Wall clock time and date at job start Tue Mar 31 2020 18:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.38240 * 119.99973 * 89.99692 * 4 3 2 6 6 C 1.38234 * 119.99729 * 179.97438 * 5 4 3 7 7 C 1.38238 * 120.00440 * 0.02998 * 6 5 4 8 8 S 1.76199 * 120.00175 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.40321 * 336.45507 * 8 7 6 10 10 O 1.42108 * 106.39883 * 203.53516 * 8 7 6 11 11 N 1.65597 * 107.22117 * 89.99665 * 8 7 6 12 12 C 1.40575 * 119.99859 * 64.72085 * 11 8 7 13 13 C 1.40653 * 126.07797 * 314.96480 * 12 11 8 14 14 N 1.30928 * 108.40515 * 179.87538 * 13 12 11 15 15 N 1.40079 * 108.40013 * 0.38832 * 14 13 12 16 16 C 1.37305 * 126.07833 * 179.71484 * 15 14 13 17 17 H 1.08001 * 119.99701 * 180.02562 * 16 15 14 18 18 C 1.38977 * 120.00260 * 0.04781 * 16 15 14 19 19 N 1.31302 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47487 * 89.99344 * 20 18 16 22 22 H 1.48505 * 109.47204 * 209.99584 * 20 18 16 23 23 H 1.48507 * 109.46681 * 329.99342 * 20 18 16 24 24 C 1.35634 * 126.07407 * 135.27748 * 12 11 8 25 25 C 1.38235 * 119.99428 * 0.24609 * 7 6 5 26 26 C 1.38234 * 119.99906 * 269.97414 * 4 3 2 27 27 H 1.08994 * 109.47027 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47171 * 300.00372 * 1 2 3 29 29 H 1.09002 * 109.46837 * 59.99961 * 1 2 3 30 30 H 1.09003 * 109.47331 * 240.00019 * 2 1 3 31 31 H 1.08995 * 109.47280 * 119.99531 * 2 1 3 32 32 H 1.08997 * 109.47390 * 59.99762 * 3 2 1 33 33 H 1.09002 * 109.46809 * 299.99527 * 3 2 1 34 34 H 1.07993 * 120.00191 * 359.97438 * 5 4 3 35 35 H 1.08007 * 120.00126 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00224 * 245.00409 * 11 8 7 37 37 H 1.08005 * 125.79859 * 0.04041 * 13 12 11 38 38 H 0.97000 * 120.00216 * 180.02562 * 19 18 16 39 39 H 1.08000 * 126.25046 * 359.93277 * 24 12 11 40 40 H 1.08004 * 119.99790 * 179.73496 * 25 7 6 41 41 H 1.07996 * 120.00062 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2377 1.4426 -1.1981 6 6 5.6200 1.4432 -1.1986 7 6 6.3117 1.4430 -0.0018 8 16 8.0737 1.4430 -0.0025 9 8 8.4745 0.8986 -1.2524 10 8 8.4755 0.8984 1.2471 11 7 8.5640 3.0247 -0.0026 12 6 8.2760 3.8498 1.0985 13 6 7.0418 3.9376 1.7674 14 7 7.1592 4.8071 2.7391 15 7 8.4650 5.3137 2.7238 16 6 8.9779 6.2534 3.5836 17 1 10.0038 6.5754 3.4820 18 6 8.1771 6.7899 4.5848 19 7 6.9299 6.3985 4.7082 20 14 8.8747 8.0688 5.7540 21 1 8.6530 9.4258 5.1930 22 1 8.1947 7.9599 7.0697 23 1 10.3312 7.8374 5.9289 24 6 9.1372 4.7072 1.7009 25 6 5.6210 1.4371 1.1956 26 6 4.2386 1.4429 1.1962 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.6973 1.4423 -2.1332 35 1 6.1597 1.4428 -2.1342 36 1 9.0463 3.3830 -0.7641 37 1 6.1496 3.3802 1.5228 38 1 6.3708 6.7732 5.4067 39 1 10.1666 4.8787 1.4230 40 1 6.1614 1.4326 2.1307 41 1 3.6990 1.4427 2.1317 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747406725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:47 Heat of formation + Delta-G solvation = 0.405902 kcal Electronic energy + Delta-G solvation = -26245.230182 eV Core-core repulsion = 22445.713826 eV Total energy + Delta-G solvation = -3799.516356 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47471 -40.48431 -38.33574 -36.99608 -36.30206 -36.08608 -34.82175 -32.47237 -32.19045 -31.95169 -29.25421 -27.65507 -26.71684 -23.98795 -23.52615 -22.61990 -21.91539 -21.77858 -20.60207 -19.56096 -18.89688 -18.35495 -17.52734 -17.23616 -16.78423 -16.58942 -16.04109 -15.62678 -15.49584 -15.30135 -15.26981 -15.07196 -14.58255 -14.45214 -14.14622 -13.72207 -13.55546 -13.41784 -13.30916 -13.22951 -13.14225 -12.95622 -12.86261 -12.75034 -12.47330 -12.18391 -12.13045 -12.08254 -11.91245 -11.52863 -11.51726 -11.18547 -10.74119 -10.15470 -10.10540 -9.97525 -8.84761 -8.47426 -6.26992 -0.65774 -0.21197 0.29335 1.29056 1.41552 1.58095 1.73899 1.90479 2.14330 2.19795 2.46400 2.77864 2.84066 3.08591 3.33233 3.68433 3.75706 3.91973 4.13815 4.19552 4.26563 4.34574 4.39650 4.49897 4.55293 4.66053 4.71080 4.72141 4.89673 4.92686 4.97417 5.00233 5.08291 5.14211 5.22774 5.24151 5.27103 5.43157 5.45822 5.52790 5.86387 5.90806 6.08829 6.33744 6.74478 7.41662 7.60843 8.51621 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011857 B = 0.003571 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.989417 B = 7838.416214 C = 9772.838512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.087 4.087 4 C -0.023 4.023 5 C -0.139 4.139 6 C -0.022 4.022 7 C -0.686 4.686 8 S 2.713 3.287 9 O -0.977 6.977 10 O -0.991 6.991 11 N -1.012 6.012 12 C -0.037 4.037 13 C -0.078 4.078 14 N -0.293 5.293 15 N -0.167 5.167 16 C -0.355 4.355 17 H 0.137 0.863 18 C -0.002 4.002 19 N -0.819 5.819 20 Si 1.016 2.984 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.249 1.249 24 C -0.066 4.066 25 C -0.032 4.032 26 C -0.148 4.148 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.426 0.574 37 H 0.178 0.822 38 H 0.278 0.722 39 H 0.180 0.820 40 H 0.124 0.876 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.861 -7.298 -10.484 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.124 4.124 4 C -0.024 4.024 5 C -0.158 4.158 6 C -0.042 4.042 7 C -0.776 4.776 8 S 2.806 3.194 9 O -0.967 6.967 10 O -0.981 6.981 11 N -0.766 5.766 12 C -0.146 4.146 13 C -0.255 4.255 14 N -0.124 5.124 15 N 0.065 4.935 16 C -0.486 4.486 17 H 0.155 0.845 18 C -0.214 4.214 19 N -0.447 5.447 20 Si 0.835 3.165 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.173 1.173 24 C -0.218 4.218 25 C -0.052 4.052 26 C -0.166 4.166 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.264 0.736 37 H 0.194 0.806 38 H 0.087 0.913 39 H 0.197 0.803 40 H 0.142 0.858 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.165 -7.506 -9.258 15.035 hybrid contribution 0.348 0.506 -0.230 0.655 sum -8.817 -7.000 -9.488 14.723 Atomic orbital electron populations 1.21767 0.94428 1.02230 1.02362 1.21488 0.96703 0.94862 1.02416 1.20857 0.88226 0.98681 1.04618 1.20577 0.97537 0.91562 0.92700 1.21516 0.93488 1.01575 0.99203 1.21193 0.95694 0.91122 0.96168 1.30573 1.25752 1.20785 1.00462 1.01031 0.74358 0.71749 0.72274 1.93530 1.82507 1.76615 1.44057 1.93533 1.81656 1.77130 1.45798 1.52003 1.71648 1.27957 1.25028 1.16709 0.93620 1.06394 0.97828 1.24385 0.97900 1.03589 0.99587 1.78100 0.97966 1.14644 1.21650 1.44859 1.06697 1.23948 1.18042 1.20587 0.99690 1.17735 1.10584 0.84516 1.26776 0.95256 1.00048 0.99320 1.70346 1.07046 1.37680 1.29618 0.84631 0.79216 0.76606 0.76024 1.18806 1.20058 1.17253 1.22318 0.99634 1.04230 0.95629 1.20964 0.95924 0.91823 0.96444 1.21405 0.93305 1.02308 0.99615 0.92150 0.92589 0.91853 0.91401 0.92464 0.90140 0.88759 0.81800 0.82598 0.73645 0.80590 0.91258 0.80254 0.85841 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 71.98 0.71 -0.99 16 2 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 3 C -0.09 -1.35 5.34 29.85 0.16 -1.19 16 4 C -0.02 -0.51 5.13 -19.86 -0.10 -0.62 16 5 C -0.14 -2.92 9.70 22.27 0.22 -2.70 16 6 C -0.02 -0.57 9.52 22.27 0.21 -0.36 16 7 C -0.69 -21.59 5.21 22.27 0.12 -21.47 16 8 S 2.71 94.64 5.62 -56.49 -0.32 94.32 16 9 O -0.98 -33.78 17.28 -128.00 -2.21 -35.99 16 10 O -0.99 -42.55 17.01 -128.00 -2.18 -44.73 16 11 N -1.01 -35.18 5.93 -51.65 -0.31 -35.49 16 12 C -0.04 -1.65 6.42 37.72 0.24 -1.40 16 13 C -0.08 -3.77 10.72 85.42 0.92 -2.85 16 14 N -0.29 -16.47 10.40 -56.45 -0.59 -17.06 16 15 N -0.17 -9.04 3.74 -189.99 -0.71 -9.75 16 16 C -0.35 -18.49 10.25 84.01 0.86 -17.63 16 17 H 0.14 6.28 7.83 -2.91 -0.02 6.26 16 18 C 0.00 -0.09 5.50 84.95 0.47 0.38 16 19 N -0.82 -45.25 11.81 21.66 0.26 -44.99 16 20 Si 1.02 37.84 29.55 68.60 2.03 39.87 16 21 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.28 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 24 C -0.07 -3.10 11.50 83.35 0.96 -2.14 16 25 C -0.03 -1.05 6.34 22.27 0.14 -0.91 16 26 C -0.15 -3.98 9.70 22.27 0.22 -3.76 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.09 1.17 8.08 -2.39 -0.02 1.16 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.16 3.29 7.62 -2.91 -0.02 3.27 16 36 H 0.43 11.86 8.96 -96.74 -0.87 11.00 16 37 H 0.18 7.59 4.19 -2.91 -0.01 7.58 16 38 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.18 6.96 8.06 -2.91 -0.02 6.93 16 40 H 0.12 4.51 7.20 -2.91 -0.02 4.49 16 41 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -74.05 358.98 1.47 -72.58 By element: Atomic # 1 Polarization: 38.15 SS G_CDS: 0.20 Total: 38.35 kcal Atomic # 6 Polarization: -62.40 SS G_CDS: 5.30 Total: -57.10 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -1.35 Total: -107.29 kcal Atomic # 8 Polarization: -76.34 SS G_CDS: -4.39 Total: -80.72 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 16 Polarization: 94.64 SS G_CDS: -0.32 Total: 94.32 kcal Total: -74.05 1.47 -72.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747406725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.988 kcal (2) G-P(sol) polarization free energy of solvation -74.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds