Wall clock time and date at job start Tue Mar 31 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29977 * 119.06768 * 2 1 4 4 C 1.35030 * 121.70709 * 180.02562 * 3 2 1 5 5 S 1.75880 * 130.81915 * 179.97438 * 4 3 2 6 6 C 1.75348 * 92.15550 * 179.83186 * 5 4 3 7 7 C 1.32025 * 111.25359 * 0.31128 * 6 5 4 8 8 C 1.39189 * 119.55830 * 359.97438 * 4 3 2 9 9 C 1.42968 * 117.78696 * 359.97438 * 8 4 3 10 10 O 1.21896 * 120.63980 * 179.97438 * 9 8 4 11 11 N 1.34742 * 118.71199 * 359.97438 * 9 8 4 12 12 N 1.40104 * 119.81535 * 179.97438 * 11 9 8 13 13 C 1.34770 * 120.00301 * 285.04810 * 12 11 9 14 14 O 1.21283 * 119.99822 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00301 * 179.97438 * 13 12 11 16 16 C 1.52996 * 109.47696 * 179.97438 * 15 13 12 17 17 C 1.52992 * 109.47448 * 179.97438 * 16 15 13 18 18 C 1.53005 * 109.47324 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.47205 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99754 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99516 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00383 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99607 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47006 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.46941 * 120.00293 * 23 21 19 26 26 H 1.48505 * 109.46765 * 240.00442 * 23 21 19 27 27 H 1.08997 * 109.47257 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.46917 * 120.00385 * 1 2 3 29 29 H 1.08998 * 109.47031 * 240.00193 * 1 2 3 30 30 H 1.07998 * 124.37134 * 180.18815 * 6 5 4 31 31 H 1.08002 * 122.60148 * 179.90348 * 7 6 5 32 32 H 0.97000 * 119.99496 * 105.04695 * 12 11 9 33 33 H 1.09001 * 109.47047 * 300.00084 * 15 13 12 34 34 H 1.09000 * 109.46854 * 59.99696 * 15 13 12 35 35 H 1.09001 * 109.47022 * 300.00199 * 16 15 13 36 36 H 1.09006 * 109.46884 * 59.99592 * 16 15 13 37 37 H 1.08994 * 109.47292 * 299.99716 * 17 16 15 38 38 H 1.08998 * 109.47016 * 60.00412 * 17 16 15 39 39 H 1.09001 * 109.47169 * 300.00215 * 18 17 16 40 40 H 1.09000 * 109.47113 * 60.00061 * 18 17 16 41 41 H 0.97004 * 119.99987 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1384 1.1361 0.0000 4 6 3.4873 1.1982 -0.0005 5 16 4.5745 2.5808 -0.0012 6 6 5.9926 1.5495 0.0036 7 6 5.6560 0.2729 -0.0011 8 6 4.2289 0.0204 -0.0005 9 6 3.5138 -1.2175 0.0006 10 8 4.1111 -2.2801 0.0002 11 7 2.1667 -1.1869 0.0021 12 7 1.4426 -2.3863 0.0027 13 6 1.3525 -3.1196 -1.1244 14 8 1.8978 -2.7410 -2.1394 15 6 0.5741 -4.4100 -1.1237 16 6 0.6289 -5.0396 -2.5170 17 6 -0.1608 -6.3500 -2.5160 18 6 -0.1065 -6.9793 -3.9096 19 6 -0.8838 -8.2703 -3.9084 20 1 -1.3685 -8.6080 -3.0042 21 6 -0.9772 -9.0198 -5.0619 22 7 -0.3874 -8.6083 -6.1630 23 14 -1.9413 -10.6198 -5.0607 24 1 -2.5050 -10.8570 -3.7075 25 1 -3.0466 -10.5325 -6.0485 26 1 -1.0391 -11.7417 -5.4252 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 -0.3633 -0.5138 0.8900 30 1 7.0100 1.9119 0.0078 31 1 6.3875 -0.5217 -0.0008 32 1 1.0062 -2.6889 0.8144 33 1 1.0092 -5.0963 -0.3971 34 1 -0.4633 -4.2084 -0.8570 35 1 0.1936 -4.3532 -3.2432 36 1 1.6663 -5.2412 -2.7841 37 1 0.2750 -7.0363 -1.7899 38 1 -1.1982 -6.1488 -2.2488 39 1 -0.5425 -6.2929 -4.6354 40 1 0.9308 -7.1804 -4.1773 41 1 -0.4528 -9.1358 -6.9745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808019992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:41 Heat of formation + Delta-G solvation = -19.148670 kcal Electronic energy + Delta-G solvation = -25382.687325 eV Core-core repulsion = 21582.323019 eV Total energy + Delta-G solvation = -3800.364306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.17270 -40.79339 -39.13340 -38.19087 -36.66662 -36.02604 -34.66527 -33.06232 -32.42862 -31.26242 -28.95200 -27.65133 -26.09317 -24.49831 -24.27880 -22.61915 -22.00902 -21.62618 -20.50151 -19.72994 -18.76771 -18.51446 -18.37716 -17.02854 -16.96213 -16.93250 -16.51281 -16.18934 -15.57555 -15.57539 -15.01978 -15.00723 -14.80961 -14.56591 -14.22286 -14.02387 -13.85857 -13.63881 -13.38396 -13.36805 -12.91760 -12.85693 -12.34963 -12.31649 -12.19870 -12.17665 -12.02638 -11.79750 -11.53814 -11.38004 -11.37711 -11.20402 -10.94573 -10.88192 -10.55535 -9.75740 -9.27058 -8.18507 -6.30431 -1.00077 -0.13381 0.19265 0.33037 0.73657 0.94530 1.27810 1.41010 1.41838 1.55245 2.17531 2.25417 2.42295 2.75032 3.14640 3.23815 3.46080 3.60729 3.87178 3.95931 4.11425 4.12295 4.51329 4.51943 4.58421 4.59330 4.67266 4.76145 4.79334 4.85671 4.95342 4.99758 5.11768 5.16358 5.26828 5.33677 5.38023 5.57859 5.78963 5.89187 5.94637 6.25470 6.28617 6.36770 6.89015 6.97514 7.39421 8.93964 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027668 B = 0.001928 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.768526 B =14522.627112 C =14944.460069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.413 3.587 3 N -0.503 5.503 4 C 0.059 3.941 5 S 0.255 5.745 6 C -0.209 4.209 7 C -0.091 4.091 8 C -0.266 4.266 9 C 0.548 3.452 10 O -0.551 6.551 11 N -0.335 5.335 12 N -0.513 5.513 13 C 0.522 3.478 14 O -0.566 6.566 15 C -0.110 4.110 16 C -0.099 4.099 17 C -0.094 4.094 18 C 0.016 3.984 19 C -0.538 4.538 20 H 0.069 0.931 21 C -0.010 4.010 22 N -0.939 5.939 23 Si 0.970 3.030 24 H -0.255 1.255 25 H -0.279 1.279 26 H -0.282 1.282 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.216 0.784 31 H 0.150 0.850 32 H 0.450 0.550 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.072 0.928 39 H -0.014 1.014 40 H -0.021 1.021 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 26.197 21.754 34.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 N -0.227 5.227 4 C -0.173 4.173 5 S 0.518 5.482 6 C -0.343 4.343 7 C -0.120 4.120 8 C -0.285 4.285 9 C 0.344 3.656 10 O -0.428 6.428 11 N -0.144 5.144 12 N -0.269 5.269 13 C 0.312 3.688 14 O -0.440 6.440 15 C -0.151 4.151 16 C -0.137 4.137 17 C -0.131 4.131 18 C -0.021 4.021 19 C -0.576 4.576 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.794 3.206 24 H -0.178 1.178 25 H -0.205 1.205 26 H -0.208 1.208 27 H 0.141 0.859 28 H 0.118 0.882 29 H 0.151 0.849 30 H 0.233 0.767 31 H 0.168 0.832 32 H 0.297 0.703 33 H 0.146 0.854 34 H 0.168 0.832 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.005 0.995 40 H -0.002 1.002 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.346 28.123 20.880 35.296 hybrid contribution 0.689 -3.357 -0.532 3.468 sum 5.035 24.766 20.348 32.446 Atomic orbital electron populations 1.21270 0.80525 1.08269 1.06391 1.24526 0.98627 0.77458 0.84821 1.68033 1.06445 1.22540 1.25677 1.24559 0.94310 0.98908 0.99568 1.83912 0.91404 1.01668 1.71221 1.25666 1.04641 0.95232 1.08790 1.20557 0.91827 0.98311 1.01256 1.20974 0.96799 0.91270 1.19486 1.17409 0.80728 0.90175 0.77263 1.90900 1.67345 1.33026 1.51508 1.45608 1.04893 1.01059 1.62844 1.45568 1.52055 1.13323 1.15933 1.22227 0.79497 0.85778 0.81314 1.90777 1.47282 1.71460 1.34483 1.21732 1.03088 0.90343 0.99938 1.21297 0.99674 0.96883 0.95863 1.21430 0.99894 0.94583 0.97220 1.19083 0.94480 0.94766 0.93780 1.21795 1.32184 1.06958 0.96619 0.91248 1.26118 0.96990 1.02276 0.95284 1.70144 1.45687 1.40517 1.01668 0.85330 0.78085 0.78380 0.78822 1.17836 1.20503 1.20793 0.85865 0.88248 0.84949 0.76703 0.83227 0.70255 0.85449 0.83163 0.93111 0.94743 0.92001 0.90924 0.99517 1.00222 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.45 71.23 0.67 -0.13 16 2 C 0.41 7.61 7.67 138.04 1.06 8.67 16 3 N -0.50 -10.48 10.27 -181.67 -1.87 -12.35 16 4 C 0.06 1.32 7.70 84.43 0.65 1.97 16 5 S 0.26 3.59 23.24 -56.49 -1.31 2.28 16 6 C -0.21 -2.81 11.04 66.90 0.74 -2.07 16 7 C -0.09 -1.92 10.31 23.06 0.24 -1.69 16 8 C -0.27 -7.11 6.08 -20.15 -0.12 -7.23 16 9 C 0.55 17.15 7.26 85.43 0.62 17.77 16 10 O -0.55 -21.27 17.21 -4.98 -0.09 -21.35 16 11 N -0.34 -7.97 2.90 -309.18 -0.90 -8.86 16 12 N -0.51 -9.63 4.74 -173.54 -0.82 -10.45 16 13 C 0.52 13.68 7.60 87.66 0.67 14.34 16 14 O -0.57 -21.91 16.09 -3.04 -0.05 -21.96 16 15 C -0.11 -2.30 5.70 29.85 0.17 -2.13 16 16 C -0.10 -3.36 4.50 30.59 0.14 -3.23 16 17 C -0.09 -3.61 5.15 30.59 0.16 -3.45 16 18 C 0.02 0.87 4.97 29.85 0.15 1.02 16 19 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 20 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 21 C -0.01 -0.57 5.46 84.66 0.46 -0.11 16 22 N -0.94 -59.21 13.29 21.45 0.28 -58.93 16 23 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 24 H -0.25 -10.87 7.11 99.48 0.71 -10.16 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 27 H 0.12 0.62 8.09 -2.39 -0.02 0.60 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.83 16 29 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.22 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.45 3.73 8.83 -213.32 -1.88 1.85 16 33 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 36 H 0.03 1.37 8.10 -2.38 -0.02 1.35 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 40 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -92.62 371.00 2.29 -90.33 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -0.82 Total: 1.44 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 5.83 Total: -6.74 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -3.30 Total: -90.59 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.13 Total: -43.31 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.31 Total: 2.28 kcal Total: -92.62 2.29 -90.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808019992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.177 kcal (2) G-P(sol) polarization free energy of solvation -92.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds