Wall clock time and date at job start Tue Mar 31 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29977 * 119.06768 * 2 1 4 4 C 1.35030 * 121.70709 * 180.02562 * 3 2 1 5 5 S 1.75880 * 130.81915 * 179.97438 * 4 3 2 6 6 C 1.75348 * 92.15550 * 179.83186 * 5 4 3 7 7 C 1.32025 * 111.25359 * 0.31128 * 6 5 4 8 8 C 1.39189 * 119.55830 * 359.97438 * 4 3 2 9 9 C 1.42968 * 117.78696 * 359.97438 * 8 4 3 10 10 O 1.21896 * 120.63980 * 179.97438 * 9 8 4 11 11 N 1.34742 * 118.71199 * 359.97438 * 9 8 4 12 12 N 1.40104 * 119.81535 * 179.97438 * 11 9 8 13 13 C 1.34770 * 120.00301 * 285.04810 * 12 11 9 14 14 O 1.21283 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00301 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47696 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47448 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.47324 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47205 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99754 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99516 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00383 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99607 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47006 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.46941 * 120.00293 * 23 21 19 26 26 H 1.48505 * 109.46765 * 240.00442 * 23 21 19 27 27 H 1.08997 * 109.47257 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46917 * 120.00385 * 1 2 3 29 29 H 1.08998 * 109.47031 * 240.00193 * 1 2 3 30 30 H 1.07998 * 124.37134 * 180.18815 * 6 5 4 31 31 H 1.08002 * 122.60148 * 179.90348 * 7 6 5 32 32 H 0.97000 * 119.99496 * 105.04695 * 12 11 9 33 33 H 1.09001 * 109.47047 * 300.00084 * 15 13 12 34 34 H 1.09000 * 109.46854 * 59.99696 * 15 13 12 35 35 H 1.09001 * 109.47022 * 300.00199 * 16 15 13 36 36 H 1.09006 * 109.46884 * 59.99592 * 16 15 13 37 37 H 1.08994 * 109.47292 * 299.99716 * 17 16 15 38 38 H 1.08998 * 109.47016 * 60.00412 * 17 16 15 39 39 H 1.09001 * 109.47169 * 300.00215 * 18 17 16 40 40 H 1.09000 * 109.47113 * 60.00061 * 18 17 16 41 41 H 0.97004 * 119.99987 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1384 1.1361 0.0000 4 6 3.4873 1.1982 -0.0005 5 16 4.5745 2.5808 -0.0012 6 6 5.9926 1.5495 0.0036 7 6 5.6560 0.2729 -0.0011 8 6 4.2289 0.0204 -0.0005 9 6 3.5138 -1.2175 0.0006 10 8 4.1111 -2.2801 0.0002 11 7 2.1667 -1.1869 0.0021 12 7 1.4426 -2.3863 0.0027 13 6 1.3525 -3.1196 -1.1244 14 8 1.8978 -2.7410 -2.1394 15 6 0.5741 -4.4100 -1.1237 16 6 0.6289 -5.0396 -2.5170 17 6 -0.1608 -6.3500 -2.5160 18 6 -0.1065 -6.9793 -3.9096 19 6 -0.8838 -8.2703 -3.9084 20 1 -1.3685 -8.6080 -3.0042 21 6 -0.9772 -9.0198 -5.0619 22 7 -0.3874 -8.6083 -6.1630 23 14 -1.9413 -10.6198 -5.0607 24 1 -2.5050 -10.8570 -3.7075 25 1 -3.0466 -10.5325 -6.0485 26 1 -1.0391 -11.7417 -5.4252 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 -0.3633 -0.5138 0.8900 30 1 7.0100 1.9119 0.0078 31 1 6.3875 -0.5217 -0.0008 32 1 1.0062 -2.6889 0.8144 33 1 1.0092 -5.0963 -0.3971 34 1 -0.4633 -4.2084 -0.8570 35 1 0.1936 -4.3532 -3.2432 36 1 1.6663 -5.2412 -2.7841 37 1 0.2750 -7.0363 -1.7899 38 1 -1.1982 -6.1488 -2.2488 39 1 -0.5425 -6.2929 -4.6354 40 1 0.9308 -7.1804 -4.1773 41 1 -0.4528 -9.1358 -6.9745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808019992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:41 Heat of formation + Delta-G solvation = 7.637360 kcal Electronic energy + Delta-G solvation = -25381.525795 eV Core-core repulsion = 21582.323019 eV Total energy + Delta-G solvation = -3799.202777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27699 -39.73884 -38.12173 -37.32266 -35.21950 -34.94669 -32.78913 -31.92731 -31.77851 -29.66735 -28.25024 -26.07809 -24.99349 -23.62233 -22.82068 -21.63051 -20.88532 -20.08517 -19.69774 -18.82205 -17.90260 -17.44399 -16.21052 -16.18593 -16.03886 -15.80178 -15.34649 -14.61621 -14.32825 -14.28559 -14.23973 -14.13567 -13.99415 -13.49561 -13.35726 -12.98933 -12.72485 -12.40506 -12.26819 -11.82320 -11.68868 -11.58504 -11.07538 -11.03846 -10.85557 -10.63151 -10.58697 -10.52911 -10.48660 -10.11951 -9.94437 -9.66528 -9.29570 -9.01650 -8.99700 -8.51051 -8.32891 -5.97229 -3.99960 -0.21941 0.60914 1.02441 1.25906 1.43198 1.66855 2.30630 3.07470 3.10472 3.31981 3.39285 3.42826 3.43858 4.01186 4.29225 4.46081 4.50085 4.59270 4.72343 4.84960 4.98295 5.09838 5.17842 5.22757 5.38291 5.38424 5.49501 5.64401 5.70151 5.95939 6.02806 6.13020 6.17190 6.44552 6.72999 6.75215 6.93814 7.11881 7.14902 7.35468 7.71602 7.86201 7.91980 8.03626 8.44918 9.07931 9.63945 11.14082 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027668 B = 0.001928 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.768526 B =14522.627112 C =14944.460069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.418 3.582 3 N -0.495 5.495 4 C 0.079 3.921 5 S 0.200 5.800 6 C -0.231 4.231 7 C -0.060 4.060 8 C -0.231 4.231 9 C 0.563 3.437 10 O -0.499 6.499 11 N -0.330 5.330 12 N -0.535 5.535 13 C 0.519 3.481 14 O -0.504 6.504 15 C -0.123 4.123 16 C -0.105 4.105 17 C -0.109 4.109 18 C 0.019 3.981 19 C -0.520 4.520 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.179 0.821 31 H 0.154 0.846 32 H 0.426 0.574 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 25.209 19.187 32.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.150 3.850 3 N -0.220 5.220 4 C -0.153 4.153 5 S 0.463 5.537 6 C -0.366 4.366 7 C -0.089 4.089 8 C -0.251 4.251 9 C 0.357 3.643 10 O -0.371 6.371 11 N -0.140 5.140 12 N -0.289 5.289 13 C 0.307 3.693 14 O -0.373 6.373 15 C -0.165 4.165 16 C -0.143 4.143 17 C -0.147 4.147 18 C -0.018 4.018 19 C -0.558 4.558 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.210 1.210 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.197 0.803 31 H 0.171 0.829 32 H 0.269 0.731 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.194 27.096 18.234 33.242 hybrid contribution 0.082 -3.207 0.283 3.221 sum 6.276 23.889 18.517 30.869 Atomic orbital electron populations 1.21005 0.84062 1.06718 1.04897 1.23577 0.96876 0.78559 0.86000 1.67937 1.06634 1.22118 1.25318 1.24068 0.93754 0.97742 0.99724 1.84093 0.92874 1.03777 1.72979 1.25195 1.02888 0.96313 1.12186 1.20473 0.92682 0.97048 0.98711 1.20749 0.95408 0.91377 1.17530 1.16913 0.79661 0.89996 0.77718 1.90955 1.66061 1.31509 1.48621 1.45574 1.05311 0.99930 1.63188 1.45866 1.53350 1.13920 1.15741 1.21953 0.80345 0.85404 0.81570 1.90787 1.44594 1.69926 1.31994 1.21828 1.00222 0.91240 1.03207 1.21528 1.02356 0.98003 0.92434 1.21646 0.97942 0.93678 1.01419 1.19105 0.97288 0.95124 0.90294 1.21301 1.32237 1.06239 0.96066 0.92645 1.25052 0.95848 0.98020 0.95716 1.69982 1.43966 1.38656 1.00793 0.86550 0.79823 0.83724 0.77972 1.19762 1.21057 1.21049 0.87328 0.88255 0.88427 0.80341 0.82869 0.73116 0.88032 0.88029 0.91525 0.91501 0.93239 0.93242 0.96551 0.96547 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 9.45 36.00 0.34 -0.21 16 2 C 0.42 4.05 7.67 -155.16 -1.19 2.86 16 3 N -0.50 -5.35 10.27 -8.77 -0.09 -5.44 16 4 C 0.08 0.89 7.70 -15.79 -0.12 0.77 16 5 S 0.20 1.59 23.24 -107.50 -2.50 -0.91 16 6 C -0.23 -1.74 11.04 28.81 0.32 -1.42 16 7 C -0.06 -0.62 10.31 -38.86 -0.40 -1.02 16 8 C -0.23 -2.97 6.08 -105.07 -0.64 -3.61 16 9 C 0.56 8.38 7.26 -14.44 -0.10 8.28 16 10 O -0.50 -9.02 17.21 5.01 0.09 -8.93 16 11 N -0.33 -3.93 2.90 -11.73 -0.03 -3.96 16 12 N -0.53 -5.33 4.74 31.22 0.15 -5.19 16 13 C 0.52 6.93 7.60 -10.99 -0.08 6.84 16 14 O -0.50 -9.34 16.09 5.55 0.09 -9.25 16 15 C -0.12 -1.43 5.70 -27.89 -0.16 -1.59 16 16 C -0.11 -1.77 4.50 -26.74 -0.12 -1.89 16 17 C -0.11 -2.14 5.15 -26.73 -0.14 -2.28 16 18 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 19 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 21 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 22 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 23 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H 0.11 0.43 8.09 -51.93 -0.42 0.01 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.43 2.34 8.83 -182.59 -1.61 0.73 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 36 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -39.11 371.00 -10.48 -49.59 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -6.64 Total: -5.06 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.85 Total: -6.51 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.76 Total: -41.24 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.50 Total: -0.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.11 -10.48 -49.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808019992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.232 kcal (2) G-P(sol) polarization free energy of solvation -39.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds