Wall clock time and date at job start Tue Mar 31 2020 19:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46772 * 2 1 4 4 C 1.52998 * 109.47114 * 239.99835 * 2 1 3 5 5 N 1.46504 * 109.46884 * 175.00059 * 4 2 1 6 6 C 1.36881 * 126.39711 * 269.71593 * 5 4 2 7 7 C 1.34673 * 106.81875 * 179.84579 * 6 5 4 8 8 N 1.34133 * 108.01831 * 0.41656 * 7 6 5 9 9 C 1.30502 * 109.25553 * 359.73706 * 8 7 6 10 10 N 1.46502 * 109.47035 * 119.99840 * 2 1 3 11 11 S 1.65599 * 119.99996 * 265.00165 * 10 2 1 12 12 O 1.42100 * 106.40152 * 178.53774 * 11 10 2 13 13 O 1.42099 * 106.40104 * 311.46024 * 11 10 2 14 14 C 1.76203 * 107.21852 * 64.99822 * 11 10 2 15 15 C 1.38654 * 119.87739 * 269.72785 * 14 11 10 16 16 C 1.38618 * 120.49880 * 179.71981 * 15 14 11 17 17 C 1.37634 * 120.24737 * 0.55300 * 16 15 14 18 18 C 1.40698 * 119.74651 * 359.72582 * 17 16 15 19 19 C 1.41401 * 120.24091 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99631 * 204.37935 * 19 18 17 21 21 C 1.39938 * 120.00123 * 24.37355 * 19 18 17 22 22 N 1.30821 * 120.00141 * 17.87188 * 21 19 18 23 23 Si 1.86807 * 119.99819 * 197.86695 * 21 19 18 24 24 H 1.48498 * 109.47068 * 60.00427 * 23 21 19 25 25 H 1.48505 * 109.46911 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47121 * 300.00412 * 23 21 19 27 27 C 1.37597 * 119.87280 * 89.99731 * 14 11 10 28 28 H 1.09002 * 109.46772 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47228 * 300.00271 * 1 2 3 30 30 H 1.09006 * 109.46519 * 60.00292 * 1 2 3 31 31 H 1.09000 * 109.47208 * 55.00376 * 4 2 1 32 32 H 1.09001 * 109.47407 * 295.00164 * 4 2 1 33 33 H 1.08003 * 126.59042 * 359.97438 * 6 5 4 34 34 H 1.07993 * 125.99221 * 180.11830 * 7 6 5 35 35 H 1.07994 * 125.65001 * 180.02562 * 9 8 7 36 36 H 0.97003 * 119.99508 * 85.00092 * 10 2 1 37 37 H 1.07994 * 119.74846 * 359.97438 * 15 14 11 38 38 H 1.08004 * 119.86888 * 180.25432 * 16 15 14 39 39 H 1.08009 * 120.12467 * 179.74208 * 17 16 15 40 40 H 0.97004 * 119.99814 * 179.97438 * 22 21 19 41 41 H 1.07999 * 120.13111 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.6179 -1.3109 6 6 4.2191 0.3711 -1.9262 7 6 5.5207 0.0809 -1.7386 8 7 5.5945 -1.0593 -1.0360 9 6 4.3881 -1.4836 -0.7762 10 7 2.0184 -0.6906 1.1962 11 16 2.4122 0.1772 2.5505 12 8 2.8123 -0.7697 3.5316 13 8 3.2436 1.2443 2.1156 14 6 0.9274 0.9148 3.1474 15 6 0.5558 2.1751 2.7045 16 6 -0.6125 2.7651 3.1612 17 6 -1.4114 2.1088 4.0696 18 6 -1.0413 0.8319 4.5303 19 6 -1.8546 0.1480 5.4632 20 1 -1.4233 -0.6061 6.1048 21 6 -3.2182 0.4484 5.5552 22 7 -3.8158 1.0818 4.5788 23 14 -4.1853 -0.0551 7.0720 24 1 -3.5943 0.5894 8.2723 25 1 -5.5987 0.3759 6.9236 26 1 -4.1319 -1.5311 7.2258 27 6 0.1440 0.2403 4.0554 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.6055 -0.2618 -2.1370 32 1 1.7517 -1.7715 -1.2056 33 1 3.8193 1.2219 -2.4580 34 1 6.3583 0.6615 -2.0959 35 1 4.1407 -2.3785 -0.2246 36 1 2.1110 -1.6562 1.1949 37 1 1.1792 2.6993 1.9954 38 1 -0.8943 3.7454 2.8063 39 1 -2.3192 2.5721 4.4273 40 1 -4.7612 1.2896 4.6425 41 1 0.4373 -0.7396 4.4020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:26 Heat of formation + Delta-G solvation = 2.626370 kcal Electronic energy + Delta-G solvation = -26812.026945 eV Core-core repulsion = 23012.606875 eV Total energy + Delta-G solvation = -3799.420070 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.00925 -37.77675 -37.28997 -36.60306 -35.35366 -33.93299 -33.18402 -30.23205 -30.09558 -29.84060 -29.41463 -26.54106 -25.55682 -22.05136 -21.96995 -21.33873 -21.09185 -20.88712 -19.28947 -18.14519 -17.66499 -16.99212 -16.33899 -15.95370 -15.22808 -15.18448 -14.90881 -14.65574 -14.19628 -14.05862 -13.61509 -13.53533 -13.41565 -13.33696 -13.07223 -12.65117 -12.54486 -12.28351 -11.91478 -11.69681 -11.62790 -11.47982 -11.43929 -11.42010 -11.25286 -11.05540 -10.93454 -10.68481 -10.01409 -9.93491 -9.82323 -9.61487 -9.40810 -9.25863 -8.48859 -8.11773 -7.78229 -7.00333 -4.61045 0.93331 2.07004 2.11114 2.56708 2.73593 2.94842 2.96732 3.03225 3.23494 3.42172 3.77010 4.18003 4.34509 4.39485 4.48322 4.72558 4.76031 4.85800 5.00735 5.14977 5.26966 5.31373 5.41496 5.46377 5.69834 5.77253 5.96435 6.01424 6.09824 6.25917 6.34952 6.58015 6.68543 6.74631 6.76021 6.95006 7.04801 7.13792 7.17044 7.30234 7.64808 7.73450 7.86643 8.10407 8.32709 8.59419 8.64062 9.94872 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.003160 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.831824 B = 8857.972179 C = 9038.631024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.138 3.862 3 H 0.099 0.901 4 C 0.100 3.900 5 N -0.453 5.453 6 C -0.053 4.053 7 C -0.032 4.032 8 N -0.497 5.497 9 C 0.183 3.817 10 N -1.116 6.116 11 S 2.687 3.313 12 O -0.971 6.971 13 O -0.970 6.970 14 C -0.630 4.630 15 C -0.150 4.150 16 C -0.119 4.119 17 C -0.119 4.119 18 C 0.093 3.907 19 C -0.460 4.460 20 H 0.083 0.917 21 C 0.076 3.924 22 N -0.793 5.793 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.277 1.277 26 H -0.263 1.263 27 C -0.124 4.124 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.200 0.800 36 H 0.412 0.588 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.284 0.716 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -2.170 -12.169 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.030 3.970 3 H 0.117 0.883 4 C -0.024 4.024 5 N -0.136 5.136 6 C -0.186 4.186 7 C -0.179 4.179 8 N -0.215 5.215 9 C -0.100 4.100 10 N -0.873 5.873 11 S 2.782 3.218 12 O -0.961 6.961 13 O -0.960 6.960 14 C -0.722 4.722 15 C -0.172 4.172 16 C -0.139 4.139 17 C -0.138 4.138 18 C 0.090 3.910 19 C -0.489 4.489 20 H 0.101 0.899 21 C -0.142 4.142 22 N -0.418 5.418 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.202 1.202 26 H -0.188 1.188 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.190 0.810 34 H 0.184 0.816 35 H 0.216 0.784 36 H 0.245 0.755 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.685 -2.229 -11.670 12.771 hybrid contribution -2.191 0.029 0.453 2.238 sum 2.494 -2.200 -11.217 11.699 Atomic orbital electron populations 1.22368 0.93241 1.03561 1.04442 1.21129 0.95119 0.97023 0.83742 0.88343 1.22303 0.77028 1.03554 0.99522 1.45491 1.07273 1.20071 1.40726 1.22715 0.92919 0.96847 1.06159 1.22254 0.95490 0.96589 1.03597 1.70270 1.22254 1.12395 1.16608 1.24910 0.84149 0.98244 1.02692 1.55716 1.84242 1.19319 1.28054 1.01774 0.74707 0.73220 0.72063 1.93544 1.82019 1.62542 1.58009 1.93532 1.65184 1.55667 1.81613 1.29713 1.21700 1.07147 1.13617 1.20032 0.98330 0.94673 1.04121 1.20799 0.95169 0.98698 0.99201 1.21637 0.99743 0.94389 0.98069 1.17668 0.90915 0.91338 0.91119 1.19609 0.92767 1.19282 1.17267 0.89920 1.25927 0.98333 0.93224 0.96747 1.69762 1.12232 1.30479 1.29346 0.86298 0.78121 0.80157 0.81863 1.18637 1.20215 1.18792 1.20769 0.97036 0.98565 0.98122 0.91597 0.89425 0.91409 0.87650 0.88083 0.81010 0.81607 0.78386 0.75473 0.87793 0.88421 0.85761 0.90485 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 9.52 37.16 0.35 -1.55 16 2 C 0.14 1.49 3.15 -67.93 -0.21 1.28 16 3 H 0.10 1.20 7.50 -51.93 -0.39 0.81 16 4 C 0.10 0.78 5.71 -4.04 -0.02 0.76 16 5 N -0.45 -4.85 2.70 -118.57 -0.32 -5.17 16 6 C -0.05 -0.59 11.58 -16.56 -0.19 -0.78 16 7 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 8 N -0.50 -7.40 11.25 -14.67 -0.17 -7.56 16 9 C 0.18 2.25 12.29 -90.37 -1.11 1.14 16 10 N -1.12 -14.43 5.13 -4.89 -0.03 -14.46 16 11 S 2.69 49.04 5.72 -107.50 -0.61 48.42 16 12 O -0.97 -20.27 17.27 -57.17 -0.99 -21.26 16 13 O -0.97 -19.81 16.60 -57.17 -0.95 -20.76 16 14 C -0.63 -12.99 5.05 -39.66 -0.20 -13.19 16 15 C -0.15 -3.05 8.61 -39.29 -0.34 -3.39 16 16 C -0.12 -2.52 10.02 -39.66 -0.40 -2.92 16 17 C -0.12 -2.81 8.70 -38.87 -0.34 -3.15 16 18 C 0.09 2.30 5.58 -106.82 -0.60 1.71 16 19 C -0.46 -11.41 9.05 -37.74 -0.34 -11.75 16 20 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 21 C 0.08 1.77 5.14 -17.35 -0.09 1.68 16 22 N -0.79 -18.78 10.95 55.55 0.61 -18.17 16 23 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 27 C -0.12 -2.83 9.26 -38.87 -0.36 -3.19 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 1.27 6.18 -51.94 -0.32 0.95 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 34 H 0.17 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.20 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.41 4.25 8.84 -34.48 -0.30 3.94 16 37 H 0.10 1.92 7.59 -52.49 -0.40 1.52 16 38 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.12 3.02 6.16 -52.48 -0.32 2.70 16 40 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 41 H 0.11 2.46 7.60 -52.49 -0.40 2.06 16 LS Contribution 360.92 15.07 5.44 5.44 Total: -1.00 -32.80 360.92 -11.17 -43.97 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.07 Total: 11.04 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: -4.06 Total: -33.98 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.10 Total: -45.36 kcal Atomic # 8 Polarization: -40.08 SS G_CDS: -1.94 Total: -42.02 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 49.04 SS G_CDS: -0.61 Total: 48.42 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.80 -11.17 -43.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.592 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds