Wall clock time and date at job start Tue Mar 31 2020 19:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46873 * 2 1 4 4 N 1.46505 * 109.47122 * 240.00453 * 2 1 3 5 5 S 1.65603 * 119.99811 * 94.99641 * 4 2 1 6 6 O 1.42106 * 106.39874 * 178.54167 * 5 4 2 7 7 O 1.42101 * 106.40190 * 311.46004 * 5 4 2 8 8 C 1.76195 * 107.21653 * 65.00095 * 5 4 2 9 9 C 1.38655 * 119.87624 * 269.72506 * 8 5 4 10 10 C 1.38615 * 120.50127 * 179.72754 * 9 8 5 11 11 C 1.37645 * 120.24610 * 0.54646 * 10 9 8 12 12 C 1.40693 * 119.74370 * 359.73132 * 11 10 9 13 13 C 1.41399 * 120.24477 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00681 * 204.37635 * 13 12 11 15 15 C 1.39950 * 119.99520 * 24.38086 * 13 12 11 16 16 N 1.30822 * 120.00226 * 17.86918 * 15 13 12 17 17 Si 1.86805 * 119.99672 * 197.86980 * 15 13 12 18 18 H 1.48492 * 109.47212 * 59.99565 * 17 15 13 19 19 H 1.48499 * 109.46950 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46628 * 299.99577 * 17 15 13 21 21 C 1.37596 * 119.87331 * 90.00180 * 8 5 4 22 22 C 1.50699 * 109.47277 * 120.00213 * 2 1 3 23 23 C 1.39871 * 126.03975 * 80.15635 * 22 2 1 24 24 N 1.30838 * 108.20358 * 180.23245 * 23 22 2 25 25 N 1.40080 * 108.20556 * 359.77868 * 24 23 22 26 26 C 1.46493 * 126.03918 * 180.02562 * 25 24 23 27 27 C 1.34953 * 107.92539 * 359.97438 * 25 24 23 28 28 H 1.08997 * 109.47345 * 59.99696 * 1 2 3 29 29 H 1.09001 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46723 * 299.99235 * 1 2 3 31 31 H 0.96999 * 119.99952 * 275.00399 * 4 2 1 32 32 H 1.07999 * 119.74871 * 0.02562 * 9 8 5 33 33 H 1.07994 * 119.87708 * 180.25768 * 10 9 8 34 34 H 1.07995 * 120.12413 * 179.75025 * 11 10 9 35 35 H 0.96999 * 119.99831 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.12985 * 359.97175 * 21 8 5 37 37 H 1.08001 * 125.89830 * 0.02562 * 23 22 2 38 38 H 1.08994 * 109.47768 * 269.97557 * 26 25 24 39 39 H 1.09000 * 109.47343 * 29.97685 * 26 25 24 40 40 H 1.09003 * 109.47211 * 149.97514 * 26 25 24 41 41 H 1.07994 * 126.12956 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 16 2.4121 0.1774 -2.5505 6 8 2.8776 -0.7632 -3.5086 7 8 1.3245 1.0595 -2.7921 8 6 3.7926 1.1912 -2.1371 9 6 3.5868 2.4674 -1.6358 10 6 4.6633 3.2739 -1.3010 11 6 5.9508 2.8188 -1.4740 12 6 6.1717 1.5276 -1.9873 13 6 7.4898 1.0492 -2.1688 14 1 7.6876 0.2726 -2.8927 15 6 8.5382 1.5821 -1.4101 16 7 8.2798 2.2480 -0.3141 17 14 10.3065 1.3424 -1.9626 18 1 10.4918 1.9478 -3.3058 19 1 11.2210 1.9976 -0.9933 20 1 10.6124 -0.1094 -2.0274 21 6 5.0710 0.7155 -2.3184 22 6 2.0324 -0.7104 1.2304 23 6 2.1244 -2.0957 1.4009 24 7 2.5995 -2.3295 2.5973 25 7 2.8300 -1.0986 3.2250 26 6 3.3609 -0.9065 4.5768 27 6 2.4775 -0.1210 2.3642 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 2.1110 -1.6561 -1.1951 32 1 2.5800 2.8341 -1.5006 33 1 4.4913 4.2648 -0.9074 34 1 6.7881 3.4503 -1.2163 35 1 9.0065 2.6176 0.2114 36 1 5.2291 -0.2774 -2.7129 37 1 1.8477 -2.8432 0.6722 38 1 2.5370 -0.8720 5.2894 39 1 4.0239 -1.7346 4.8278 40 1 3.9173 0.0299 4.6189 41 1 2.5353 0.9415 2.5489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619486620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:01 Heat of formation + Delta-G solvation = 18.735720 kcal Electronic energy + Delta-G solvation = -26684.219320 eV Core-core repulsion = 22885.497804 eV Total energy + Delta-G solvation = -3798.721516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20672 -37.63906 -36.75718 -36.12798 -35.24504 -33.85190 -32.96295 -30.60129 -30.07783 -29.78479 -28.83273 -26.63846 -25.49610 -22.98063 -21.89089 -21.19857 -20.99340 -20.08683 -18.96048 -17.89440 -17.37596 -16.75678 -15.91764 -15.56248 -15.40894 -15.15758 -14.75854 -14.45546 -14.31238 -13.94080 -13.50314 -13.39784 -13.28550 -12.86975 -12.69804 -12.59307 -12.57127 -12.10752 -11.90819 -11.56964 -11.54006 -11.47543 -11.36888 -11.35429 -11.15858 -11.00041 -10.86951 -10.64372 -10.43577 -9.82550 -9.68767 -9.40002 -9.34857 -9.17292 -8.37043 -8.02972 -7.70391 -6.93857 -4.53800 1.07657 1.91229 2.21186 2.52578 2.63909 2.80295 2.98293 3.00975 3.08003 3.65477 3.82064 4.27007 4.43760 4.47384 4.85800 4.98818 5.02371 5.03074 5.20313 5.28924 5.30239 5.41067 5.46722 5.63267 5.72737 5.88557 6.01174 6.05342 6.17365 6.34190 6.43851 6.64017 6.66077 6.76185 6.85964 6.99207 7.02640 7.21338 7.29845 7.39222 7.70014 7.72471 7.80969 7.94480 8.40115 8.66558 8.71824 10.01567 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.004563 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.538689 B = 6134.855836 C = 7854.592438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.234 3.766 3 H 0.092 0.908 4 N -1.112 6.112 5 S 2.688 3.312 6 O -0.974 6.974 7 O -0.973 6.973 8 C -0.630 4.630 9 C -0.152 4.152 10 C -0.120 4.120 11 C -0.120 4.120 12 C 0.092 3.908 13 C -0.461 4.461 14 H 0.082 0.918 15 C 0.076 3.924 16 N -0.795 5.795 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.121 4.121 22 C -0.237 4.237 23 C 0.060 3.940 24 N -0.300 5.300 25 N -0.376 5.376 26 C 0.103 3.897 27 C 0.070 3.930 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.412 0.588 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.283 0.717 36 H 0.111 0.889 37 H 0.180 0.820 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.131 -2.546 8.677 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.126 3.874 3 H 0.110 0.890 4 N -0.869 5.869 5 S 2.784 3.216 6 O -0.965 6.965 7 O -0.963 6.963 8 C -0.722 4.722 9 C -0.173 4.173 10 C -0.140 4.140 11 C -0.140 4.140 12 C 0.089 3.911 13 C -0.490 4.490 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.420 5.420 17 Si 0.735 3.265 18 H -0.186 1.186 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.142 4.142 22 C -0.250 4.250 23 C -0.127 4.127 24 N -0.121 5.121 25 N -0.158 5.158 26 C -0.039 4.039 27 C -0.077 4.077 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.245 0.755 32 H 0.124 0.876 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.197 0.803 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.078 -3.174 9.078 13.225 hybrid contribution 1.423 0.484 -0.095 1.506 sum -7.655 -2.690 8.983 12.105 Atomic orbital electron populations 1.22303 0.94697 1.02504 1.02744 1.18808 0.93285 0.94840 0.80476 0.89016 1.55666 1.82396 1.19010 1.29820 1.01693 0.74263 0.73343 0.72295 1.93536 1.82428 1.62576 1.57943 1.93514 1.52839 1.66289 1.83677 1.29759 1.14253 1.09781 1.18388 1.20078 0.97782 0.93758 1.05650 1.20794 0.93533 0.98242 1.01414 1.21616 0.95491 0.95780 1.01089 1.17674 0.92554 0.90961 0.89937 1.19599 0.91275 1.19040 1.19068 0.89970 1.25920 1.01981 0.93022 0.93267 1.69773 1.35288 1.26875 1.10113 0.86312 0.80642 0.79810 0.79737 1.18629 1.20262 1.18827 1.20780 0.90757 0.98794 1.03902 1.20098 1.13766 0.93639 0.97520 1.23604 0.98744 0.95816 0.94500 1.77323 1.22365 1.03499 1.08886 1.48409 1.50144 1.03897 1.13375 1.21842 0.99505 1.03897 0.78645 1.22321 0.99073 0.95587 0.90684 0.90907 0.92281 0.91856 0.75466 0.87555 0.88474 0.85841 0.90612 0.87122 0.80287 0.90936 0.89377 0.89318 0.80693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.50 37.16 0.35 -1.52 16 2 C 0.23 3.11 3.21 -69.08 -0.22 2.89 16 3 H 0.09 1.26 7.24 -51.93 -0.38 0.89 16 4 N -1.11 -16.14 5.46 -5.88 -0.03 -16.17 16 5 S 2.69 49.71 5.65 -107.50 -0.61 49.10 16 6 O -0.97 -20.45 17.27 -57.17 -0.99 -21.44 16 7 O -0.97 -19.07 16.52 -57.17 -0.94 -20.01 16 8 C -0.63 -13.55 5.81 -39.66 -0.23 -13.78 16 9 C -0.15 -3.18 8.92 -39.29 -0.35 -3.53 16 10 C -0.12 -2.63 10.02 -39.66 -0.40 -3.02 16 11 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 12 C 0.09 2.37 5.58 -106.82 -0.60 1.78 16 13 C -0.46 -11.84 9.06 -37.74 -0.34 -12.18 16 14 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 15 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 16 N -0.80 -19.48 10.95 55.55 0.61 -18.87 16 17 Si 0.91 18.07 29.60 -169.99 -5.03 13.04 16 18 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 19 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 21 C -0.12 -2.91 9.26 -38.87 -0.36 -3.27 16 22 C -0.24 -3.12 5.09 -105.05 -0.54 -3.66 16 23 C 0.06 0.79 11.28 -17.36 -0.20 0.59 16 24 N -0.30 -4.31 12.58 30.63 0.39 -3.92 16 25 N -0.38 -4.71 4.01 -68.17 -0.27 -4.98 16 26 C 0.10 0.84 11.47 59.84 0.69 1.53 16 27 C 0.07 0.87 11.40 -17.22 -0.20 0.67 16 28 H 0.07 0.91 7.64 -51.93 -0.40 0.51 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.41 5.11 7.88 -34.48 -0.27 4.84 16 32 H 0.11 1.97 7.59 -52.49 -0.40 1.57 16 33 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.12 3.09 6.15 -52.49 -0.32 2.76 16 35 H 0.28 6.30 8.30 -40.82 -0.34 5.97 16 36 H 0.11 2.58 7.60 -52.48 -0.40 2.18 16 37 H 0.18 1.87 7.68 -52.49 -0.40 1.47 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -32.65 362.58 -9.31 -41.96 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.08 Total: 10.86 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: -2.81 Total: -35.02 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.69 Total: -43.95 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.93 Total: -41.45 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 49.71 SS G_CDS: -0.61 Total: 49.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.65 -9.31 -41.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.696 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds