Wall clock time and date at job start Tue Mar 31 2020 19:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47174 * 2 1 4 4 C 1.52998 * 109.46916 * 240.00216 * 2 1 3 5 5 C 1.47207 * 109.47006 * 174.99990 * 4 2 1 6 6 N 3.43551 * 154.82574 * 248.43475 * 2 1 3 7 7 N 1.46497 * 109.47295 * 120.00424 * 2 1 3 8 8 C 1.34780 * 119.99904 * 275.00538 * 7 2 1 9 9 O 1.21365 * 120.00146 * 359.97438 * 8 7 2 10 10 C 1.49305 * 120.00269 * 180.02562 * 8 7 2 11 11 O 1.21403 * 119.99752 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00614 * 179.97438 * 10 8 7 13 13 C 1.39802 * 120.00471 * 185.60975 * 12 10 8 14 14 C 1.38803 * 120.08692 * 34.09444 * 13 12 10 15 15 C 1.38143 * 120.01663 * 179.97438 * 14 13 12 16 16 C 1.38583 * 120.18473 * 0.02562 * 15 14 13 17 17 F 1.35107 * 119.91367 * 180.02562 * 16 15 14 18 18 C 1.38338 * 120.17890 * 0.04579 * 16 15 14 19 19 C 1.38740 * 119.97703 * 359.92953 * 18 16 15 20 20 O 1.35754 * 120.09399 * 180.32355 * 19 18 16 21 21 C 1.34794 * 116.99803 * 354.20658 * 20 19 18 22 22 H 1.07999 * 120.00183 * 354.52733 * 21 20 19 23 23 C 1.38653 * 119.99654 * 174.52844 * 21 20 19 24 24 N 1.31552 * 120.00659 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99627 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47322 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47236 * 120.00362 * 25 23 21 28 28 H 1.48507 * 109.47122 * 239.99854 * 25 23 21 29 29 H 1.08999 * 109.46873 * 299.99628 * 1 2 3 30 30 H 1.08994 * 109.47093 * 59.99745 * 1 2 3 31 31 H 1.08996 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47722 * 294.99781 * 4 2 1 33 33 H 1.08996 * 109.47559 * 55.00366 * 4 2 1 34 34 H 0.96995 * 120.00386 * 94.99521 * 7 2 1 35 35 H 0.97006 * 119.99416 * 5.60256 * 12 10 8 36 36 H 1.08002 * 119.98953 * 359.97438 * 14 13 12 37 37 H 1.07992 * 119.90610 * 180.02562 * 15 14 13 38 38 H 1.07994 * 120.01454 * 180.02562 * 18 16 15 39 39 H 0.96995 * 120.00393 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5071 -0.6173 -1.3113 6 7 4.6392 -0.5371 -1.3591 7 7 2.0184 -0.6907 1.1961 8 6 2.1470 -0.0184 2.3571 9 8 1.8587 1.1593 2.4117 10 6 2.6453 -0.7221 3.5761 11 8 2.9341 -1.9000 3.5214 12 7 2.7744 -0.0498 4.7370 13 6 3.3502 -0.6753 5.8468 14 6 4.3708 -1.5999 5.6727 15 6 4.9390 -2.2167 6.7704 16 6 4.4928 -1.9157 8.0475 17 9 5.0528 -2.5219 9.1172 18 6 3.4751 -0.9966 8.2299 19 6 2.8997 -0.3725 7.1325 20 8 1.9054 0.5347 7.3092 21 6 1.4405 0.6964 8.5641 22 1 1.7953 0.0561 9.3581 23 6 0.5068 1.6849 8.8354 24 7 0.0742 2.4646 7.8682 25 14 -0.1369 1.9095 10.5745 26 1 0.5021 0.9134 11.4714 27 1 0.1837 3.2801 11.0479 28 1 -1.6089 1.7134 10.5867 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 2.2490 -1.6318 1.1525 35 1 2.4679 0.8682 4.8024 36 1 4.7206 -1.8370 4.6789 37 1 5.7332 -2.9354 6.6330 38 1 3.1297 -0.7637 9.2263 39 1 -0.5786 3.1563 8.0581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783938754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:48 Heat of formation + Delta-G solvation = -85.796344 kcal Electronic energy + Delta-G solvation = -27769.364555 eV Core-core repulsion = 23399.897013 eV Total energy + Delta-G solvation = -4369.467542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.33370 -40.84574 -39.57845 -38.41805 -37.40766 -36.43614 -35.84178 -34.26075 -32.47682 -31.94871 -29.59355 -28.74187 -28.55155 -25.64928 -25.11083 -22.67494 -21.95339 -21.27008 -20.28118 -18.90429 -18.43261 -18.04464 -17.51412 -17.14729 -16.47570 -16.07206 -15.63235 -15.31890 -15.25436 -15.02302 -14.62554 -14.36516 -14.32522 -14.02961 -13.91202 -13.76852 -13.61325 -13.53479 -13.23308 -12.72503 -12.66364 -12.41657 -12.27135 -12.13011 -12.07256 -11.71701 -11.51184 -11.43430 -11.36386 -11.04776 -10.78630 -10.54183 -9.89194 -9.80844 -9.51435 -9.39553 -9.01781 -8.00311 -7.24652 -6.64297 -4.22899 1.29522 1.91924 2.02857 2.33376 2.42131 2.50035 3.03907 3.05928 3.11729 3.31682 3.53707 3.69782 3.81432 4.23346 4.24929 4.57577 4.61046 4.76441 4.80090 4.91029 4.98794 5.01485 5.10973 5.33254 5.46245 5.57249 5.66126 5.90837 5.90874 6.04413 6.07748 6.38114 6.61739 6.79470 6.81087 6.83444 6.97063 7.11790 7.24269 7.47388 7.59125 7.77866 7.83128 8.19049 8.80039 9.39034 10.51887 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.003269 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.022555 B = 8563.524696 C =10705.351450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 H 0.102 0.898 4 C -0.033 4.033 5 C 0.198 3.802 6 N -0.424 5.424 7 N -0.706 5.706 8 C 0.515 3.485 9 O -0.506 6.506 10 C 0.499 3.501 11 O -0.519 6.519 12 N -0.612 5.612 13 C 0.047 3.953 14 C -0.043 4.043 15 C -0.231 4.231 16 C 0.138 3.862 17 F -0.149 7.149 18 C -0.258 4.258 19 C 0.164 3.836 20 O -0.163 6.163 21 C -0.395 4.395 22 H 0.097 0.903 23 C 0.044 3.956 24 N -0.851 5.851 25 Si 0.944 3.056 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.118 0.882 33 H 0.129 0.871 34 H 0.413 0.587 35 H 0.427 0.573 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -5.546 -14.463 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.120 0.880 4 C -0.074 4.074 5 C -0.121 4.121 6 N -0.100 5.100 7 N -0.361 5.361 8 C 0.296 3.704 9 O -0.380 6.380 10 C 0.281 3.719 11 O -0.396 6.396 12 N -0.257 5.257 13 C -0.047 4.047 14 C -0.063 4.063 15 C -0.251 4.251 16 C 0.118 3.882 17 F -0.128 7.128 18 C -0.279 4.279 19 C 0.107 3.893 20 O -0.065 6.065 21 C -0.470 4.470 22 H 0.114 0.886 23 C -0.162 4.162 24 N -0.484 5.484 25 Si 0.768 3.232 26 H -0.189 1.189 27 H -0.199 1.199 28 H -0.200 1.200 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.147 0.853 34 H 0.250 0.750 35 H 0.265 0.735 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.163 0.837 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.084 -5.011 -14.716 15.584 hybrid contribution -0.730 -0.060 1.187 1.395 sum 0.354 -5.070 -13.530 14.453 Atomic orbital electron populations 1.22201 0.93089 1.03228 1.03861 1.21025 0.95349 0.97875 0.81859 0.88031 1.19687 0.82354 1.04861 1.00458 1.29058 0.95236 0.93932 0.93832 1.81275 1.12930 1.07972 1.07866 1.45813 1.66595 1.14972 1.08758 1.20082 0.78793 0.86982 0.84535 1.90817 1.47398 1.15157 1.84603 1.19965 0.80372 0.86885 0.84710 1.90748 1.49378 1.14705 1.84742 1.42793 1.57170 1.17445 1.08329 1.16786 1.00116 1.04241 0.83519 1.20450 0.92535 0.94470 0.98856 1.20421 1.06532 1.07725 0.90459 1.17475 0.93956 0.93851 0.82930 1.91424 1.84180 1.81915 1.55283 1.20872 1.02219 1.04234 1.00574 1.18786 0.88527 0.91024 0.90957 1.83942 1.41686 1.48874 1.31961 1.21422 1.23644 1.18383 0.83558 0.88612 1.25335 0.96096 0.94658 1.00119 1.70022 1.28363 1.18009 1.32048 0.85600 0.78892 0.78859 0.79876 1.18892 1.19926 1.19953 0.90857 0.90717 0.91548 0.86448 0.85327 0.75047 0.73457 0.84729 0.85722 0.83718 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 9.48 37.16 0.35 -0.60 16 2 C 0.14 0.97 2.55 -67.93 -0.17 0.80 16 3 H 0.10 0.84 7.57 -51.93 -0.39 0.45 16 4 C -0.03 -0.12 5.25 -29.52 -0.16 -0.27 16 5 C 0.20 1.65 15.14 -20.76 -0.31 1.34 16 6 N -0.42 -5.23 18.54 42.15 0.78 -4.44 16 7 N -0.71 -7.00 4.77 -54.29 -0.26 -7.25 16 8 C 0.52 7.43 7.85 -11.65 -0.09 7.34 16 9 O -0.51 -8.48 16.15 5.48 0.09 -8.39 16 10 C 0.50 8.45 7.61 -11.66 -0.09 8.36 16 11 O -0.52 -9.13 14.23 5.45 0.08 -9.06 16 12 N -0.61 -11.63 5.18 -10.17 -0.05 -11.68 16 13 C 0.05 0.97 6.28 -83.52 -0.52 0.45 16 14 C -0.04 -0.79 8.65 -39.41 -0.34 -1.14 16 15 C -0.23 -4.13 10.02 -39.49 -0.40 -4.53 16 16 C 0.14 2.67 7.29 -39.42 -0.29 2.38 16 17 F -0.15 -2.77 17.26 2.25 0.04 -2.73 16 18 C -0.26 -5.51 9.11 -39.36 -0.36 -5.86 16 19 C 0.16 3.73 6.67 -38.90 -0.26 3.47 16 20 O -0.16 -4.24 9.30 0.14 0.00 -4.24 16 21 C -0.39 -10.31 9.44 30.89 0.29 -10.02 16 22 H 0.10 2.34 5.30 -52.49 -0.28 2.06 16 23 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 24 N -0.85 -23.33 13.67 55.48 0.76 -22.57 16 25 Si 0.94 19.52 29.55 -169.99 -5.02 14.49 16 26 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.12 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 34 H 0.41 3.55 8.07 -40.82 -0.33 3.22 16 35 H 0.43 8.35 8.03 -40.82 -0.33 8.02 16 36 H 0.13 2.33 6.48 -52.49 -0.34 1.99 16 37 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.15 3.08 5.71 -52.49 -0.30 2.78 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -32.83 359.04 -4.26 -37.09 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -3.64 Total: 10.62 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -2.44 Total: 2.75 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 1.23 Total: -45.95 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.17 Total: -21.68 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.83 -4.26 -37.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783938754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.708 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds