Wall clock time and date at job start Tue Mar 31 2020 18:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50704 * 109.47123 * 2 1 4 4 C 1.35260 * 126.06456 * 85.35062 * 3 2 1 5 5 C 1.40422 * 107.85830 * 180.13861 * 4 3 2 6 6 N 1.39993 * 125.97334 * 179.82957 * 5 4 3 7 7 S 1.65598 * 119.99859 * 179.71148 * 6 5 4 8 8 O 1.42100 * 106.39857 * 178.53748 * 7 6 5 9 9 O 1.42101 * 106.40290 * 311.45497 * 7 6 5 10 10 C 1.76197 * 107.21687 * 64.99920 * 7 6 5 11 11 C 1.38659 * 119.87515 * 269.72114 * 10 7 6 12 12 C 1.38611 * 120.50113 * 179.72214 * 11 10 7 13 13 C 1.37644 * 120.24724 * 0.55889 * 12 11 10 14 14 C 1.40698 * 119.74503 * 359.72057 * 13 12 11 15 15 C 1.41396 * 120.24383 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99459 * 150.21842 * 15 14 13 17 17 C 1.39941 * 120.00349 * 330.22486 * 15 14 13 18 18 N 1.30815 * 120.00552 * 161.72350 * 17 15 14 19 19 Si 1.86802 * 119.99695 * 341.72432 * 17 15 14 20 20 H 1.48494 * 109.47289 * 95.41281 * 19 17 15 21 21 H 1.48502 * 109.46961 * 215.41131 * 19 17 15 22 22 H 1.48500 * 109.47139 * 335.41147 * 19 17 15 23 23 C 1.37597 * 119.87691 * 90.00281 * 10 7 6 24 24 N 1.31215 * 108.05073 * 359.55834 * 5 4 3 25 25 N 1.34952 * 126.07067 * 265.00048 * 3 2 1 26 26 C 1.46494 * 125.97376 * 0.02562 * 25 3 2 27 27 H 1.08999 * 109.47076 * 59.99474 * 1 2 3 28 28 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46482 * 299.99694 * 1 2 3 30 30 H 1.09005 * 109.46972 * 240.00493 * 2 1 3 31 31 H 1.09000 * 109.47568 * 120.00342 * 2 1 3 32 32 H 1.08005 * 126.06819 * 359.97438 * 4 3 2 33 33 H 0.97002 * 120.00039 * 359.70745 * 6 5 4 34 34 H 1.07997 * 119.74672 * 0.02562 * 11 10 7 35 35 H 1.07997 * 119.88031 * 180.25835 * 12 11 10 36 36 H 1.08002 * 120.12644 * 179.74698 * 13 12 11 37 37 H 0.96995 * 120.00755 * 179.97438 * 18 17 15 38 38 H 1.08000 * 120.12881 * 359.96816 * 23 10 7 39 39 H 1.09005 * 109.47066 * 269.96903 * 26 25 3 40 40 H 1.09000 * 109.47198 * 29.96945 * 26 25 3 41 41 H 1.09000 * 109.47500 * 149.97435 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2142 2.2011 1.0898 5 6 2.6894 3.4480 0.6522 6 7 3.0010 4.5418 1.4685 7 16 3.5600 5.9465 0.7927 8 8 3.7474 6.8605 1.8645 9 8 4.5989 5.5753 -0.1028 10 6 2.2591 6.6021 -0.1985 11 6 2.1622 6.2454 -1.5349 12 6 1.1408 6.7489 -2.3252 13 6 0.2169 7.6192 -1.7927 14 6 0.3088 7.9927 -0.4393 15 6 -0.6349 8.8856 0.1188 16 1 -0.8883 8.8180 1.1665 17 6 -1.2406 9.8567 -0.6864 18 7 -2.3454 10.4365 -0.2930 19 14 -0.4716 10.3253 -2.3230 20 1 -1.1115 9.5446 -3.4122 21 1 -0.6750 11.7757 -2.5683 22 1 0.9829 10.0281 -2.2896 23 6 1.3467 7.4707 0.3550 24 7 2.7958 3.4066 -0.6549 25 7 2.3869 2.1383 -1.0867 26 6 2.3503 1.6722 -2.4750 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0249 1.9166 2.1143 33 1 2.8894 4.4769 2.4299 34 1 2.8851 5.5662 -1.9621 35 1 1.0723 6.4610 -3.3638 36 1 -0.5758 8.0135 -2.4112 37 1 -2.7651 11.1099 -0.8509 38 1 1.4264 7.7504 1.3951 39 1 3.3066 1.2155 -2.7302 40 1 1.5541 0.9368 -2.5906 41 1 2.1632 2.5175 -3.1373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817355088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:44 Heat of formation + Delta-G solvation = -2.441880 kcal Electronic energy + Delta-G solvation = -26747.411440 eV Core-core repulsion = 22947.771594 eV Total energy + Delta-G solvation = -3799.639845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29170 -39.71617 -38.42795 -37.07984 -36.82913 -35.65089 -34.53536 -32.91909 -32.56045 -31.94151 -29.97456 -27.25110 -27.07267 -24.62613 -24.13929 -22.73088 -22.42035 -21.45489 -20.32805 -19.43120 -18.78005 -18.15887 -17.88311 -17.13250 -16.95587 -16.67615 -16.48884 -16.27328 -15.61870 -15.27529 -14.93383 -14.81635 -14.70541 -14.21641 -14.12574 -14.05663 -13.71863 -13.53437 -13.42425 -13.30735 -13.28611 -13.25248 -13.16447 -12.90218 -12.57302 -12.35669 -12.26986 -12.00469 -11.91027 -11.80088 -11.55502 -11.40230 -11.05990 -10.05369 -9.80032 -9.67966 -9.28145 -8.97728 -6.60283 -0.77936 0.13738 0.63663 0.92034 1.18985 1.33379 1.36913 1.42055 1.78087 2.01535 2.06292 2.37536 2.63233 3.25714 3.30931 3.49828 3.66057 4.12188 4.16473 4.26536 4.31233 4.43304 4.43924 4.51653 4.56300 4.70868 4.71289 4.74306 4.81670 4.85651 4.88919 5.04438 5.11052 5.22371 5.31092 5.43387 5.43973 5.55561 5.61420 5.72767 5.88265 5.96544 6.19786 6.21608 6.55969 6.68383 6.71989 8.10692 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.003992 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.794901 B = 7012.101833 C = 7829.222086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C 0.112 3.888 4 C -0.298 4.298 5 C 0.294 3.706 6 N -1.006 6.006 7 S 2.712 3.288 8 O -0.978 6.978 9 O -0.963 6.963 10 C -0.631 4.631 11 C -0.115 4.115 12 C -0.102 4.102 13 C -0.197 4.197 14 C 0.054 3.946 15 C -0.485 4.485 16 H 0.062 0.938 17 C 0.052 3.948 18 N -0.841 5.841 19 Si 0.954 3.046 20 H -0.248 1.248 21 H -0.272 1.272 22 H -0.258 1.258 23 C -0.124 4.124 24 N -0.353 5.353 25 N -0.364 5.364 26 C 0.090 3.910 27 H 0.046 0.954 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.109 0.891 32 H 0.173 0.827 33 H 0.447 0.553 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.111 0.889 37 H 0.296 0.704 38 H 0.117 0.883 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 -22.538 -3.077 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.017 4.017 4 C -0.330 4.330 5 C 0.037 3.963 6 N -0.762 5.762 7 S 2.806 3.194 8 O -0.969 6.969 9 O -0.953 6.953 10 C -0.721 4.721 11 C -0.135 4.135 12 C -0.121 4.121 13 C -0.216 4.216 14 C 0.050 3.950 15 C -0.514 4.514 16 H 0.080 0.920 17 C -0.164 4.164 18 N -0.467 5.467 19 Si 0.776 3.224 20 H -0.173 1.173 21 H -0.198 1.198 22 H -0.182 1.182 23 C -0.145 4.145 24 N -0.182 5.182 25 N -0.147 5.147 26 C -0.050 4.050 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.190 0.810 33 H 0.287 0.713 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.135 0.865 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.475 -21.329 -4.247 22.691 hybrid contribution -1.066 0.673 0.685 1.435 sum 5.409 -20.656 -3.563 21.647 Atomic orbital electron populations 1.21746 0.93541 1.03243 1.01932 1.20409 0.96570 0.86473 1.05988 1.21644 0.97287 0.96906 0.85867 1.21173 1.18145 0.92247 1.01450 1.18947 0.98398 0.89140 0.89825 1.52553 1.80901 1.25099 1.17664 1.01171 0.73662 0.71823 0.72775 1.93553 1.85794 1.61974 1.55530 1.93530 1.53365 1.82489 1.65903 1.30155 1.19664 1.12948 1.09333 1.20555 0.99712 1.01588 0.91672 1.21120 0.94303 0.96669 0.99964 1.21500 1.01642 1.02267 0.96222 1.17909 0.91438 0.92945 0.92693 1.19448 1.19577 1.14540 0.97840 0.91954 1.26740 0.92963 0.94385 1.02281 1.69689 1.14670 1.22113 1.40201 0.85665 0.80909 0.77783 0.78015 1.17284 1.19763 1.18162 1.20920 0.94141 0.99571 0.99848 1.77480 1.28848 1.02354 1.09551 1.48343 1.50671 1.07698 1.08031 1.22235 1.05126 1.01580 0.76015 0.93475 0.89564 0.92986 0.88264 0.87226 0.81001 0.71340 0.84609 0.84183 0.87162 0.89296 0.86495 0.89037 0.86282 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.06 -0.55 6.03 29.85 0.18 -0.37 16 3 C 0.11 2.24 6.18 41.39 0.26 2.49 16 4 C -0.30 -7.06 10.74 22.11 0.24 -6.82 16 5 C 0.29 9.17 7.72 133.39 1.03 10.20 16 6 N -1.01 -30.94 5.91 -54.61 -0.32 -31.26 16 7 S 2.71 104.65 5.49 -56.49 -0.31 104.34 16 8 O -0.98 -40.96 17.27 -128.00 -2.21 -43.17 16 9 O -0.96 -40.32 16.47 -128.00 -2.11 -42.43 16 10 C -0.63 -27.83 5.90 22.22 0.13 -27.69 16 11 C -0.11 -4.84 8.71 22.46 0.20 -4.65 16 12 C -0.10 -4.25 10.02 22.22 0.22 -4.02 16 13 C -0.20 -9.33 7.18 22.73 0.16 -9.17 16 14 C 0.05 2.80 5.11 -21.29 -0.11 2.70 16 15 C -0.48 -27.44 9.57 23.46 0.22 -27.22 16 16 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 17 C 0.05 2.78 5.40 85.26 0.46 3.24 16 18 N -0.84 -45.70 13.93 21.82 0.30 -45.39 16 19 Si 0.95 42.22 24.52 68.60 1.68 43.90 16 20 H -0.25 -10.06 6.71 99.48 0.67 -9.39 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.26 -11.91 6.86 99.48 0.68 -11.23 16 23 C -0.12 -6.08 9.26 22.73 0.21 -5.87 16 24 N -0.35 -11.64 10.05 -54.55 -0.55 -12.19 16 25 N -0.36 -8.70 4.01 -356.08 -1.43 -10.12 16 26 C 0.09 1.30 11.05 127.77 1.41 2.71 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.56 7.48 -2.38 -0.02 0.54 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.45 10.39 8.96 -96.74 -0.87 9.53 16 34 H 0.14 5.37 6.86 -2.91 -0.02 5.35 16 35 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 36 H 0.11 5.05 4.73 -2.91 -0.01 5.04 16 37 H 0.30 14.37 8.30 -92.71 -0.77 13.61 16 38 H 0.12 5.61 7.60 -2.91 -0.02 5.58 16 39 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.12 0.88 7.53 -2.39 -0.02 0.86 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -76.59 355.58 0.53 -76.06 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.14 Total: 25.53 kcal Atomic # 6 Polarization: -70.58 SS G_CDS: 5.33 Total: -65.26 kcal Atomic # 7 Polarization: -96.98 SS G_CDS: -2.00 Total: -98.97 kcal Atomic # 8 Polarization: -81.28 SS G_CDS: -4.32 Total: -85.60 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.68 Total: 43.90 kcal Atomic # 16 Polarization: 104.65 SS G_CDS: -0.31 Total: 104.34 kcal Total: -76.59 0.53 -76.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817355088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.623 kcal (2) G-P(sol) polarization free energy of solvation -76.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds