Wall clock time and date at job start Tue Mar 31 2020 18:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50704 * 109.47197 * 2 1 4 4 C 1.35253 * 126.06656 * 85.34084 * 3 2 1 5 5 C 1.40423 * 107.85750 * 180.13681 * 4 3 2 6 6 N 1.39994 * 125.97680 * 179.83141 * 5 4 3 7 7 S 1.65601 * 120.00156 * 185.07543 * 6 5 4 8 8 O 1.42092 * 106.40051 * 181.09970 * 7 6 5 9 9 O 1.42104 * 106.40053 * 48.17795 * 7 6 5 10 10 C 1.76205 * 107.21772 * 294.64206 * 7 6 5 11 11 C 1.37635 * 120.13045 * 115.33761 * 10 7 6 12 12 C 1.38612 * 120.24707 * 180.31976 * 11 10 7 13 13 C 1.38653 * 120.50080 * 359.67001 * 12 11 10 14 14 C 1.37599 * 120.25004 * 359.97438 * 13 12 11 15 15 C 1.40698 * 120.12388 * 295.03159 * 10 7 6 16 16 C 1.41398 * 120.24389 * 359.97438 * 15 10 7 17 17 H 1.07994 * 120.00055 * 28.34705 * 16 15 10 18 18 C 1.39947 * 119.99921 * 208.33654 * 16 15 10 19 19 N 1.30819 * 120.00063 * 195.09006 * 18 16 15 20 20 Si 1.86806 * 119.99977 * 15.09364 * 18 16 15 21 21 H 1.48501 * 109.46930 * 264.57518 * 20 18 16 22 22 H 1.48502 * 109.46991 * 24.57192 * 20 18 16 23 23 H 1.48492 * 109.47096 * 144.57150 * 20 18 16 24 24 N 1.31232 * 108.04885 * 359.56707 * 5 4 3 25 25 N 1.34955 * 126.06607 * 264.99629 * 3 2 1 26 26 C 1.46503 * 125.97105 * 0.02635 * 25 3 2 27 27 H 1.08992 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46885 * 300.00386 * 1 2 3 29 29 H 1.08994 * 109.46885 * 60.00060 * 1 2 3 30 30 H 1.09001 * 109.47298 * 239.99511 * 2 1 3 31 31 H 1.09003 * 109.46804 * 119.99694 * 2 1 3 32 32 H 1.07997 * 126.07363 * 0.02562 * 4 3 2 33 33 H 0.96993 * 119.99531 * 5.07415 * 6 5 4 34 34 H 1.08003 * 119.87744 * 0.02562 * 11 10 7 35 35 H 1.08006 * 119.74637 * 179.69255 * 12 11 10 36 36 H 1.08004 * 119.87245 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.12583 * 180.02562 * 14 13 12 38 38 H 0.97000 * 120.00145 * 174.98688 * 19 18 16 39 39 H 1.09000 * 109.46801 * 275.30472 * 26 25 3 40 40 H 1.08994 * 109.47492 * 35.30908 * 26 25 3 41 41 H 1.09001 * 109.46752 * 155.31320 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2141 2.2012 1.0897 5 6 2.6894 3.4480 0.6521 6 7 3.0010 4.5419 1.4682 7 16 3.4326 5.9877 0.7858 8 8 3.7074 6.8734 1.8625 9 8 2.4655 6.2619 -0.2187 10 6 4.9617 5.7333 -0.0520 11 6 5.0286 5.8587 -1.4210 12 6 6.2288 5.6526 -2.0832 13 6 7.3755 5.3250 -1.3759 14 6 7.3336 5.2014 -0.0062 15 6 6.1203 5.4073 0.6766 16 6 6.0651 5.2827 2.0840 17 1 5.1455 4.9817 2.5638 18 6 7.2021 5.5490 2.8552 19 7 7.2521 5.1592 4.1030 20 14 8.6482 6.4614 2.1030 21 1 9.6530 5.4817 1.6172 22 1 8.1735 7.2890 0.9650 23 1 9.2677 7.3386 3.1285 24 7 2.7958 3.4065 -0.6553 25 7 2.3870 2.1382 -1.0867 26 6 2.3505 1.6719 -2.4751 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.0254 1.9166 2.1142 33 1 2.9640 4.4529 2.4333 34 1 4.1417 6.1141 -1.9819 35 1 6.2710 5.7483 -3.1581 36 1 8.3053 5.1670 -1.9022 37 1 8.2281 4.9465 0.5428 38 1 8.0666 5.2787 4.6162 39 1 3.2698 1.1317 -2.7012 40 1 1.4963 1.0092 -2.6135 41 1 2.2583 2.5279 -3.1435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817354279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:42 Heat of formation + Delta-G solvation = 22.023225 kcal Electronic energy + Delta-G solvation = -27399.486033 eV Core-core repulsion = 23600.907075 eV Total energy + Delta-G solvation = -3798.578959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.03938 -37.81802 -36.29283 -35.40712 -34.91589 -33.83901 -33.59571 -31.69820 -30.67783 -30.05311 -28.85558 -25.98197 -25.36963 -23.80146 -22.06050 -21.16471 -20.90728 -20.08464 -18.21228 -17.71478 -17.21254 -16.83635 -16.15882 -15.58202 -15.47201 -15.24905 -14.59117 -14.39909 -14.15939 -13.84501 -13.73595 -13.45022 -13.26856 -13.01461 -12.75967 -12.59206 -12.40320 -12.22471 -11.91975 -11.78990 -11.39278 -11.27654 -11.20604 -11.16908 -11.12295 -10.93455 -10.85646 -10.73555 -10.34501 -10.12104 -9.89443 -9.51281 -9.22524 -8.46800 -8.17104 -7.95673 -7.77340 -7.17422 -4.82999 1.34460 2.10042 2.15264 2.60396 2.63230 2.98820 3.11603 3.17147 3.21665 3.74527 3.83030 4.31304 4.52849 4.62903 4.70958 4.86001 5.09030 5.13268 5.23770 5.31702 5.36245 5.48901 5.51818 5.57508 5.67459 5.88742 5.89432 5.96188 5.99611 6.05565 6.19353 6.26201 6.47208 6.69239 6.86796 6.98765 7.15470 7.25523 7.27429 7.40182 7.46468 7.60994 7.83684 8.04351 8.07856 8.30863 8.52240 9.80380 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.004618 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.940390 B = 6061.675138 C = 6308.786962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C 0.098 3.902 4 C -0.283 4.283 5 C 0.334 3.666 6 N -1.017 6.017 7 S 2.693 3.307 8 O -0.953 6.953 9 O -0.973 6.973 10 C -0.755 4.755 11 C 0.037 3.963 12 C -0.262 4.262 13 C -0.041 4.041 14 C -0.238 4.238 15 C 0.161 3.839 16 C -0.431 4.431 17 H 0.098 0.902 18 C 0.090 3.910 19 N -0.782 5.782 20 Si 0.916 3.084 21 H -0.268 1.268 22 H -0.237 1.237 23 H -0.286 1.286 24 N -0.306 5.306 25 N -0.367 5.367 26 C 0.106 3.894 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.431 0.569 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.293 0.707 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 -10.587 -6.493 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.031 4.031 4 C -0.316 4.316 5 C 0.075 3.925 6 N -0.766 5.766 7 S 2.791 3.209 8 O -0.943 6.943 9 O -0.964 6.964 10 C -0.850 4.850 11 C 0.017 3.983 12 C -0.282 4.282 13 C -0.060 4.060 14 C -0.257 4.257 15 C 0.156 3.844 16 C -0.458 4.458 17 H 0.116 0.884 18 C -0.133 4.133 19 N -0.403 5.403 20 Si 0.742 3.258 21 H -0.194 1.194 22 H -0.160 1.160 23 H -0.213 1.213 24 N -0.135 5.135 25 N -0.150 5.150 26 C -0.036 4.036 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.108 0.892 32 H 0.166 0.834 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.573 -9.108 -7.417 13.975 hybrid contribution 1.269 -0.675 0.801 1.646 sum -6.303 -9.783 -6.616 13.387 Atomic orbital electron populations 1.21739 0.94062 1.01896 1.02728 1.20195 0.96397 0.89479 1.03822 1.20856 0.99910 0.95235 0.87063 1.20836 1.17711 0.93538 0.99472 1.18638 0.95945 0.88478 0.89479 1.53260 1.80875 1.26056 1.16418 1.01533 0.74361 0.71757 0.73251 1.93590 1.85986 1.59997 1.54773 1.93489 1.60347 1.82610 1.59916 1.29667 1.17752 1.32722 1.04881 1.20317 0.96731 0.89153 0.92076 1.20449 0.93805 1.16099 0.97880 1.20792 0.96707 0.94349 0.94134 1.21058 0.98020 1.12417 0.94228 1.17053 0.90124 0.84717 0.92537 1.19755 0.99581 1.36702 0.89768 0.88404 1.26176 0.99852 0.92886 0.94374 1.69585 1.29143 1.32817 1.08804 0.86260 0.79295 0.80391 0.79881 1.19444 1.15996 1.21293 1.77675 1.27478 0.99208 1.09163 1.47945 1.52080 1.08960 1.06043 1.21767 1.02466 1.00916 0.78443 0.91969 0.91845 0.92708 0.90741 0.89153 0.83390 0.73291 0.86849 0.88255 0.88403 0.87831 0.89653 0.90967 0.90049 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.90 37.16 0.37 -0.75 16 2 C -0.06 -0.53 6.08 -27.88 -0.17 -0.70 16 3 C 0.10 1.34 6.18 -82.28 -0.51 0.83 16 4 C -0.28 -4.49 10.74 -39.82 -0.43 -4.92 16 5 C 0.33 6.52 7.69 -154.54 -1.19 5.33 16 6 N -1.02 -20.48 5.05 31.39 0.16 -20.32 16 7 S 2.69 62.80 4.70 -107.50 -0.50 62.29 16 8 O -0.95 -24.38 16.57 -57.17 -0.95 -25.32 16 9 O -0.97 -23.48 16.28 -57.17 -0.93 -24.41 16 10 C -0.75 -18.50 5.83 -38.87 -0.23 -18.72 16 11 C 0.04 0.85 9.53 -39.66 -0.38 0.47 16 12 C -0.26 -5.59 10.05 -39.29 -0.39 -5.98 16 13 C -0.04 -0.89 10.02 -39.66 -0.40 -1.29 16 14 C -0.24 -5.71 7.00 -38.87 -0.27 -5.98 16 15 C 0.16 4.12 5.17 -106.82 -0.55 3.57 16 16 C -0.43 -11.41 8.19 -37.74 -0.31 -11.72 16 17 H 0.10 2.58 5.91 -52.49 -0.31 2.27 16 18 C 0.09 2.31 5.45 -17.34 -0.09 2.22 16 19 N -0.78 -19.89 13.92 55.55 0.77 -19.11 16 20 Si 0.92 20.53 24.40 -169.99 -4.15 16.38 16 21 H -0.27 -5.66 6.74 56.52 0.38 -5.28 16 22 H -0.24 -5.53 6.61 56.52 0.37 -5.16 16 23 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 24 N -0.31 -6.12 11.67 31.41 0.37 -5.76 16 25 N -0.37 -5.66 4.01 -63.90 -0.26 -5.91 16 26 C 0.11 1.10 10.95 59.85 0.66 1.76 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.54 7.61 -51.93 -0.39 0.14 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 33 H 0.43 7.57 8.68 -34.47 -0.30 7.27 16 34 H 0.11 2.45 7.33 -52.48 -0.38 2.07 16 35 H 0.10 1.82 8.06 -52.48 -0.42 1.39 16 36 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.10 2.40 4.34 -52.49 -0.23 2.17 16 38 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.57 7.80 -51.93 -0.41 0.17 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -33.99 352.82 -9.08 -43.07 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.01 Total: 9.65 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: -3.90 Total: -35.87 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 1.04 Total: -51.10 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -1.88 Total: -49.74 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.15 Total: 16.38 kcal Atomic # 16 Polarization: 62.80 SS G_CDS: -0.50 Total: 62.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.99 -9.08 -43.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817354279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.094 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds