Wall clock time and date at job start Tue Mar 31 2020 18:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50704 * 109.47197 * 2 1 4 4 C 1.35253 * 126.06656 * 85.34084 * 3 2 1 5 5 C 1.40423 * 107.85750 * 180.13681 * 4 3 2 6 6 N 1.39994 * 125.97680 * 179.83141 * 5 4 3 7 7 S 1.65601 * 120.00156 * 185.07543 * 6 5 4 8 8 O 1.42092 * 106.40051 * 181.09970 * 7 6 5 9 9 O 1.42104 * 106.40053 * 48.17795 * 7 6 5 10 10 C 1.76205 * 107.21772 * 294.64206 * 7 6 5 11 11 C 1.37635 * 120.13045 * 115.33761 * 10 7 6 12 12 C 1.38612 * 120.24707 * 180.31976 * 11 10 7 13 13 C 1.38653 * 120.50080 * 359.67001 * 12 11 10 14 14 C 1.37599 * 120.25004 * 359.97438 * 13 12 11 15 15 C 1.40698 * 120.12388 * 295.03159 * 10 7 6 16 16 C 1.41398 * 120.24389 * 359.97438 * 15 10 7 17 17 H 1.07994 * 120.00055 * 28.34705 * 16 15 10 18 18 C 1.39947 * 119.99921 * 208.33654 * 16 15 10 19 19 N 1.30819 * 120.00063 * 195.09006 * 18 16 15 20 20 Si 1.86806 * 119.99977 * 15.09364 * 18 16 15 21 21 H 1.48501 * 109.46930 * 264.57518 * 20 18 16 22 22 H 1.48502 * 109.46991 * 24.57192 * 20 18 16 23 23 H 1.48492 * 109.47096 * 144.57150 * 20 18 16 24 24 N 1.31232 * 108.04885 * 359.56707 * 5 4 3 25 25 N 1.34955 * 126.06607 * 264.99629 * 3 2 1 26 26 C 1.46503 * 125.97105 * 0.02635 * 25 3 2 27 27 H 1.08992 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46885 * 300.00386 * 1 2 3 29 29 H 1.08994 * 109.46885 * 60.00060 * 1 2 3 30 30 H 1.09001 * 109.47298 * 239.99511 * 2 1 3 31 31 H 1.09003 * 109.46804 * 119.99694 * 2 1 3 32 32 H 1.07997 * 126.07363 * 0.02562 * 4 3 2 33 33 H 0.96993 * 119.99531 * 5.07415 * 6 5 4 34 34 H 1.08003 * 119.87744 * 0.02562 * 11 10 7 35 35 H 1.08006 * 119.74637 * 179.69255 * 12 11 10 36 36 H 1.08004 * 119.87245 * 180.02562 * 13 12 11 37 37 H 1.08002 * 120.12583 * 180.02562 * 14 13 12 38 38 H 0.97000 * 120.00145 * 174.98688 * 19 18 16 39 39 H 1.09000 * 109.46801 * 275.30472 * 26 25 3 40 40 H 1.08994 * 109.47492 * 35.30908 * 26 25 3 41 41 H 1.09001 * 109.46752 * 155.31320 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2141 2.2012 1.0897 5 6 2.6894 3.4480 0.6521 6 7 3.0010 4.5419 1.4682 7 16 3.4326 5.9877 0.7858 8 8 3.7074 6.8734 1.8625 9 8 2.4655 6.2619 -0.2187 10 6 4.9617 5.7333 -0.0520 11 6 5.0286 5.8587 -1.4210 12 6 6.2288 5.6526 -2.0832 13 6 7.3755 5.3250 -1.3759 14 6 7.3336 5.2014 -0.0062 15 6 6.1203 5.4073 0.6766 16 6 6.0651 5.2827 2.0840 17 1 5.1455 4.9817 2.5638 18 6 7.2021 5.5490 2.8552 19 7 7.2521 5.1592 4.1030 20 14 8.6482 6.4614 2.1030 21 1 9.6530 5.4817 1.6172 22 1 8.1735 7.2890 0.9650 23 1 9.2677 7.3386 3.1285 24 7 2.7958 3.4065 -0.6553 25 7 2.3870 2.1382 -1.0867 26 6 2.3505 1.6719 -2.4751 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.0254 1.9166 2.1142 33 1 2.9640 4.4529 2.4333 34 1 4.1417 6.1141 -1.9819 35 1 6.2710 5.7483 -3.1581 36 1 8.3053 5.1670 -1.9022 37 1 8.2281 4.9465 0.5428 38 1 8.0666 5.2787 4.6162 39 1 3.2698 1.1317 -2.7012 40 1 1.4963 1.0092 -2.6135 41 1 2.2583 2.5279 -3.1435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817354279.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:41 Heat of formation + Delta-G solvation = -1.852806 kcal Electronic energy + Delta-G solvation = -27400.521376 eV Core-core repulsion = 23600.907075 eV Total energy + Delta-G solvation = -3799.614301 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25236 -39.62623 -38.19039 -36.84966 -36.76016 -35.67831 -34.51289 -32.90424 -32.49768 -31.84320 -29.93945 -27.25010 -27.02871 -24.59395 -23.84582 -22.97928 -22.31678 -21.33416 -19.82452 -19.59973 -18.65218 -18.50545 -17.75814 -17.18427 -16.85601 -16.50387 -16.22322 -15.91164 -15.57634 -15.31975 -15.22866 -14.81775 -14.57919 -14.18128 -14.15473 -13.96089 -13.64853 -13.53117 -13.26317 -13.19460 -13.13263 -13.09940 -12.98410 -12.73888 -12.58322 -12.32903 -12.16873 -12.13674 -11.91213 -11.70792 -11.41470 -11.28798 -11.01298 -9.96742 -9.73511 -9.60901 -9.23836 -9.03974 -6.75317 -0.43409 0.33696 0.77742 0.94169 1.19654 1.35283 1.42728 1.46636 1.82453 2.02952 2.19898 2.48929 2.82915 3.28390 3.51550 3.62325 3.73530 4.14755 4.19652 4.27381 4.29476 4.42756 4.50722 4.56882 4.61122 4.67691 4.72130 4.72975 4.84462 4.87675 4.91482 5.10901 5.16447 5.22873 5.36653 5.43037 5.53121 5.54830 5.62420 5.81036 5.94741 5.97481 6.18009 6.23350 6.45977 6.63896 6.76147 7.99317 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013948 B = 0.004618 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.940390 B = 6061.675138 C = 6308.786962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C 0.115 3.885 4 C -0.306 4.306 5 C 0.302 3.698 6 N -1.013 6.013 7 S 2.708 3.292 8 O -0.986 6.986 9 O -0.987 6.987 10 C -0.767 4.767 11 C 0.021 3.979 12 C -0.249 4.249 13 C -0.037 4.037 14 C -0.260 4.260 15 C 0.146 3.854 16 C -0.468 4.468 17 H 0.081 0.919 18 C 0.055 3.945 19 N -0.814 5.814 20 Si 0.958 3.042 21 H -0.243 1.243 22 H -0.253 1.253 23 H -0.274 1.274 24 N -0.354 5.354 25 N -0.366 5.366 26 C 0.092 3.908 27 H 0.087 0.913 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.165 0.835 33 H 0.437 0.563 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.110 0.890 38 H 0.303 0.697 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.882 -12.743 -8.963 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.095 4.095 3 C -0.015 4.015 4 C -0.339 4.339 5 C 0.044 3.956 6 N -0.766 5.766 7 S 2.806 3.194 8 O -0.977 6.977 9 O -0.978 6.978 10 C -0.863 4.863 11 C 0.001 3.999 12 C -0.269 4.269 13 C -0.055 4.055 14 C -0.279 4.279 15 C 0.141 3.859 16 C -0.496 4.496 17 H 0.099 0.901 18 C -0.164 4.164 19 N -0.438 5.438 20 Si 0.780 3.220 21 H -0.168 1.168 22 H -0.177 1.177 23 H -0.201 1.201 24 N -0.184 5.184 25 N -0.150 5.150 26 C -0.047 4.047 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.182 0.818 33 H 0.275 0.725 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.027 -11.273 -9.892 16.562 hybrid contribution 0.961 -0.118 1.360 1.669 sum -6.066 -11.391 -8.532 15.471 Atomic orbital electron populations 1.21725 0.92896 1.03375 1.02097 1.20419 0.97147 0.86186 1.05759 1.21602 0.97360 0.96784 0.85725 1.21164 1.18776 0.92623 1.01307 1.18978 0.97537 0.89197 0.89849 1.52796 1.81012 1.25875 1.16888 1.00837 0.74051 0.71909 0.72564 1.93536 1.86388 1.61971 1.55784 1.93453 1.60653 1.83341 1.60312 1.29824 1.17931 1.32704 1.05849 1.20578 0.98042 0.89647 0.91611 1.20947 0.92797 1.13342 0.99856 1.21275 0.98549 0.92374 0.93326 1.21274 0.97662 1.13376 0.95597 1.17262 0.91315 0.84879 0.92435 1.19852 0.99773 1.39239 0.90691 0.90095 1.26810 1.01650 0.93222 0.94748 1.69588 1.30390 1.34206 1.09582 0.85630 0.77534 0.79808 0.78989 1.16811 1.17720 1.20063 1.77506 1.29069 1.02297 1.09532 1.48364 1.50899 1.07695 1.08039 1.22217 1.05083 1.01489 0.75944 0.89397 0.92956 0.92965 0.88205 0.87820 0.81754 0.72492 0.86150 0.84406 0.84139 0.87246 0.88613 0.89390 0.86076 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.90 71.98 0.71 -1.00 16 2 C -0.06 -0.80 6.08 29.85 0.18 -0.62 16 3 C 0.11 2.96 6.18 41.39 0.26 3.22 16 4 C -0.31 -9.73 10.74 22.11 0.24 -9.50 16 5 C 0.30 12.13 7.69 133.38 1.03 13.16 16 6 N -1.01 -43.14 5.05 -54.60 -0.28 -43.42 16 7 S 2.71 131.99 4.70 -56.49 -0.27 131.72 16 8 O -0.99 -53.34 16.57 -128.00 -2.12 -55.46 16 9 O -0.99 -49.30 16.28 -128.00 -2.08 -51.38 16 10 C -0.77 -38.32 5.83 22.73 0.13 -38.18 16 11 C 0.02 0.95 9.53 22.22 0.21 1.16 16 12 C -0.25 -9.91 10.05 22.46 0.23 -9.69 16 13 C -0.04 -1.48 10.02 22.22 0.22 -1.26 16 14 C -0.26 -12.18 7.00 22.73 0.16 -12.02 16 15 C 0.15 7.60 5.17 -21.29 -0.11 7.49 16 16 C -0.47 -25.77 8.19 23.46 0.19 -25.58 16 17 H 0.08 4.56 5.91 -2.91 -0.02 4.54 16 18 C 0.06 2.91 5.45 85.26 0.46 3.37 16 19 N -0.81 -42.66 13.92 21.83 0.30 -42.35 16 20 Si 0.96 41.88 24.40 68.60 1.67 43.55 16 21 H -0.24 -9.56 6.74 99.48 0.67 -8.89 16 22 H -0.25 -11.64 6.61 99.48 0.66 -10.98 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 N -0.35 -14.28 11.67 -54.54 -0.64 -14.91 16 25 N -0.37 -10.79 4.01 -356.07 -1.43 -12.22 16 26 C 0.09 1.68 10.95 127.77 1.40 3.08 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.97 7.61 -2.39 -0.02 0.95 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 33 H 0.44 16.69 8.68 -96.75 -0.84 15.85 16 34 H 0.12 5.17 7.33 -2.91 -0.02 5.15 16 35 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 36 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.11 4.92 4.34 -2.91 -0.01 4.90 16 38 H 0.30 14.05 8.30 -92.71 -0.77 13.28 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.12 1.22 7.80 -2.39 -0.02 1.20 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.66 352.82 0.63 -76.03 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: 0.15 Total: 34.82 kcal Atomic # 6 Polarization: -71.68 SS G_CDS: 5.31 Total: -66.37 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -2.04 Total: -112.91 kcal Atomic # 8 Polarization: -102.64 SS G_CDS: -4.20 Total: -106.84 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.67 Total: 43.55 kcal Atomic # 16 Polarization: 131.99 SS G_CDS: -0.27 Total: 131.72 kcal Total: -76.66 0.63 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817354279.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.178 kcal (2) G-P(sol) polarization free energy of solvation -76.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds