Wall clock time and date at job start Tue Mar 31 2020 19:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47174 * 2 1 4 4 C 1.52998 * 109.46916 * 240.00216 * 2 1 3 5 5 C 1.47207 * 109.47006 * 174.99990 * 4 2 1 6 6 N 3.43551 * 154.82574 * 248.43475 * 2 1 3 7 7 N 1.46497 * 109.47295 * 120.00424 * 2 1 3 8 8 C 1.34780 * 119.99904 * 275.00538 * 7 2 1 9 9 O 1.21365 * 120.00146 * 359.97438 * 8 7 2 10 10 C 1.49305 * 120.00269 * 180.02562 * 8 7 2 11 11 O 1.21403 * 119.99752 * 359.97438 * 10 8 7 12 12 N 1.34773 * 120.00614 * 179.97438 * 10 8 7 13 13 C 1.39802 * 120.00471 * 185.60975 * 12 10 8 14 14 C 1.38803 * 120.08692 * 34.09444 * 13 12 10 15 15 C 1.38143 * 120.01663 * 179.97438 * 14 13 12 16 16 C 1.38583 * 120.18473 * 0.02562 * 15 14 13 17 17 F 1.35107 * 119.91367 * 180.02562 * 16 15 14 18 18 C 1.38338 * 120.17890 * 0.04579 * 16 15 14 19 19 C 1.38740 * 119.97703 * 359.92953 * 18 16 15 20 20 O 1.35754 * 120.09399 * 180.32355 * 19 18 16 21 21 C 1.34794 * 116.99803 * 354.20658 * 20 19 18 22 22 H 1.07999 * 120.00183 * 354.52733 * 21 20 19 23 23 C 1.38653 * 119.99654 * 174.52844 * 21 20 19 24 24 N 1.31552 * 120.00659 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99627 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47322 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47236 * 120.00362 * 25 23 21 28 28 H 1.48507 * 109.47122 * 239.99854 * 25 23 21 29 29 H 1.08999 * 109.46873 * 299.99628 * 1 2 3 30 30 H 1.08994 * 109.47093 * 59.99745 * 1 2 3 31 31 H 1.08996 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47722 * 294.99781 * 4 2 1 33 33 H 1.08996 * 109.47559 * 55.00366 * 4 2 1 34 34 H 0.96995 * 120.00386 * 94.99521 * 7 2 1 35 35 H 0.97006 * 119.99416 * 5.60256 * 12 10 8 36 36 H 1.08002 * 119.98953 * 359.97438 * 14 13 12 37 37 H 1.07992 * 119.90610 * 180.02562 * 15 14 13 38 38 H 1.07994 * 120.01454 * 180.02562 * 18 16 15 39 39 H 0.96995 * 120.00393 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5071 -0.6173 -1.3113 6 7 4.6392 -0.5371 -1.3591 7 7 2.0184 -0.6907 1.1961 8 6 2.1470 -0.0184 2.3571 9 8 1.8587 1.1593 2.4117 10 6 2.6453 -0.7221 3.5761 11 8 2.9341 -1.9000 3.5214 12 7 2.7744 -0.0498 4.7370 13 6 3.3502 -0.6753 5.8468 14 6 4.3708 -1.5999 5.6727 15 6 4.9390 -2.2167 6.7704 16 6 4.4928 -1.9157 8.0475 17 9 5.0528 -2.5219 9.1172 18 6 3.4751 -0.9966 8.2299 19 6 2.8997 -0.3725 7.1325 20 8 1.9054 0.5347 7.3092 21 6 1.4405 0.6964 8.5641 22 1 1.7953 0.0561 9.3581 23 6 0.5068 1.6849 8.8354 24 7 0.0742 2.4646 7.8682 25 14 -0.1369 1.9095 10.5745 26 1 0.5021 0.9134 11.4714 27 1 0.1837 3.2801 11.0479 28 1 -1.6089 1.7134 10.5867 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 2.2490 -1.6318 1.1525 35 1 2.4679 0.8682 4.8024 36 1 4.7206 -1.8370 4.6789 37 1 5.7332 -2.9354 6.6330 38 1 3.1297 -0.7637 9.2263 39 1 -0.5786 3.1563 8.0581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783938754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:47 Heat of formation + Delta-G solvation = -109.650175 kcal Electronic energy + Delta-G solvation = -27770.398935 eV Core-core repulsion = 23399.897013 eV Total energy + Delta-G solvation = -4370.501922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.87506 -42.17307 -40.99708 -39.82371 -38.24762 -38.08787 -36.72437 -35.69186 -34.35656 -32.76957 -31.22696 -30.27311 -29.06599 -27.49308 -26.37129 -24.14323 -23.34193 -22.31144 -21.49149 -20.21601 -20.17939 -19.33445 -18.59167 -18.37049 -17.65249 -17.44587 -17.05385 -16.78433 -16.65324 -16.52230 -15.98909 -15.56694 -15.52309 -15.32025 -15.26806 -15.13795 -14.75709 -14.65541 -14.40287 -14.06136 -13.87440 -13.45878 -13.36340 -13.25527 -13.11345 -12.91599 -12.67126 -12.59459 -12.51322 -12.34270 -12.12541 -11.89517 -11.70707 -11.32459 -10.88011 -10.75068 -10.39633 -9.64702 -8.89347 -8.53275 -6.20904 -0.13468 0.38762 0.48445 1.21336 1.36461 1.42768 1.53446 1.77394 1.85807 2.02345 2.11810 2.51654 2.59735 3.01819 3.04943 3.09998 3.32518 3.38485 3.77369 3.86956 4.12146 4.20140 4.26428 4.31194 4.47826 4.67469 4.80304 4.81042 4.88158 4.94962 5.04442 5.15778 5.19605 5.27184 5.27917 5.34229 5.46193 5.81998 5.88957 5.98544 6.23624 6.61437 6.64886 6.84901 6.90310 7.57320 8.67260 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.003269 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.022555 B = 8563.524696 C =10705.351450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.138 3.862 3 H 0.085 0.915 4 C -0.023 4.023 5 C 0.225 3.775 6 N -0.502 5.502 7 N -0.685 5.685 8 C 0.517 3.483 9 O -0.537 6.537 10 C 0.500 3.500 11 O -0.523 6.523 12 N -0.624 5.624 13 C 0.047 3.953 14 C -0.043 4.043 15 C -0.202 4.202 16 C 0.133 3.867 17 F -0.142 7.142 18 C -0.263 4.263 19 C 0.137 3.863 20 O -0.203 6.203 21 C -0.417 4.417 22 H 0.103 0.897 23 C -0.010 4.010 24 N -0.904 5.904 25 Si 1.015 2.985 26 H -0.254 1.254 27 H -0.268 1.268 28 H -0.268 1.268 29 H 0.035 0.965 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.175 0.825 34 H 0.422 0.578 35 H 0.421 0.579 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.139 0.861 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -7.645 -15.925 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.103 0.897 4 C -0.062 4.062 5 C -0.092 4.092 6 N -0.180 5.180 7 N -0.340 5.340 8 C 0.297 3.703 9 O -0.413 6.413 10 C 0.282 3.718 11 O -0.400 6.400 12 N -0.269 5.269 13 C -0.047 4.047 14 C -0.063 4.063 15 C -0.222 4.222 16 C 0.113 3.887 17 F -0.120 7.120 18 C -0.284 4.284 19 C 0.083 3.917 20 O -0.107 6.107 21 C -0.492 4.492 22 H 0.120 0.880 23 C -0.210 4.210 24 N -0.540 5.540 25 Si 0.834 3.166 26 H -0.177 1.177 27 H -0.193 1.193 28 H -0.193 1.193 29 H 0.055 0.945 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.172 0.828 33 H 0.192 0.808 34 H 0.260 0.740 35 H 0.258 0.742 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.137 -7.187 -16.232 17.789 hybrid contribution -0.575 0.377 1.454 1.609 sum 0.563 -6.810 -14.778 16.281 Atomic orbital electron populations 1.22172 0.91681 1.04355 1.03608 1.21317 0.96341 0.97330 0.81596 0.89714 1.20056 0.79006 1.07109 1.00038 1.29943 0.96070 0.91581 0.91573 1.81306 1.15561 1.10721 1.10414 1.45915 1.64557 1.15298 1.08228 1.19687 0.79152 0.86580 0.84912 1.90815 1.49266 1.16276 1.84971 1.20481 0.79518 0.86871 0.84895 1.90721 1.49449 1.14866 1.84980 1.42915 1.57812 1.17368 1.08805 1.17115 1.00170 1.04017 0.83414 1.20707 0.91749 0.93792 1.00025 1.20855 1.05713 1.06424 0.89193 1.17473 0.93686 0.93691 0.83840 1.91446 1.83884 1.81617 1.55068 1.20945 1.02795 1.04609 1.00047 1.19186 0.88887 0.91210 0.92403 1.83926 1.43802 1.50949 1.32059 1.21821 1.24398 1.19030 0.84000 0.88006 1.26474 0.96074 0.94072 1.04386 1.70145 1.30005 1.19422 1.34437 0.84578 0.78305 0.79061 0.74637 1.17735 1.19298 1.19310 0.94543 0.87568 0.89713 0.82771 0.80773 0.73992 0.74166 0.82978 0.81892 0.84377 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.48 71.98 0.68 -0.72 16 2 C 0.14 1.52 2.55 44.99 0.11 1.64 16 3 H 0.08 1.30 7.57 -2.39 -0.02 1.28 16 4 C -0.02 -0.06 5.25 28.79 0.15 0.09 16 5 C 0.23 3.26 15.14 89.44 1.35 4.61 16 6 N -0.50 -12.07 18.54 20.01 0.37 -11.70 16 7 N -0.69 -12.49 4.77 -444.01 -2.12 -14.61 16 8 C 0.52 14.93 7.85 87.22 0.68 15.61 16 9 O -0.54 -18.61 16.15 -3.29 -0.05 -18.66 16 10 C 0.50 16.95 7.61 87.22 0.66 17.61 16 11 O -0.52 -17.81 14.23 -3.41 -0.05 -17.85 16 12 N -0.62 -24.47 5.18 -304.42 -1.58 -26.05 16 13 C 0.05 1.95 6.28 38.32 0.24 2.19 16 14 C -0.04 -1.51 8.65 22.38 0.19 -1.31 16 15 C -0.20 -6.64 10.02 22.33 0.22 -6.41 16 16 C 0.13 4.94 7.29 22.38 0.16 5.11 16 17 F -0.14 -4.95 17.26 44.97 0.78 -4.18 16 18 C -0.26 -11.35 9.11 22.41 0.20 -11.15 16 19 C 0.14 6.45 6.67 22.71 0.15 6.60 16 20 O -0.20 -11.16 9.30 -22.42 -0.21 -11.37 16 21 C -0.42 -22.81 9.44 67.92 0.64 -22.17 16 22 H 0.10 5.19 5.30 -2.91 -0.02 5.17 16 23 C -0.01 -0.54 5.49 84.83 0.47 -0.07 16 24 N -0.90 -52.06 13.67 21.61 0.30 -51.76 16 25 Si 1.01 40.97 29.55 68.60 2.03 43.00 16 26 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 27 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 28 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.18 -0.92 8.14 -2.39 -0.02 -0.93 16 34 H 0.42 6.21 8.07 -92.71 -0.75 5.46 16 35 H 0.42 17.58 8.03 -92.70 -0.74 16.84 16 36 H 0.15 4.89 6.48 -2.91 -0.02 4.87 16 37 H 0.16 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.14 6.05 5.71 -2.91 -0.02 6.03 16 39 H 0.28 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -77.55 359.04 5.07 -72.48 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.33 Total: 29.07 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.94 Total: 11.64 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -3.03 Total: -104.13 kcal Atomic # 8 Polarization: -47.58 SS G_CDS: -0.31 Total: -47.89 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.78 Total: -4.18 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -77.55 5.07 -72.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783938754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.167 kcal (2) G-P(sol) polarization free energy of solvation -77.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds