Wall clock time and date at job start Tue Mar 31 2020 18:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34333 * 126.44066 * 2 1 4 4 N 1.34483 * 107.66630 * 179.76316 * 3 2 1 5 5 C 1.30253 * 108.70200 * 0.42882 * 4 3 2 6 6 C 1.50703 * 125.62287 * 179.83910 * 5 4 3 7 7 N 1.46491 * 109.47212 * 89.68734 * 6 5 4 8 8 C 1.34780 * 119.99837 * 180.02562 * 7 6 5 9 9 O 1.21591 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99685 * 180.02562 * 8 7 6 11 11 C 1.40133 * 119.99772 * 185.66335 * 10 8 7 12 12 C 1.38700 * 120.07848 * 33.98479 * 11 10 8 13 13 C 1.38195 * 120.02703 * 179.97438 * 12 11 10 14 14 C 1.38552 * 120.16898 * 359.97438 * 13 12 11 15 15 F 1.35101 * 119.91879 * 179.97438 * 14 13 12 16 16 C 1.38340 * 120.15258 * 0.04584 * 14 13 12 17 17 C 1.38740 * 119.97980 * 359.93253 * 16 14 13 18 18 O 1.35779 * 120.08987 * 180.31743 * 17 16 14 19 19 C 1.34806 * 116.99745 * 354.12874 * 18 17 16 20 20 H 1.08002 * 120.00294 * 354.47638 * 19 18 17 21 21 C 1.38641 * 120.00056 * 174.47707 * 19 18 17 22 22 N 1.31570 * 119.99721 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47530 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.46907 * 119.99987 * 23 21 19 26 26 H 1.48500 * 109.47249 * 240.00107 * 23 21 19 27 27 O 1.33966 * 108.75962 * 359.56860 * 5 4 3 28 28 H 1.09000 * 109.46935 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47204 * 300.00012 * 1 2 3 30 30 H 1.09001 * 109.47098 * 59.99822 * 1 2 3 31 31 H 1.08002 * 126.16869 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.46791 * 329.68471 * 6 5 4 33 33 H 1.09000 * 109.47267 * 209.69250 * 6 5 4 34 34 H 0.96999 * 120.00692 * 0.02562 * 7 6 5 35 35 H 0.96997 * 120.00511 * 5.65454 * 10 8 7 36 36 H 1.08002 * 119.98601 * 359.97438 * 12 11 10 37 37 H 1.07994 * 119.91360 * 180.02562 * 13 12 11 38 38 H 1.08001 * 120.01120 * 179.97438 * 16 14 13 39 39 H 0.97001 * 119.99950 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6479 0.0053 5 6 3.5766 -0.6547 -0.0007 6 6 4.8005 -1.5339 -0.0012 7 7 5.1974 -1.8191 1.3797 8 6 6.2740 -2.5919 1.6255 9 8 6.9154 -3.0527 0.7010 10 7 6.6389 -2.8547 2.8961 11 6 7.8235 -3.5576 3.1537 12 6 8.9242 -3.3917 2.3264 13 6 10.0921 -4.0850 2.5817 14 6 10.1678 -4.9468 3.6639 15 9 11.3118 -5.6225 3.9086 16 6 9.0741 -5.1181 4.4936 17 6 7.8987 -4.4249 4.2433 18 8 6.8260 -4.5864 5.0599 19 6 6.9260 -5.5242 6.0232 20 1 7.7929 -6.1671 6.0631 21 6 5.9158 -5.6635 6.9625 22 7 4.8595 -4.8807 6.9135 23 14 6.0540 -6.9635 8.2968 24 1 7.3285 -7.7078 8.1328 25 1 6.0315 -6.3091 9.6296 26 1 4.9121 -7.9067 8.1890 27 8 2.3075 -1.0839 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.9821 2.1113 0.0004 32 1 5.6147 -1.0230 -0.5152 33 1 4.5762 -2.4686 -0.5153 34 1 4.6856 -1.4519 2.1173 35 1 6.0817 -2.5572 3.6322 36 1 8.8686 -2.7203 1.4822 37 1 10.9482 -3.9541 1.9365 38 1 9.1355 -5.7908 5.3363 39 1 4.1529 -4.9779 7.5710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806349721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:56 Heat of formation + Delta-G solvation = -43.093836 kcal Electronic energy + Delta-G solvation = -27428.326935 eV Core-core repulsion = 23060.711112 eV Total energy + Delta-G solvation = -4367.615823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.23928 -43.64580 -40.27786 -38.81655 -36.51731 -35.27955 -34.82374 -34.08295 -32.69182 -32.41285 -29.60980 -29.20404 -27.77591 -25.57438 -25.39313 -22.74449 -22.42785 -21.71861 -21.31752 -20.58412 -18.54218 -18.33583 -17.90398 -17.23925 -16.93975 -16.61293 -15.74288 -15.27952 -15.17414 -15.09206 -14.97374 -14.67277 -14.49212 -14.28112 -13.85547 -13.64920 -13.55275 -13.47240 -13.27969 -13.20966 -12.99634 -12.68091 -12.32264 -12.13975 -11.63799 -11.62630 -11.39190 -11.00870 -10.83141 -10.73008 -10.52169 -10.04161 -9.80352 -9.53339 -9.18987 -9.03525 -8.96993 -7.88182 -7.09861 -6.61226 -4.18508 1.01247 1.83965 2.12498 2.18885 2.32696 2.98696 3.05412 3.07946 3.13235 3.37361 3.69234 3.84503 4.34883 4.40663 4.43280 4.68246 4.76855 4.86818 4.95051 4.99927 5.11011 5.11882 5.23970 5.34964 5.55550 5.57833 5.73409 5.75131 5.96508 6.02026 6.18510 6.27356 6.54324 6.66093 6.90691 6.92131 7.05824 7.08773 7.25149 7.41122 7.65010 7.83134 8.15802 8.74826 8.85322 9.46615 10.56061 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010208 B = 0.003009 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.210954 B = 9304.319477 C =11800.267478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.038 4.038 3 C -0.047 4.047 4 N -0.459 5.459 5 C 0.170 3.830 6 C 0.244 3.756 7 N -0.745 5.745 8 C 0.710 3.290 9 O -0.581 6.581 10 N -0.662 5.662 11 C 0.080 3.920 12 C -0.049 4.049 13 C -0.226 4.226 14 C 0.128 3.872 15 F -0.151 7.151 16 C -0.257 4.257 17 C 0.158 3.842 18 O -0.169 6.169 19 C -0.390 4.390 20 H 0.095 0.905 21 C 0.042 3.958 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.275 1.275 27 O -0.193 6.193 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.186 0.814 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.402 0.598 35 H 0.412 0.588 36 H 0.137 0.863 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 9.468 -10.568 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.186 4.186 4 N -0.189 5.189 5 C -0.037 4.037 6 C 0.119 3.881 7 N -0.403 5.403 8 C 0.411 3.589 9 O -0.458 6.458 10 N -0.309 5.309 11 C -0.015 4.015 12 C -0.070 4.070 13 C -0.247 4.247 14 C 0.108 3.892 15 F -0.130 7.130 16 C -0.278 4.278 17 C 0.101 3.899 18 O -0.072 6.072 19 C -0.466 4.466 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.494 5.494 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.201 1.201 27 O -0.079 6.079 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.203 0.797 32 H 0.129 0.871 33 H 0.115 0.885 34 H 0.236 0.764 35 H 0.248 0.752 36 H 0.155 0.845 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.995 9.491 -11.273 15.909 hybrid contribution -0.984 -0.794 1.505 1.966 sum -6.979 8.697 -9.767 14.824 Atomic orbital electron populations 1.20329 0.83772 1.04667 1.04023 1.23615 0.95252 0.84551 1.05720 1.23128 0.87634 1.00545 1.07320 1.70474 1.23225 1.09022 1.16144 1.26092 0.84294 0.90260 1.03053 1.19249 0.87733 0.96850 0.84297 1.44921 1.31963 1.55676 1.07757 1.15686 0.80426 0.79172 0.83608 1.90923 1.55668 1.56136 1.43109 1.42160 1.24376 1.57919 1.06406 1.16593 0.86516 1.00075 0.98287 1.20493 0.89609 0.98565 0.98314 1.20451 0.99741 1.03904 1.00564 1.17447 0.81777 0.93865 0.96062 1.91412 1.48608 1.78773 1.94223 1.20853 0.92698 1.09388 1.04831 1.18799 0.87695 0.92021 0.91340 1.83935 1.31672 1.52507 1.39086 1.21392 1.07777 1.10874 1.06588 0.88781 1.25284 0.94712 0.98409 0.97833 1.70018 1.07636 1.36834 1.34938 0.85616 0.78927 0.79304 0.79486 1.18926 1.20036 1.20056 1.84448 1.17745 1.36555 1.69157 0.90133 0.89032 0.89171 0.79722 0.87060 0.88488 0.76391 0.75167 0.84516 0.85882 0.83937 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.43 36.00 0.38 0.01 16 2 C -0.04 -0.35 7.39 -35.69 -0.26 -0.61 16 3 C -0.05 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.46 -5.68 11.29 -11.10 -0.13 -5.81 16 5 C 0.17 2.02 7.71 -12.95 -0.10 1.92 16 6 C 0.24 2.85 6.30 -5.20 -0.03 2.82 16 7 N -0.74 -9.97 5.55 -66.41 -0.37 -10.34 16 8 C 0.71 12.15 8.29 -86.91 -0.72 11.43 16 9 O -0.58 -11.34 14.10 5.29 0.07 -11.27 16 10 N -0.66 -12.13 5.21 -14.07 -0.07 -12.20 16 11 C 0.08 1.65 6.29 -83.44 -0.52 1.13 16 12 C -0.05 -0.94 8.65 -39.43 -0.34 -1.28 16 13 C -0.23 -4.18 10.02 -39.48 -0.40 -4.57 16 14 C 0.13 2.56 7.29 -39.43 -0.29 2.27 16 15 F -0.15 -2.89 17.26 2.25 0.04 -2.85 16 16 C -0.26 -5.59 9.11 -39.36 -0.36 -5.95 16 17 C 0.16 3.62 6.66 -38.94 -0.26 3.36 16 18 O -0.17 -4.40 9.30 0.03 0.00 -4.40 16 19 C -0.39 -10.28 9.44 30.88 0.29 -9.99 16 20 H 0.09 2.34 5.30 -52.49 -0.28 2.06 16 21 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 22 N -0.86 -23.43 13.67 55.48 0.76 -22.67 16 23 Si 0.94 19.70 29.55 -169.99 -5.02 14.67 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 27 O -0.19 -2.27 10.77 5.37 0.06 -2.21 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.40 4.87 8.48 -40.82 -0.35 4.52 16 35 H 0.41 7.23 8.57 -40.82 -0.35 6.88 16 36 H 0.14 2.49 6.47 -52.49 -0.34 2.15 16 37 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 38 H 0.14 3.11 5.71 -52.49 -0.30 2.81 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 352.58 15.07 5.31 5.31 Total: -1.00 -31.89 352.58 -5.98 -37.86 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -3.71 Total: 13.02 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -2.92 Total: 0.87 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.19 Total: -51.02 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.13 Total: -17.87 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.89 -5.98 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806349721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.229 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds