Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46491 * 109.46987 * 142.91088 * 3 2 1 5 5 C 1.37098 * 120.00187 * 269.53241 * 4 3 2 6 6 H 1.08007 * 120.00147 * 191.66198 * 5 4 3 7 7 C 1.38949 * 119.99809 * 11.38105 * 5 4 3 8 8 N 1.31415 * 119.99957 * 18.81694 * 7 5 4 9 9 Si 1.86800 * 120.00173 * 198.80660 * 7 5 4 10 10 H 1.48507 * 109.46965 * 60.00304 * 9 7 5 11 11 H 1.48503 * 109.47236 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47243 * 300.00484 * 9 7 5 13 13 C 1.34781 * 120.00037 * 89.53486 * 4 3 2 14 14 O 1.21291 * 119.99909 * 3.11277 * 13 4 3 15 15 C 1.50698 * 119.99754 * 183.11686 * 13 4 3 16 16 H 1.09001 * 109.47482 * 47.23887 * 15 13 4 17 17 C 1.53001 * 109.47220 * 287.23619 * 15 13 4 18 18 O 1.42897 * 109.47533 * 303.98495 * 17 15 13 19 19 N 1.46503 * 109.46772 * 167.24151 * 15 13 4 20 20 C 1.34778 * 119.99803 * 204.99669 * 19 15 13 21 21 O 1.21521 * 120.00257 * 0.02562 * 20 19 15 22 22 C 1.48161 * 120.00056 * 179.97438 * 20 19 15 23 23 C 1.39235 * 119.70852 * 179.72866 * 22 20 19 24 24 C 1.38664 * 119.11595 * 179.75413 * 23 22 20 25 25 C 1.38494 * 118.52563 * 0.51388 * 24 23 22 26 26 C 1.38890 * 119.33031 * 359.72625 * 25 24 23 27 27 F 1.35105 * 119.58431 * 180.02562 * 26 25 24 28 28 N 1.31711 * 120.84096 * 0.02562 * 26 25 24 29 29 H 4.40638 * 5.51373 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47164 * 22.91046 * 3 2 1 31 31 H 1.09004 * 109.46982 * 262.91052 * 3 2 1 32 32 H 0.97000 * 119.99802 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46718 * 63.98653 * 17 15 13 34 34 H 1.09000 * 109.47445 * 183.97888 * 17 15 13 35 35 H 0.96697 * 114.00664 * 180.02562 * 18 17 15 36 36 H 0.96991 * 120.00176 * 25.00013 * 19 15 13 37 37 H 1.07998 * 120.43812 * 359.97438 * 23 22 20 38 38 H 1.07996 * 120.73261 * 180.21917 * 24 23 22 39 39 H 1.07996 * 120.33797 * 179.75268 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1026 -0.8329 5 6 3.3715 0.8997 -2.1678 6 1 3.9039 1.6445 -2.7408 7 6 2.9326 -0.2667 -2.7822 8 7 1.9942 -0.9934 -2.2181 9 14 3.6762 -0.8017 -4.4101 10 1 5.1365 -1.0126 -4.2418 11 1 3.0403 -2.0688 -4.8522 12 1 3.4426 0.2513 -5.4309 13 6 3.3489 2.3160 -0.2869 14 8 3.1929 2.4811 0.9045 15 6 3.7832 3.4673 -1.1568 16 1 3.1531 3.5094 -2.0452 17 6 5.2416 3.2689 -1.5749 18 8 6.0553 3.1210 -0.4096 19 7 3.6561 4.7201 -0.4080 20 6 3.4909 5.8847 -1.0660 21 8 3.4470 5.8955 -2.2804 22 6 3.3617 7.1516 -0.3088 23 6 3.1970 8.3519 -0.9949 24 6 3.0722 9.5296 -0.2738 25 6 3.1273 9.4677 1.1087 26 6 3.2988 8.2365 1.7282 27 9 3.3527 8.1701 3.0766 28 7 3.4096 7.1328 1.0180 29 1 -1.0502 -0.0002 0.0004 30 1 3.0098 -0.9458 -0.4001 31 1 3.0093 0.1277 1.0199 32 1 1.6880 -1.8079 -2.6468 33 1 5.3241 2.3740 -2.1917 34 1 5.5773 4.1352 -2.1449 35 1 6.9946 2.9915 -0.5995 36 1 3.6908 4.7114 0.5613 37 1 3.1633 8.3649 -2.0743 38 1 2.9398 10.4748 -0.7792 39 1 3.0373 10.3675 1.6990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846067680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = -37.434230 kcal Electronic energy + Delta-G solvation = -28634.135701 eV Core-core repulsion = 24266.765298 eV Total energy + Delta-G solvation = -4367.370404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.18917 -40.71885 -39.46558 -38.30654 -36.32652 -35.28253 -34.02168 -33.01276 -31.89843 -31.57758 -31.27527 -29.18539 -26.37792 -25.14648 -24.90627 -23.69382 -22.72617 -20.63876 -19.37666 -18.73496 -18.02948 -17.83352 -17.09820 -16.79064 -16.43596 -16.32549 -16.09073 -15.62337 -15.34592 -14.99041 -14.51130 -14.34746 -14.18015 -14.06652 -13.91194 -13.59435 -13.39987 -13.07586 -12.84097 -12.54022 -12.51969 -12.02178 -11.71483 -11.47622 -11.26814 -11.08098 -10.68534 -10.54067 -10.51348 -10.40388 -9.77919 -9.60019 -9.38307 -9.34042 -9.32401 -8.84811 -8.69187 -8.39318 -8.02546 -6.44516 -4.02528 0.28887 0.76658 2.62493 2.99849 3.06373 3.15326 3.15916 3.32901 3.57811 3.70931 3.87539 4.08710 4.11103 4.29957 4.52239 4.59125 4.66262 4.67573 4.85798 4.96337 5.06124 5.41966 5.49346 5.59495 5.66755 5.71018 5.73500 5.98535 6.07541 6.16276 6.23506 6.61784 6.72368 6.94067 7.17049 7.19089 7.27571 7.54077 7.84223 8.01058 8.20869 8.35976 8.92599 9.00171 9.32029 9.72373 10.52059 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.003350 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.839756 B = 8355.414076 C = 9050.645168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.094 4.094 3 C 0.241 3.759 4 N -0.431 5.431 5 C -0.353 4.353 6 H 0.105 0.895 7 C 0.041 3.959 8 N -0.849 5.849 9 Si 0.919 3.081 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.465 3.535 14 O -0.592 6.592 15 C 0.143 3.857 16 H 0.122 0.878 17 C 0.066 3.934 18 O -0.560 6.560 19 N -0.672 5.672 20 C 0.566 3.434 21 O -0.537 6.537 22 C 0.127 3.873 23 C -0.125 4.125 24 C -0.054 4.054 25 C -0.177 4.177 26 C 0.309 3.691 27 F -0.109 7.109 28 N -0.484 5.484 29 H 0.197 0.803 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.272 0.728 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.371 0.629 36 H 0.422 0.578 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 15.455 0.982 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.095 4.095 3 C 0.119 3.881 4 N -0.148 5.148 5 C -0.480 4.480 6 H 0.123 0.877 7 C -0.166 4.166 8 N -0.485 5.485 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.252 3.748 14 O -0.478 6.478 15 C 0.035 3.965 16 H 0.139 0.861 17 C -0.013 4.013 18 O -0.364 6.364 19 N -0.323 5.323 20 C 0.349 3.651 21 O -0.415 6.415 22 C -0.011 4.011 23 C -0.146 4.146 24 C -0.079 4.079 25 C -0.198 4.198 26 C 0.153 3.847 27 F -0.088 7.088 28 N -0.201 5.201 29 H 0.214 0.786 30 H 0.129 0.871 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.217 0.783 36 H 0.261 0.739 37 H 0.177 0.823 38 H 0.171 0.829 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.607 14.526 1.431 15.035 hybrid contribution 0.366 0.269 -0.963 1.065 sum 3.974 14.795 0.468 15.326 Atomic orbital electron populations 1.24174 0.95310 1.03775 1.06438 1.23108 0.94288 0.97131 0.95017 1.18181 0.84156 0.92131 0.93620 1.43566 1.55579 1.06822 1.08840 1.19729 1.37279 1.06254 0.84722 0.87713 1.25274 0.94767 0.96942 0.99598 1.70102 1.23199 1.15629 1.39617 0.86114 0.79412 0.78448 0.81505 1.19671 1.20760 1.19621 1.19586 0.83499 0.83593 0.88081 1.90545 1.58571 1.83084 1.15570 1.20790 0.96187 0.83328 0.96168 0.86082 1.22644 0.89835 1.00975 0.87808 1.86595 1.21642 1.96050 1.32131 1.45610 1.69407 1.04834 1.12480 1.17730 0.77788 0.82890 0.86676 1.90791 1.51846 1.86372 1.12442 1.20991 0.97850 0.94844 0.87455 1.22215 0.98000 0.91356 1.03039 1.21526 0.94508 0.99167 0.92715 1.22047 1.03615 0.97786 0.96363 1.18082 0.98040 0.89722 0.78892 1.91663 1.93173 1.96854 1.27063 1.66905 1.13672 1.31301 1.08265 0.78611 0.87060 0.91331 0.91676 0.90251 0.93444 0.78301 0.73899 0.82350 0.82862 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.40 19.25 29.55 0.57 -5.83 16 2 C -0.09 -2.34 11.44 -37.12 -0.42 -2.76 16 3 C 0.24 5.89 5.19 -6.83 -0.04 5.86 16 4 N -0.43 -10.64 2.59 -117.93 -0.30 -10.95 16 5 C -0.35 -8.50 8.55 -14.93 -0.13 -8.63 16 6 H 0.11 2.34 4.70 -52.48 -0.25 2.09 16 7 C 0.04 0.98 5.02 -17.47 -0.09 0.89 16 8 N -0.85 -21.27 8.89 55.50 0.49 -20.78 16 9 Si 0.92 18.54 29.59 -169.99 -5.03 13.51 16 10 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 12 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 13 C 0.47 11.28 6.52 -10.98 -0.07 11.21 16 14 O -0.59 -15.67 15.41 5.55 0.09 -15.59 16 15 C 0.14 2.98 1.93 -69.08 -0.13 2.85 16 16 H 0.12 2.61 6.96 -51.93 -0.36 2.25 16 17 C 0.07 1.19 6.51 37.16 0.24 1.43 16 18 O -0.56 -9.88 13.10 -35.23 -0.46 -10.34 16 19 N -0.67 -13.12 4.94 -55.78 -0.28 -13.39 16 20 C 0.57 10.04 7.78 -12.18 -0.09 9.95 16 21 O -0.54 -10.21 15.98 5.35 0.09 -10.12 16 22 C 0.13 1.87 6.75 -83.01 -0.56 1.31 16 23 C -0.13 -1.36 9.63 -39.05 -0.38 -1.73 16 24 C -0.05 -0.41 10.16 -39.33 -0.40 -0.81 16 25 C -0.18 -1.50 10.09 -39.25 -0.40 -1.89 16 26 C 0.31 3.85 8.41 -17.36 -0.15 3.70 16 27 F -0.11 -1.39 17.29 2.25 0.04 -1.35 16 28 N -0.48 -7.39 9.56 -10.13 -0.10 -7.48 16 29 H 0.20 3.71 7.80 -54.08 -0.42 3.29 16 30 H 0.11 2.72 6.27 -51.93 -0.33 2.39 16 31 H 0.07 1.64 7.39 -51.93 -0.38 1.25 16 32 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 33 H 0.08 1.41 5.74 -51.93 -0.30 1.11 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.37 4.54 9.12 45.56 0.42 4.96 16 36 H 0.42 8.66 7.04 -40.82 -0.29 8.38 16 37 H 0.16 1.55 7.64 -52.49 -0.40 1.15 16 38 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -32.13 351.11 -4.93 -37.06 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -2.71 Total: 18.60 kcal Atomic # 6 Polarization: 17.58 SS G_CDS: -2.04 Total: 15.54 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.18 Total: -52.60 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.29 Total: -36.05 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.13 -4.93 -37.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846067680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.378 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds