Wall clock time and date at job start Tue Mar 31 2020 19:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46772 * 2 1 4 4 C 1.52998 * 109.47114 * 239.99835 * 2 1 3 5 5 N 1.46504 * 109.46884 * 175.00059 * 4 2 1 6 6 C 1.36881 * 126.39711 * 269.71593 * 5 4 2 7 7 C 1.34673 * 106.81875 * 179.84579 * 6 5 4 8 8 N 1.34133 * 108.01831 * 0.41656 * 7 6 5 9 9 C 1.30502 * 109.25553 * 359.73706 * 8 7 6 10 10 N 1.46502 * 109.47035 * 119.99840 * 2 1 3 11 11 S 1.65599 * 119.99996 * 265.00165 * 10 2 1 12 12 O 1.42100 * 106.40152 * 178.53774 * 11 10 2 13 13 O 1.42099 * 106.40104 * 311.46024 * 11 10 2 14 14 C 1.76203 * 107.21852 * 64.99822 * 11 10 2 15 15 C 1.38654 * 119.87739 * 269.72785 * 14 11 10 16 16 C 1.38618 * 120.49880 * 179.71981 * 15 14 11 17 17 C 1.37634 * 120.24737 * 0.55300 * 16 15 14 18 18 C 1.40698 * 119.74651 * 359.72582 * 17 16 15 19 19 C 1.41401 * 120.24091 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99631 * 204.37935 * 19 18 17 21 21 C 1.39938 * 120.00123 * 24.37355 * 19 18 17 22 22 N 1.30821 * 120.00141 * 17.87188 * 21 19 18 23 23 Si 1.86807 * 119.99819 * 197.86695 * 21 19 18 24 24 H 1.48498 * 109.47068 * 60.00427 * 23 21 19 25 25 H 1.48505 * 109.46911 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47121 * 300.00412 * 23 21 19 27 27 C 1.37597 * 119.87280 * 89.99731 * 14 11 10 28 28 H 1.09002 * 109.46772 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47228 * 300.00271 * 1 2 3 30 30 H 1.09006 * 109.46519 * 60.00292 * 1 2 3 31 31 H 1.09000 * 109.47208 * 55.00376 * 4 2 1 32 32 H 1.09001 * 109.47407 * 295.00164 * 4 2 1 33 33 H 1.08003 * 126.59042 * 359.97438 * 6 5 4 34 34 H 1.07993 * 125.99221 * 180.11830 * 7 6 5 35 35 H 1.07994 * 125.65001 * 180.02562 * 9 8 7 36 36 H 0.97003 * 119.99508 * 85.00092 * 10 2 1 37 37 H 1.07994 * 119.74846 * 359.97438 * 15 14 11 38 38 H 1.08004 * 119.86888 * 180.25432 * 16 15 14 39 39 H 1.08009 * 120.12467 * 179.74208 * 17 16 15 40 40 H 0.97004 * 119.99814 * 179.97438 * 22 21 19 41 41 H 1.07999 * 120.13111 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.6179 -1.3109 6 6 4.2191 0.3711 -1.9262 7 6 5.5207 0.0809 -1.7386 8 7 5.5945 -1.0593 -1.0360 9 6 4.3881 -1.4836 -0.7762 10 7 2.0184 -0.6906 1.1962 11 16 2.4122 0.1772 2.5505 12 8 2.8123 -0.7697 3.5316 13 8 3.2436 1.2443 2.1156 14 6 0.9274 0.9148 3.1474 15 6 0.5558 2.1751 2.7045 16 6 -0.6125 2.7651 3.1612 17 6 -1.4114 2.1088 4.0696 18 6 -1.0413 0.8319 4.5303 19 6 -1.8546 0.1480 5.4632 20 1 -1.4233 -0.6061 6.1048 21 6 -3.2182 0.4484 5.5552 22 7 -3.8158 1.0818 4.5788 23 14 -4.1853 -0.0551 7.0720 24 1 -3.5943 0.5894 8.2723 25 1 -5.5987 0.3759 6.9236 26 1 -4.1319 -1.5311 7.2258 27 6 0.1440 0.2403 4.0554 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.6055 -0.2618 -2.1370 32 1 1.7517 -1.7715 -1.2056 33 1 3.8193 1.2219 -2.4580 34 1 6.3583 0.6615 -2.0959 35 1 4.1407 -2.3785 -0.2246 36 1 2.1110 -1.6562 1.1949 37 1 1.1792 2.6993 1.9954 38 1 -0.8943 3.7454 2.8063 39 1 -2.3192 2.5721 4.4273 40 1 -4.7612 1.2896 4.6425 41 1 0.4373 -0.7396 4.4020 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619476705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:25 Heat of formation + Delta-G solvation = -18.394981 kcal Electronic energy + Delta-G solvation = -26812.938499 eV Core-core repulsion = 23012.606875 eV Total energy + Delta-G solvation = -3800.331624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.85283 -39.48239 -38.47843 -37.95276 -36.94624 -35.67886 -34.10356 -31.92431 -31.61720 -31.08833 -30.27115 -27.40051 -27.24351 -23.67357 -22.99337 -22.75268 -22.22614 -21.74204 -20.70217 -19.72547 -18.78101 -18.16933 -17.74928 -17.36396 -16.80306 -16.60094 -16.22621 -15.92232 -15.28768 -15.08478 -15.02071 -14.94339 -14.47210 -14.30812 -14.24641 -14.04730 -13.71350 -13.41746 -13.26922 -13.21893 -13.11440 -13.05668 -13.00705 -12.82687 -12.62651 -12.52321 -12.26992 -12.13027 -11.57230 -11.38669 -11.13565 -10.88656 -10.79478 -10.31637 -9.83636 -9.55414 -9.35317 -8.73888 -6.45302 -0.53432 0.39900 0.84845 1.22781 1.37216 1.45587 1.49194 1.97584 2.10655 2.16799 2.31851 2.55204 2.77386 3.40945 3.52234 3.64352 3.85136 3.94316 4.02189 4.19636 4.31172 4.31293 4.43335 4.45853 4.63765 4.68187 4.84451 4.86809 4.89736 4.92320 5.05321 5.14295 5.20225 5.40261 5.42808 5.46732 5.56250 5.88835 5.91454 5.93714 6.06907 6.10775 6.37039 6.52375 6.79542 6.84441 7.22863 8.23436 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.003160 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.831824 B = 8857.972179 C = 9038.631024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.135 3.865 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.451 5.451 6 C -0.047 4.047 7 C -0.066 4.066 8 N -0.542 5.542 9 C 0.169 3.831 10 N -1.101 6.101 11 S 2.713 3.287 12 O -1.000 7.000 13 O -0.988 6.988 14 C -0.631 4.631 15 C -0.143 4.143 16 C -0.119 4.119 17 C -0.139 4.139 18 C 0.066 3.934 19 C -0.500 4.500 20 H 0.076 0.924 21 C 0.042 3.958 22 N -0.817 5.817 23 Si 0.978 3.022 24 H -0.264 1.264 25 H -0.264 1.264 26 H -0.260 1.260 27 C -0.143 4.143 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.096 0.904 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.204 0.796 34 H 0.176 0.824 35 H 0.221 0.779 36 H 0.427 0.573 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.292 0.708 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -2.230 -13.989 14.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.027 3.973 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.133 5.133 6 C -0.180 4.180 7 C -0.213 4.213 8 N -0.262 5.262 9 C -0.114 4.114 10 N -0.863 5.863 11 S 2.806 3.194 12 O -0.990 6.990 13 O -0.978 6.978 14 C -0.721 4.721 15 C -0.163 4.163 16 C -0.138 4.138 17 C -0.159 4.159 18 C 0.063 3.937 19 C -0.529 4.529 20 H 0.094 0.906 21 C -0.174 4.174 22 N -0.443 5.443 23 Si 0.799 3.201 24 H -0.188 1.188 25 H -0.188 1.188 26 H -0.184 1.184 27 C -0.165 4.165 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.159 0.841 32 H 0.147 0.853 33 H 0.221 0.779 34 H 0.193 0.807 35 H 0.237 0.763 36 H 0.264 0.736 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.897 -2.279 -13.489 14.224 hybrid contribution -1.871 0.083 0.866 2.063 sum 2.027 -2.197 -12.623 12.972 Atomic orbital electron populations 1.22319 0.92933 1.04207 1.03850 1.21348 0.95275 0.96796 0.83861 0.89433 1.22534 0.75275 1.05301 0.98882 1.45657 1.08245 1.19445 1.39952 1.23226 0.92441 0.97217 1.05158 1.22643 0.97119 0.96875 1.04644 1.70206 1.24124 1.13751 1.18075 1.25374 0.84049 0.99145 1.02829 1.55300 1.83940 1.20024 1.27038 1.00897 0.73512 0.72650 0.72342 1.93499 1.82308 1.63028 1.60173 1.93508 1.65340 1.56941 1.82042 1.30108 1.22040 1.07333 1.12572 1.20355 0.98009 0.94395 1.03581 1.21106 0.94907 0.99679 0.98143 1.21627 1.00137 0.94574 0.99573 1.17982 0.91843 0.92074 0.91775 1.19827 0.94082 1.20484 1.18490 0.90564 1.26651 0.98599 0.92977 0.99223 1.69789 1.12890 1.30952 1.30634 0.85296 0.77089 0.79777 0.77906 1.18843 1.18839 1.18433 1.20800 0.97452 0.98880 0.99325 0.90417 0.93415 0.88548 0.84118 0.85337 0.77898 0.80696 0.76297 0.73620 0.85451 0.85621 0.86978 0.89703 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 9.52 71.98 0.69 -2.55 16 2 C 0.13 2.48 3.15 44.99 0.14 2.62 16 3 H 0.09 1.87 7.50 -2.39 -0.02 1.85 16 4 C 0.10 1.15 5.71 86.38 0.49 1.64 16 5 N -0.45 -8.24 2.70 -529.06 -1.43 -9.66 16 6 C -0.05 -0.91 11.58 83.09 0.96 0.05 16 7 C -0.07 -1.64 11.87 83.52 0.99 -0.65 16 8 N -0.54 -15.77 11.25 -200.31 -2.25 -18.02 16 9 C 0.17 3.85 12.29 180.26 2.22 6.06 16 10 N -1.10 -26.22 5.13 -169.38 -0.87 -27.09 16 11 S 2.71 96.89 5.72 -56.49 -0.32 96.57 16 12 O -1.00 -41.72 17.27 -128.00 -2.21 -43.93 16 13 O -0.99 -39.14 16.60 -128.00 -2.12 -41.26 16 14 C -0.63 -25.98 5.05 22.22 0.11 -25.87 16 15 C -0.14 -5.66 8.61 22.46 0.19 -5.46 16 16 C -0.12 -4.98 10.02 22.22 0.22 -4.76 16 17 C -0.14 -6.76 8.70 22.73 0.20 -6.56 16 18 C 0.07 3.40 5.58 -21.29 -0.12 3.28 16 19 C -0.50 -25.73 9.05 23.46 0.21 -25.52 16 20 H 0.08 3.85 7.91 -2.91 -0.02 3.82 16 21 C 0.04 1.97 5.14 85.26 0.44 2.41 16 22 N -0.82 -39.29 10.95 21.82 0.24 -39.05 16 23 Si 0.98 36.14 29.60 68.60 2.03 38.17 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 26 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 27 C -0.14 -6.76 9.26 22.73 0.21 -6.55 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.31 6.18 -2.39 -0.01 1.30 16 30 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.20 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.22 3.62 8.06 -2.91 -0.02 3.59 16 36 H 0.43 7.80 8.84 -96.74 -0.85 6.94 16 37 H 0.13 4.42 7.59 -2.91 -0.02 4.40 16 38 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 39 H 0.11 5.62 6.16 -2.91 -0.02 5.60 16 40 H 0.29 12.64 8.30 -92.71 -0.77 11.87 16 41 H 0.11 4.95 7.60 -2.91 -0.02 4.93 16 Total: -1.00 -73.81 360.92 0.23 -73.58 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.21 Total: 32.56 kcal Atomic # 6 Polarization: -68.81 SS G_CDS: 6.96 Total: -61.85 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -4.31 Total: -93.83 kcal Atomic # 8 Polarization: -80.86 SS G_CDS: -4.33 Total: -85.19 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Atomic # 16 Polarization: 96.89 SS G_CDS: -0.32 Total: 96.57 kcal Total: -73.81 0.23 -73.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.184 kcal (2) G-P(sol) polarization free energy of solvation -73.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds