Wall clock time and date at job start Tue Mar 31 2020 18:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.38240 * 119.99973 * 89.99692 * 4 3 2 6 6 C 1.38234 * 119.99729 * 179.97438 * 5 4 3 7 7 C 1.38238 * 120.00440 * 0.02998 * 6 5 4 8 8 S 1.76199 * 120.00175 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.40321 * 336.45507 * 8 7 6 10 10 O 1.42108 * 106.39883 * 203.53516 * 8 7 6 11 11 N 1.65597 * 107.22117 * 89.99665 * 8 7 6 12 12 C 1.40575 * 119.99859 * 64.72085 * 11 8 7 13 13 C 1.40653 * 126.07797 * 314.96480 * 12 11 8 14 14 N 1.30928 * 108.40515 * 179.87538 * 13 12 11 15 15 N 1.40079 * 108.40013 * 0.38832 * 14 13 12 16 16 C 1.37305 * 126.07833 * 179.71484 * 15 14 13 17 17 H 1.08001 * 119.99701 * 180.02562 * 16 15 14 18 18 C 1.38977 * 120.00260 * 0.04781 * 16 15 14 19 19 N 1.31302 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47487 * 89.99344 * 20 18 16 22 22 H 1.48505 * 109.47204 * 209.99584 * 20 18 16 23 23 H 1.48507 * 109.46681 * 329.99342 * 20 18 16 24 24 C 1.35634 * 126.07407 * 135.27748 * 12 11 8 25 25 C 1.38235 * 119.99428 * 0.24609 * 7 6 5 26 26 C 1.38234 * 119.99906 * 269.97414 * 4 3 2 27 27 H 1.08994 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47171 * 300.00372 * 1 2 3 29 29 H 1.09002 * 109.46837 * 59.99961 * 1 2 3 30 30 H 1.09003 * 109.47331 * 240.00019 * 2 1 3 31 31 H 1.08995 * 109.47280 * 119.99531 * 2 1 3 32 32 H 1.08997 * 109.47390 * 59.99762 * 3 2 1 33 33 H 1.09002 * 109.46809 * 299.99527 * 3 2 1 34 34 H 1.07993 * 120.00191 * 359.97438 * 5 4 3 35 35 H 1.08007 * 120.00126 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 37 37 H 1.08005 * 125.79859 * 0.04041 * 13 12 11 38 38 H 0.97000 * 120.00216 * 180.02562 * 19 18 16 39 39 H 1.08000 * 126.25046 * 359.93277 * 24 12 11 40 40 H 1.08004 * 119.99790 * 179.73496 * 25 7 6 41 41 H 1.07996 * 120.00062 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2377 1.4426 -1.1981 6 6 5.6200 1.4432 -1.1986 7 6 6.3117 1.4430 -0.0018 8 16 8.0737 1.4430 -0.0025 9 8 8.4745 0.8986 -1.2524 10 8 8.4755 0.8984 1.2471 11 7 8.5640 3.0247 -0.0026 12 6 8.2760 3.8498 1.0985 13 6 7.0418 3.9376 1.7674 14 7 7.1592 4.8071 2.7391 15 7 8.4650 5.3137 2.7238 16 6 8.9779 6.2534 3.5836 17 1 10.0038 6.5754 3.4820 18 6 8.1771 6.7899 4.5848 19 7 6.9299 6.3985 4.7082 20 14 8.8747 8.0688 5.7540 21 1 8.6530 9.4258 5.1930 22 1 8.1947 7.9599 7.0697 23 1 10.3312 7.8374 5.9289 24 6 9.1372 4.7072 1.7009 25 6 5.6210 1.4371 1.1956 26 6 4.2386 1.4429 1.1962 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.6973 1.4423 -2.1332 35 1 6.1597 1.4428 -2.1342 36 1 9.0463 3.3830 -0.7641 37 1 6.1496 3.3802 1.5228 38 1 6.3708 6.7732 5.4067 39 1 10.1666 4.8787 1.4230 40 1 6.1614 1.4326 2.1307 41 1 3.6990 1.4427 2.1317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747406725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:48 Heat of formation + Delta-G solvation = 22.335442 kcal Electronic energy + Delta-G solvation = -26244.279246 eV Core-core repulsion = 22445.713826 eV Total energy + Delta-G solvation = -3798.565420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.68898 -39.37750 -36.84830 -35.51023 -35.34524 -34.54424 -33.05101 -31.41037 -31.07578 -30.25602 -27.44321 -26.82919 -24.86938 -22.87287 -22.64281 -21.10166 -20.81386 -20.05807 -19.08873 -18.02488 -17.41221 -16.85184 -16.02823 -15.68323 -15.57058 -15.36791 -14.79760 -14.45392 -14.31245 -13.97926 -13.84568 -13.50211 -13.39430 -13.32746 -12.96251 -12.47203 -12.29445 -12.10122 -11.87444 -11.73778 -11.69345 -11.57054 -11.47775 -11.45224 -11.24802 -11.21748 -10.95273 -10.83906 -10.60776 -10.55031 -10.10786 -9.39492 -9.05277 -8.94791 -8.82798 -8.22145 -7.04246 -6.63233 -4.33691 0.68381 0.97530 1.37599 2.91844 3.02531 3.07408 3.27910 3.46383 3.61776 3.80210 3.98714 4.17720 4.51214 4.58075 4.64782 4.72394 4.83776 4.95002 4.95941 4.99621 5.19153 5.29429 5.37269 5.50904 5.58495 5.59361 5.71941 5.84314 5.87796 5.99298 6.02239 6.04742 6.18814 6.23048 6.28943 6.34293 6.49163 6.74686 6.90486 7.06951 7.23262 7.53985 7.77330 8.09560 8.58570 9.26758 9.49975 10.32854 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.003571 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.989417 B = 7838.416214 C = 9772.838512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.089 4.089 4 C -0.030 4.030 5 C -0.145 4.145 6 C -0.017 4.017 7 C -0.674 4.674 8 S 2.698 3.302 9 O -0.975 6.975 10 O -0.951 6.951 11 N -1.019 6.019 12 C -0.049 4.049 13 C -0.072 4.072 14 N -0.245 5.245 15 N -0.141 5.141 16 C -0.322 4.322 17 H 0.119 0.881 18 C 0.047 3.953 19 N -0.771 5.771 20 Si 0.936 3.064 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.057 4.057 25 C -0.007 4.007 26 C -0.139 4.139 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.410 0.590 37 H 0.159 0.841 38 H 0.275 0.725 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 -7.541 -8.900 14.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.126 4.126 4 C -0.030 4.030 5 C -0.164 4.164 6 C -0.036 4.036 7 C -0.761 4.761 8 S 2.788 3.212 9 O -0.965 6.965 10 O -0.941 6.941 11 N -0.772 5.772 12 C -0.157 4.157 13 C -0.248 4.248 14 N -0.076 5.076 15 N 0.092 4.908 16 C -0.454 4.454 17 H 0.136 0.864 18 C -0.170 4.170 19 N -0.398 5.398 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.187 1.187 24 C -0.209 4.209 25 C -0.026 4.026 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.245 0.755 37 H 0.176 0.824 38 H 0.086 0.914 39 H 0.168 0.832 40 H 0.164 0.836 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.426 -7.745 -7.644 13.763 hybrid contribution 0.197 0.726 -0.561 0.938 sum -8.229 -7.019 -8.206 13.576 Atomic orbital electron populations 1.21783 0.95527 1.01721 1.01951 1.21506 0.95794 0.95756 1.02618 1.20775 0.90510 0.97746 1.03556 1.20188 0.95843 0.93617 0.93356 1.21074 0.94082 1.03509 0.97739 1.20854 0.94610 0.91677 0.96442 1.30953 1.27388 1.18363 0.99400 1.01726 0.73822 0.72355 0.73268 1.93542 1.81825 1.76748 1.44415 1.93581 1.80209 1.76330 1.43963 1.52122 1.71223 1.28364 1.25529 1.16687 0.94536 1.06978 0.97501 1.23964 0.96441 1.04244 1.00171 1.78200 0.96580 1.12989 1.19852 1.44591 1.06572 1.22887 1.16788 1.19931 0.98478 1.17160 1.09848 0.86362 1.25640 0.95191 0.98226 0.97967 1.70194 1.05342 1.35775 1.28459 0.85806 0.79521 0.79769 0.78964 1.19584 1.20056 1.18718 1.21646 0.98244 1.04626 0.96407 1.21045 0.94782 0.89634 0.97143 1.21185 0.94118 1.02475 0.98033 0.92650 0.92555 0.92687 0.91764 0.91607 0.90342 0.90603 0.85456 0.84492 0.75480 0.82441 0.91412 0.83226 0.83583 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.15 0.37 -0.69 16 2 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 3 C -0.09 -0.82 5.34 -27.88 -0.15 -0.97 16 4 C -0.03 -0.36 5.13 -104.62 -0.54 -0.90 16 5 C -0.15 -1.75 9.70 -39.58 -0.38 -2.13 16 6 C -0.02 -0.23 9.52 -39.58 -0.38 -0.60 16 7 C -0.67 -10.74 5.21 -39.58 -0.21 -10.95 16 8 S 2.70 47.17 5.62 -107.50 -0.60 46.57 16 9 O -0.98 -17.36 17.28 -57.17 -0.99 -18.35 16 10 O -0.95 -19.86 17.01 -57.17 -0.97 -20.83 16 11 N -1.02 -17.97 5.93 32.32 0.19 -17.78 16 12 C -0.05 -1.08 6.42 -83.87 -0.54 -1.62 16 13 C -0.07 -1.69 10.72 -17.03 -0.18 -1.87 16 14 N -0.25 -6.68 10.40 30.81 0.32 -6.36 16 15 N -0.14 -3.73 3.74 -11.40 -0.04 -3.77 16 16 C -0.32 -8.26 10.25 -14.83 -0.15 -8.41 16 17 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 18 C 0.05 1.17 5.50 -17.50 -0.10 1.08 16 19 N -0.77 -20.63 11.81 55.49 0.66 -19.97 16 20 Si 0.94 18.42 29.55 -169.99 -5.02 13.39 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 24 C -0.06 -1.33 11.50 -16.36 -0.19 -1.52 16 25 C -0.01 -0.11 6.34 -39.58 -0.25 -0.36 16 26 C -0.14 -1.91 9.70 -39.58 -0.38 -2.29 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 34 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.14 1.64 7.62 -52.48 -0.40 1.24 16 36 H 0.41 5.96 8.96 -34.47 -0.31 5.65 16 37 H 0.16 3.30 4.19 -52.48 -0.22 3.08 16 38 H 0.28 6.73 8.31 -40.82 -0.34 6.40 16 39 H 0.15 2.97 8.06 -52.49 -0.42 2.54 16 40 H 0.15 2.49 7.20 -52.48 -0.38 2.11 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 358.98 15.07 5.41 5.41 Total: -1.00 -33.35 358.98 -9.36 -42.71 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.07 Total: 11.34 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -3.23 Total: -32.37 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 1.13 Total: -47.88 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -1.96 Total: -39.19 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.39 kcal Atomic # 16 Polarization: 47.17 SS G_CDS: -0.60 Total: 46.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.35 -9.36 -42.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747406725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.049 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds