 1.93514 1.72621 1.81494 1.48324 1.29954 1.23679 1.11632 1.07398 1.20389 0.96108 1.01084 0.96011 1.21082 0.94780 0.99108 0.99811 1.21636 0.99754 0.96490 0.97233 1.18006 0.91208 0.91946 0.93010 1.19865 1.13301 1.21943 0.97791 0.90152 1.26793 0.99698 0.95057 0.96364 1.69837 1.30193 1.33042 1.12202 0.85100 0.77068 0.78050 0.79160 1.18059 1.19083 1.18523 1.20855 0.94268 1.00857 1.00909 1.77514 1.26650 0.97036 1.17324 0.94669 0.90882 0.88122 0.89339 0.91947 0.89573 0.87943 0.76075 0.80581 0.71396 0.85738 0.86035 0.86801 0.89786 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.52 71.98 0.69 -2.05 16 2 C 0.15 2.66 3.93 44.99 0.18 2.83 16 3 C -0.15 -1.41 8.84 71.99 0.64 -0.77 16 4 N -0.36 -8.97 3.52 -327.54 -1.15 -10.12 16 5 C 0.09 1.65 10.58 83.52 0.88 2.54 16 6 C -0.30 -6.83 10.83 22.11 0.24 -6.60 16 7 C 0.29 9.28 7.72 133.39 1.03 10.31 16 8 N -1.01 -32.48 5.91 -54.61 -0.32 -32.80 16 9 S 2.71 111.96 5.49 -56.49 -0.31 111.65 16 10 O -0.98 -43.41 17.27 -128.00 -2.21 -45.62 16 11 O -0.97 -43.74 16.48 -128.00 -2.11 -45.85 16 12 C -0.64 -30.39 5.90 22.22 0.13 -30.25 16 13 C -0.11 -5.44 8.71 22.46 0.20 -5.24 16 14 C -0.13 -6.16 10.02 22.22 0.22 -5.94 16 15 C -0.13 -6.99 8.70 22.73 0.20 -6.79 16 16 C 0.06 3.41 5.57 -21.29 -0.12 3.29 16 17 C -0.50 -27.26 9.05 23.46 0.21 -27.05 16 18 H 0.08 4.22 7.91 -2.92 -0.02 4.20 16 19 C 0.04 1.80 5.14 85.26 0.44 2.24 16 20 N -0.83 -43.08 10.97 21.83 0.24 -42.84 16 21 Si 0.99 37.96 29.60 68.60 2.03 39.99 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 25 C -0.15 -7.69 9.26 22.73 0.21 -7.48 16 26 N -0.36 -12.46 10.05 -54.55 -0.55 -13.01 16 27 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.46 7.15 -2.39 -0.02 0.44 16 33 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.22 1.75 7.26 -2.91 -0.02 1.73 16 35 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 36 H 0.45 10.84 8.96 -96.74 -0.87 9.98 16 37 H 0.12 5.63 6.86 -2.91 -0.02 5.61 16 38 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 39 H 0.11 6.16 6.18 -2.91 -0.02 6.14 16 40 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 41 H 0.11 5.60 7.60 -2.91 -0.02 5.57 16 Total: -1.00 -77.06 359.53 0.96 -76.10 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.20 Total: 33.45 kcal Atomic # 6 Polarization: -76.09 SS G_CDS: 5.14 Total: -70.95 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -1.79 Total: -98.77 kcal Atomic # 8 Polarization: -87.14 SS G_CDS: -4.32 Total: -91.46 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Atomic # 16 Polarization: 111.96 SS G_CDS: -0.31 Total: 111.65 kcal Total: -77.06 0.96 -76.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619468359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.565 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds