Wall clock time and date at job start Tue Mar 31 2020 19:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47030 * 2 1 4 4 C 1.52998 * 109.47015 * 119.99162 * 2 1 3 5 5 N 1.46503 * 109.47388 * 185.00075 * 4 2 1 6 6 C 1.36881 * 126.39476 * 269.72010 * 5 4 2 7 7 C 1.34672 * 106.81143 * 179.84211 * 6 5 4 8 8 N 1.34120 * 108.02284 * 0.41673 * 7 6 5 9 9 C 1.30497 * 109.25699 * 359.73604 * 8 7 6 10 10 N 1.46499 * 109.47216 * 239.99563 * 2 1 3 11 11 S 1.65594 * 120.00075 * 95.00223 * 10 2 1 12 12 O 1.42104 * 106.40307 * 311.45869 * 11 10 2 13 13 O 1.42101 * 106.40315 * 178.53865 * 11 10 2 14 14 C 1.76203 * 107.21996 * 64.99599 * 11 10 2 15 15 C 1.38650 * 119.87973 * 269.97930 * 14 11 10 16 16 C 1.38608 * 120.50414 * 180.02562 * 15 14 11 17 17 C 1.37643 * 120.24878 * 359.97438 * 16 15 14 18 18 C 1.40700 * 119.74098 * 0.02562 * 17 16 15 19 19 C 1.41394 * 120.23952 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00088 * 204.36645 * 19 18 17 21 21 C 1.39953 * 120.00180 * 24.37415 * 19 18 17 22 22 N 1.30819 * 119.99927 * 17.87234 * 21 19 18 23 23 Si 1.86796 * 119.99735 * 197.87752 * 21 19 18 24 24 H 1.48499 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46769 * 119.99669 * 23 21 19 26 26 H 1.48502 * 109.47146 * 239.99550 * 23 21 19 27 27 C 1.37598 * 119.87359 * 89.99777 * 14 11 10 28 28 H 1.09001 * 109.47396 * 300.00491 * 1 2 3 29 29 H 1.09008 * 109.47299 * 60.00455 * 1 2 3 30 30 H 1.08998 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47263 * 305.00504 * 4 2 1 32 32 H 1.09006 * 109.46925 * 65.00161 * 4 2 1 33 33 H 1.07997 * 126.59074 * 359.97438 * 6 5 4 34 34 H 1.08001 * 125.98579 * 180.12104 * 7 6 5 35 35 H 1.08000 * 125.65220 * 180.02562 * 9 8 7 36 36 H 0.96994 * 119.99881 * 274.99646 * 10 2 1 37 37 H 1.08000 * 119.74738 * 359.97438 * 15 14 11 38 38 H 1.08000 * 119.87887 * 179.97438 * 16 15 14 39 39 H 1.08002 * 120.12817 * 180.02562 * 17 16 15 40 40 H 0.97001 * 120.00170 * 180.02562 * 22 21 19 41 41 H 1.07997 * 120.12811 * 0.26214 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.6177 1.3111 6 6 4.4000 -1.4979 0.7736 7 6 5.6274 -1.0225 1.0583 8 7 5.4809 0.1119 1.7586 9 6 4.2093 0.3606 1.9140 10 7 2.0183 -0.6907 -1.1961 11 16 2.4122 0.1769 -2.5504 12 8 1.3247 1.0591 -2.7923 13 8 2.8777 -0.7638 -3.5084 14 6 3.7928 1.1909 -2.1371 15 6 3.5870 2.4652 -1.6311 16 6 4.6635 3.2740 -1.3022 17 6 5.9510 2.8187 -1.4746 18 6 6.1718 1.5272 -1.9873 19 6 7.4900 1.0486 -2.1682 20 1 7.6878 0.2716 -2.8916 21 6 8.5383 1.5819 -1.4097 22 7 8.2798 2.2484 -0.3141 23 14 10.3066 1.3420 -1.9618 24 1 10.3294 0.5581 -3.2228 25 1 10.9378 2.6666 -2.1903 26 1 11.0583 0.6100 -0.9108 27 6 5.0711 0.7151 -2.3181 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2058 33 1 4.1699 -2.3990 0.2246 34 1 6.5654 -1.4777 0.7765 35 1 3.7930 1.2086 2.4375 36 1 2.1110 -1.6562 -1.1947 37 1 2.5801 2.8308 -1.4930 38 1 4.4915 4.2651 -0.9092 39 1 6.7884 3.4504 -1.2173 40 1 9.0063 2.6183 0.2115 41 1 5.2293 -0.2761 -2.7167 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:29 Heat of formation + Delta-G solvation = 9.076175 kcal Electronic energy + Delta-G solvation = -28021.972870 eV Core-core repulsion = 24222.832485 eV Total energy + Delta-G solvation = -3799.140385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49832 -37.55271 -37.22011 -36.54445 -35.33444 -33.73579 -32.81162 -30.15639 -29.97493 -29.70679 -28.83897 -26.34313 -25.38918 -22.01639 -21.78035 -20.90458 -20.83355 -20.47173 -19.19608 -17.94638 -17.42185 -16.87957 -16.21241 -15.84033 -15.12578 -14.82000 -14.74976 -14.53079 -14.07280 -13.56206 -13.40286 -13.33026 -13.21614 -13.12553 -12.68029 -12.57455 -12.50069 -12.11995 -11.83844 -11.60349 -11.55932 -11.54453 -11.35179 -11.30516 -11.14942 -10.91607 -10.82340 -10.53625 -9.90542 -9.63480 -9.30199 -9.28571 -9.24047 -9.00962 -7.96575 -7.91650 -7.58225 -6.78416 -4.40442 0.99531 2.27525 2.54131 2.73258 3.07578 3.10695 3.12077 3.14292 3.48797 3.87915 3.91998 4.21650 4.50158 4.52380 4.65529 4.92175 4.95947 5.08930 5.23451 5.25480 5.33547 5.43677 5.53396 5.64560 5.97016 6.02236 6.09733 6.12160 6.20808 6.25974 6.71703 6.72074 6.85814 6.90080 7.08535 7.15749 7.30922 7.31908 7.47035 7.67056 7.81878 7.90947 8.05126 8.51191 8.71663 8.78981 8.83582 10.15066 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.005342 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.502481 B = 5239.770471 C = 6169.528291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 H 0.096 0.904 4 C 0.103 3.897 5 N -0.458 5.458 6 C -0.062 4.062 7 C -0.005 4.005 8 N -0.465 5.465 9 C 0.177 3.823 10 N -1.114 6.114 11 S 2.685 3.315 12 O -0.976 6.976 13 O -0.974 6.974 14 C -0.626 4.626 15 C -0.157 4.157 16 C -0.118 4.118 17 C -0.114 4.114 18 C 0.102 3.898 19 C -0.457 4.457 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.773 5.773 23 Si 0.904 3.096 24 H -0.260 1.260 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.116 4.116 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.160 0.840 35 H 0.193 0.807 36 H 0.411 0.589 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.281 0.719 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 -5.270 6.029 13.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.030 3.970 3 H 0.114 0.886 4 C -0.022 4.022 5 N -0.143 5.143 6 C -0.194 4.194 7 C -0.153 4.153 8 N -0.182 5.182 9 C -0.105 4.105 10 N -0.871 5.871 11 S 2.781 3.219 12 O -0.966 6.966 13 O -0.965 6.965 14 C -0.719 4.719 15 C -0.178 4.178 16 C -0.137 4.137 17 C -0.134 4.134 18 C 0.099 3.901 19 C -0.486 4.486 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.397 5.397 23 Si 0.729 3.271 24 H -0.184 1.184 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.111 0.889 33 H 0.180 0.820 34 H 0.177 0.823 35 H 0.210 0.790 36 H 0.244 0.756 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.619 -4.561 5.719 12.895 hybrid contribution 0.822 -0.618 -0.056 1.030 sum -9.797 -5.179 5.662 12.444 Atomic orbital electron populations 1.22284 0.94024 1.02836 1.03737 1.21123 0.94557 0.97126 0.84235 0.88573 1.22141 0.78375 1.02828 0.98862 1.45348 1.06137 1.20459 1.42329 1.22450 0.90049 0.99199 1.07679 1.22129 0.96776 0.94497 1.01893 1.70327 1.15627 1.14699 1.17571 1.24837 0.87603 0.95538 1.02492 1.55690 1.82558 1.18864 1.29958 1.01767 0.74431 0.73407 0.72250 1.93509 1.53253 1.66203 1.83619 1.93535 1.82437 1.62705 1.57793 1.29531 1.13834 1.09583 1.18953 1.19932 0.97398 0.93922 1.06577 1.20720 0.93615 0.98022 1.01374 1.21560 0.95276 0.95802 1.00725 1.17570 0.92403 0.90718 0.89441 1.19568 0.91259 1.18848 1.18961 0.90298 1.25864 1.01520 0.93461 0.93345 1.69819 1.34839 1.25672 1.09341 0.86319 0.81776 0.79071 0.79965 1.18410 1.19779 1.19897 1.20639 0.90673 0.98447 1.03975 0.91331 0.90310 0.91971 0.88044 0.88861 0.81984 0.82256 0.79025 0.75575 0.88251 0.88866 0.86052 0.90787 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 9.52 37.16 0.35 -1.14 16 2 C 0.14 1.52 3.01 -67.93 -0.20 1.31 16 3 H 0.10 1.24 7.23 -51.93 -0.38 0.87 16 4 C 0.10 0.93 5.71 -4.04 -0.02 0.90 16 5 N -0.46 -6.08 2.69 -118.57 -0.32 -6.40 16 6 C -0.06 -0.93 11.34 -16.56 -0.19 -1.11 16 7 C 0.00 -0.09 11.87 -17.81 -0.21 -0.30 16 8 N -0.47 -9.28 11.25 -14.67 -0.17 -9.45 16 9 C 0.18 2.83 12.56 -90.38 -1.14 1.70 16 10 N -1.11 -14.56 5.17 -4.89 -0.03 -14.58 16 11 S 2.68 49.03 5.65 -107.50 -0.61 48.42 16 12 O -0.98 -19.21 16.53 -57.17 -0.94 -20.16 16 13 O -0.97 -20.31 17.26 -57.17 -0.99 -21.29 16 14 C -0.63 -13.45 5.81 -39.66 -0.23 -13.68 16 15 C -0.16 -3.36 8.91 -39.29 -0.35 -3.71 16 16 C -0.12 -2.66 10.02 -39.66 -0.40 -3.05 16 17 C -0.11 -2.86 8.70 -38.87 -0.34 -3.19 16 18 C 0.10 2.63 5.58 -106.83 -0.60 2.04 16 19 C -0.46 -11.78 9.05 -37.74 -0.34 -12.13 16 20 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 21 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 22 N -0.77 -19.38 10.95 55.55 0.61 -18.77 16 23 Si 0.90 18.45 29.59 -169.99 -5.03 13.41 16 24 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 C -0.12 -2.77 9.26 -38.88 -0.36 -3.13 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.87 7.64 -51.92 -0.40 0.48 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.16 2.92 8.06 -52.49 -0.42 2.50 16 35 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.41 4.40 8.84 -34.46 -0.30 4.09 16 37 H 0.10 1.92 7.60 -52.49 -0.40 1.53 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 41 H 0.11 2.47 7.60 -52.49 -0.40 2.07 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -33.27 362.94 -11.24 -44.51 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.13 Total: 12.53 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -4.11 Total: -33.69 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.10 Total: -49.20 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.93 Total: -41.45 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: 49.03 SS G_CDS: -0.61 Total: 48.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.27 -11.24 -44.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.588 kcal (2) G-P(sol) polarization free energy of solvation -33.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds