Wall clock time and date at job start Tue Mar 31 2020 19:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46873 * 2 1 4 4 N 1.46505 * 109.47122 * 240.00453 * 2 1 3 5 5 S 1.65603 * 119.99811 * 94.99641 * 4 2 1 6 6 O 1.42106 * 106.39874 * 178.54167 * 5 4 2 7 7 O 1.42101 * 106.40190 * 311.46004 * 5 4 2 8 8 C 1.76195 * 107.21653 * 65.00095 * 5 4 2 9 9 C 1.38655 * 119.87624 * 269.72506 * 8 5 4 10 10 C 1.38615 * 120.50127 * 179.72754 * 9 8 5 11 11 C 1.37645 * 120.24610 * 0.54646 * 10 9 8 12 12 C 1.40693 * 119.74370 * 359.73132 * 11 10 9 13 13 C 1.41399 * 120.24477 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00681 * 204.37635 * 13 12 11 15 15 C 1.39950 * 119.99520 * 24.38086 * 13 12 11 16 16 N 1.30822 * 120.00226 * 17.86918 * 15 13 12 17 17 Si 1.86805 * 119.99672 * 197.86980 * 15 13 12 18 18 H 1.48492 * 109.47212 * 59.99565 * 17 15 13 19 19 H 1.48499 * 109.46950 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46628 * 299.99577 * 17 15 13 21 21 C 1.37596 * 119.87331 * 90.00180 * 8 5 4 22 22 C 1.50699 * 109.47277 * 120.00213 * 2 1 3 23 23 C 1.39871 * 126.03975 * 80.15635 * 22 2 1 24 24 N 1.30838 * 108.20358 * 180.23245 * 23 22 2 25 25 N 1.40080 * 108.20556 * 359.77868 * 24 23 22 26 26 C 1.46493 * 126.03918 * 180.02562 * 25 24 23 27 27 C 1.34953 * 107.92539 * 359.97438 * 25 24 23 28 28 H 1.08997 * 109.47345 * 59.99696 * 1 2 3 29 29 H 1.09001 * 109.46873 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46723 * 299.99235 * 1 2 3 31 31 H 0.96999 * 119.99952 * 275.00399 * 4 2 1 32 32 H 1.07999 * 119.74871 * 0.02562 * 9 8 5 33 33 H 1.07994 * 119.87708 * 180.25768 * 10 9 8 34 34 H 1.07995 * 120.12413 * 179.75025 * 11 10 9 35 35 H 0.96999 * 119.99831 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.12985 * 359.97175 * 21 8 5 37 37 H 1.08001 * 125.89830 * 0.02562 * 23 22 2 38 38 H 1.08994 * 109.47768 * 269.97557 * 26 25 24 39 39 H 1.09000 * 109.47343 * 29.97685 * 26 25 24 40 40 H 1.09003 * 109.47211 * 149.97514 * 26 25 24 41 41 H 1.07994 * 126.12956 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 16 2.4121 0.1774 -2.5505 6 8 2.8776 -0.7632 -3.5086 7 8 1.3245 1.0595 -2.7921 8 6 3.7926 1.1912 -2.1371 9 6 3.5868 2.4674 -1.6358 10 6 4.6633 3.2739 -1.3010 11 6 5.9508 2.8188 -1.4740 12 6 6.1717 1.5276 -1.9873 13 6 7.4898 1.0492 -2.1688 14 1 7.6876 0.2726 -2.8927 15 6 8.5382 1.5821 -1.4101 16 7 8.2798 2.2480 -0.3141 17 14 10.3065 1.3424 -1.9626 18 1 10.4918 1.9478 -3.3058 19 1 11.2210 1.9976 -0.9933 20 1 10.6124 -0.1094 -2.0274 21 6 5.0710 0.7155 -2.3184 22 6 2.0324 -0.7104 1.2304 23 6 2.1244 -2.0957 1.4009 24 7 2.5995 -2.3295 2.5973 25 7 2.8300 -1.0986 3.2250 26 6 3.3609 -0.9065 4.5768 27 6 2.4775 -0.1210 2.3642 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 2.1110 -1.6561 -1.1951 32 1 2.5800 2.8341 -1.5006 33 1 4.4913 4.2648 -0.9074 34 1 6.7881 3.4503 -1.2163 35 1 9.0065 2.6176 0.2114 36 1 5.2291 -0.2774 -2.7129 37 1 1.8477 -2.8432 0.6722 38 1 2.5370 -0.8720 5.2894 39 1 4.0239 -1.7346 4.8278 40 1 3.9173 0.0299 4.6189 41 1 2.5353 0.9415 2.5489 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619486620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:00 Heat of formation + Delta-G solvation = -3.330037 kcal Electronic energy + Delta-G solvation = -26685.176163 eV Core-core repulsion = 22885.497804 eV Total energy + Delta-G solvation = -3799.678359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.15016 -39.41996 -38.26628 -37.29959 -36.83078 -35.65631 -33.83939 -31.89260 -31.67230 -31.55399 -29.78207 -27.44606 -27.33478 -23.99860 -23.61594 -22.77720 -22.15426 -21.09426 -20.47415 -19.51272 -18.61283 -17.99183 -17.69348 -16.92327 -16.66281 -16.49607 -16.30795 -15.80525 -15.26706 -15.18383 -15.05923 -14.93905 -14.32855 -14.27348 -13.71960 -13.67486 -13.63291 -13.39617 -13.28743 -13.13724 -13.10367 -13.04338 -12.99678 -12.79650 -12.59534 -12.44912 -12.27523 -12.21609 -11.56418 -11.43827 -11.32787 -11.13253 -10.51090 -10.33723 -9.81336 -9.53326 -9.32127 -8.73194 -6.44196 -0.42749 0.44611 0.87108 0.97124 1.35864 1.44835 1.48593 1.71050 1.79756 2.16784 2.25717 2.57724 2.83955 3.50384 3.55572 3.63927 4.00908 4.09276 4.29242 4.32813 4.35205 4.45185 4.48767 4.50907 4.61417 4.69851 4.85198 4.87324 4.92877 4.94880 5.07752 5.12479 5.21673 5.39946 5.44103 5.47841 5.59897 5.69616 5.91317 5.95766 6.12914 6.13830 6.18167 6.54298 6.74409 6.80686 6.86743 8.24448 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009742 B = 0.004563 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.538689 B = 6134.855836 C = 7854.592438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.231 3.769 3 H 0.088 0.912 4 N -1.099 6.099 5 S 2.718 3.282 6 O -1.000 7.000 7 O -0.978 6.978 8 C -0.637 4.637 9 C -0.144 4.144 10 C -0.120 4.120 11 C -0.141 4.141 12 C 0.063 3.937 13 C -0.502 4.502 14 H 0.074 0.926 15 C 0.041 3.959 16 N -0.820 5.820 17 Si 0.979 3.021 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.262 1.262 21 C -0.146 4.146 22 C -0.252 4.252 23 C 0.051 3.949 24 N -0.333 5.333 25 N -0.380 5.380 26 C 0.093 3.907 27 C 0.067 3.933 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.423 0.577 32 H 0.137 0.863 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.291 0.709 36 H 0.104 0.896 37 H 0.198 0.802 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.057 -1.966 9.772 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.123 3.877 3 H 0.106 0.894 4 N -0.860 5.860 5 S 2.811 3.189 6 O -0.990 6.990 7 O -0.968 6.968 8 C -0.725 4.725 9 C -0.165 4.165 10 C -0.139 4.139 11 C -0.160 4.160 12 C 0.060 3.940 13 C -0.531 4.531 14 H 0.093 0.907 15 C -0.175 4.175 16 N -0.446 5.446 17 Si 0.799 3.201 18 H -0.186 1.186 19 H -0.187 1.187 20 H -0.187 1.187 21 C -0.167 4.167 22 C -0.265 4.265 23 C -0.134 4.134 24 N -0.155 5.155 25 N -0.162 5.162 26 C -0.047 4.047 27 C -0.081 4.081 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.259 0.741 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.214 0.786 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -9.989 -2.582 10.193 14.503 hybrid contribution 1.553 0.315 -0.343 1.622 sum -8.435 -2.267 9.850 13.165 Atomic orbital electron populations 1.22271 0.93016 1.03389 1.03147 1.18985 0.94531 0.94429 0.79705 0.89365 1.55367 1.81662 1.19456 1.29468 1.00849 0.73053 0.72624 0.72398 1.93498 1.82743 1.63045 1.59760 1.93504 1.52221 1.66869 1.84177 1.30267 1.14585 1.10771 1.16914 1.20509 0.99021 0.93178 1.03776 1.21149 0.92614 0.99704 1.00459 1.21629 0.96504 0.95526 1.02384 1.18014 0.93256 0.91911 0.90834 1.19817 0.92535 1.20395 1.20378 0.90748 1.26665 1.05582 0.92392 0.92866 1.69797 1.36820 1.27283 1.10690 0.85297 0.75652 0.79722 0.79385 1.18551 1.18725 1.18673 1.20820 0.91733 0.98757 1.05404 1.20147 1.14878 0.93715 0.97797 1.23974 0.98357 0.96473 0.94614 1.77266 1.23550 1.04965 1.09695 1.48763 1.49615 1.03374 1.14473 1.22161 1.00498 1.04722 0.77302 1.22799 0.98102 0.96747 0.90487 0.91863 0.91251 0.90011 0.74093 0.84482 0.85286 0.87000 0.89783 0.87814 0.78553 0.88804 0.89501 0.87599 0.78262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.50 71.98 0.68 -2.54 16 2 C 0.23 5.64 3.21 44.24 0.14 5.78 16 3 H 0.09 2.22 7.24 -2.39 -0.02 2.20 16 4 N -1.10 -30.22 5.46 -172.51 -0.94 -31.16 16 5 S 2.72 97.50 5.65 -56.49 -0.32 97.18 16 6 O -1.00 -41.70 17.27 -128.00 -2.21 -43.91 16 7 O -0.98 -36.32 16.52 -128.00 -2.11 -38.43 16 8 C -0.64 -27.07 5.81 22.22 0.13 -26.94 16 9 C -0.14 -5.79 8.92 22.46 0.20 -5.59 16 10 C -0.12 -5.10 10.02 22.22 0.22 -4.88 16 11 C -0.14 -7.00 8.70 22.73 0.20 -6.80 16 12 C 0.06 3.34 5.58 -21.29 -0.12 3.23 16 13 C -0.50 -26.83 9.06 23.46 0.21 -26.62 16 14 H 0.07 3.90 7.91 -2.91 -0.02 3.88 16 15 C 0.04 1.99 5.14 85.26 0.44 2.43 16 16 N -0.82 -40.75 10.95 21.83 0.24 -40.51 16 17 Si 0.98 37.35 29.60 68.60 2.03 39.38 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 C -0.15 -7.20 9.26 22.73 0.21 -6.99 16 22 C -0.25 -6.19 5.09 -20.14 -0.10 -6.29 16 23 C 0.05 1.30 11.28 85.24 0.96 2.26 16 24 N -0.33 -9.27 12.58 -57.02 -0.72 -9.99 16 25 N -0.38 -8.94 4.01 -369.59 -1.48 -10.42 16 26 C 0.09 1.37 11.47 127.77 1.47 2.83 16 27 C 0.07 1.51 11.40 83.54 0.95 2.47 16 28 H 0.06 1.42 7.64 -2.39 -0.02 1.40 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.42 9.92 7.88 -96.74 -0.76 9.16 16 32 H 0.14 4.64 7.59 -2.91 -0.02 4.61 16 33 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 34 H 0.11 5.73 6.15 -2.91 -0.02 5.72 16 35 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 36 H 0.10 5.08 7.60 -2.91 -0.02 5.06 16 37 H 0.20 3.86 7.68 -2.91 -0.02 3.83 16 38 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.20 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -70.95 362.58 0.38 -70.56 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.30 Total: 34.96 kcal Atomic # 6 Polarization: -73.26 SS G_CDS: 5.60 Total: -67.67 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -2.90 Total: -92.09 kcal Atomic # 8 Polarization: -78.01 SS G_CDS: -4.32 Total: -82.34 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Atomic # 16 Polarization: 97.50 SS G_CDS: -0.32 Total: 97.18 kcal Total: -70.95 0.38 -70.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619486620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.235 kcal (2) G-P(sol) polarization free energy of solvation -70.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds