Wall clock time and date at job start Tue Mar 31 2020 18:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46491 * 109.46987 * 142.91088 * 3 2 1 5 5 C 1.37098 * 120.00187 * 269.53241 * 4 3 2 6 6 H 1.08007 * 120.00147 * 191.66198 * 5 4 3 7 7 C 1.38949 * 119.99809 * 11.38105 * 5 4 3 8 8 N 1.31415 * 119.99957 * 18.81694 * 7 5 4 9 9 Si 1.86800 * 120.00173 * 198.80660 * 7 5 4 10 10 H 1.48507 * 109.46965 * 60.00304 * 9 7 5 11 11 H 1.48503 * 109.47236 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47243 * 300.00484 * 9 7 5 13 13 C 1.34781 * 120.00037 * 89.53486 * 4 3 2 14 14 O 1.21291 * 119.99909 * 3.11277 * 13 4 3 15 15 C 1.50698 * 119.99754 * 183.11686 * 13 4 3 16 16 H 1.09001 * 109.47482 * 47.23887 * 15 13 4 17 17 C 1.53001 * 109.47220 * 287.23619 * 15 13 4 18 18 O 1.42897 * 109.47533 * 303.98495 * 17 15 13 19 19 N 1.46503 * 109.46772 * 167.24151 * 15 13 4 20 20 C 1.34778 * 119.99803 * 204.99669 * 19 15 13 21 21 O 1.21521 * 120.00257 * 0.02562 * 20 19 15 22 22 C 1.48161 * 120.00056 * 179.97438 * 20 19 15 23 23 C 1.39235 * 119.70852 * 179.72866 * 22 20 19 24 24 C 1.38664 * 119.11595 * 179.75413 * 23 22 20 25 25 C 1.38494 * 118.52563 * 0.51388 * 24 23 22 26 26 C 1.38890 * 119.33031 * 359.72625 * 25 24 23 27 27 F 1.35105 * 119.58431 * 180.02562 * 26 25 24 28 28 N 1.31711 * 120.84096 * 0.02562 * 26 25 24 29 29 H 4.40638 * 5.51373 * 180.02562 * 4 1 2 30 30 H 1.09005 * 109.47164 * 22.91046 * 3 2 1 31 31 H 1.09004 * 109.46982 * 262.91052 * 3 2 1 32 32 H 0.97000 * 119.99802 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46718 * 63.98653 * 17 15 13 34 34 H 1.09000 * 109.47445 * 183.97888 * 17 15 13 35 35 H 0.96697 * 114.00664 * 180.02562 * 18 17 15 36 36 H 0.96991 * 120.00176 * 25.00013 * 19 15 13 37 37 H 1.07998 * 120.43812 * 359.97438 * 23 22 20 38 38 H 1.07996 * 120.73261 * 180.21917 * 24 23 22 39 39 H 1.07996 * 120.33797 * 179.75268 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.1026 -0.8329 5 6 3.3715 0.8997 -2.1678 6 1 3.9039 1.6445 -2.7408 7 6 2.9326 -0.2667 -2.7822 8 7 1.9942 -0.9934 -2.2181 9 14 3.6762 -0.8017 -4.4101 10 1 5.1365 -1.0126 -4.2418 11 1 3.0403 -2.0688 -4.8522 12 1 3.4426 0.2513 -5.4309 13 6 3.3489 2.3160 -0.2869 14 8 3.1929 2.4811 0.9045 15 6 3.7832 3.4673 -1.1568 16 1 3.1531 3.5094 -2.0452 17 6 5.2416 3.2689 -1.5749 18 8 6.0553 3.1210 -0.4096 19 7 3.6561 4.7201 -0.4080 20 6 3.4909 5.8847 -1.0660 21 8 3.4470 5.8955 -2.2804 22 6 3.3617 7.1516 -0.3088 23 6 3.1970 8.3519 -0.9949 24 6 3.0722 9.5296 -0.2738 25 6 3.1273 9.4677 1.1087 26 6 3.2988 8.2365 1.7282 27 9 3.3527 8.1701 3.0766 28 7 3.4096 7.1328 1.0180 29 1 -1.0502 -0.0002 0.0004 30 1 3.0098 -0.9458 -0.4001 31 1 3.0093 0.1277 1.0199 32 1 1.6880 -1.8079 -2.6468 33 1 5.3241 2.3740 -2.1917 34 1 5.5773 4.1352 -2.1449 35 1 6.9946 2.9915 -0.5995 36 1 3.6908 4.7114 0.5613 37 1 3.1633 8.3649 -2.0743 38 1 2.9398 10.4748 -0.7792 39 1 3.0373 10.3675 1.6990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846067680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:40 Heat of formation + Delta-G solvation = -62.576588 kcal Electronic energy + Delta-G solvation = -28635.225956 eV Core-core repulsion = 24266.765298 eV Total energy + Delta-G solvation = -4368.460658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.10132 -41.86623 -40.96600 -39.78018 -37.81359 -37.13524 -35.49003 -33.96732 -33.73841 -33.37708 -32.29126 -30.68671 -28.19277 -26.77085 -26.18666 -24.60298 -24.13368 -21.97098 -21.08914 -20.22653 -19.64214 -18.87028 -18.51847 -18.39977 -17.57696 -17.28284 -17.19900 -17.09229 -16.83543 -16.44048 -16.12194 -16.06706 -15.81179 -15.48220 -15.00820 -14.83264 -14.60031 -14.35006 -14.22093 -14.01499 -13.90035 -13.46251 -13.29269 -13.23219 -12.87270 -12.70938 -12.41046 -12.14559 -11.78146 -11.31683 -11.24147 -11.18590 -11.01452 -10.81260 -10.61335 -10.46800 -10.24812 -10.07514 -9.92350 -8.28203 -5.93008 -0.60452 -0.02800 1.39919 1.49690 1.50108 1.58671 1.69840 1.92438 2.08716 2.32886 2.34782 2.40707 2.57859 3.01964 3.10069 3.23175 3.34898 3.63963 3.79060 3.90109 3.94033 4.03085 4.11519 4.25194 4.43750 4.54316 4.57141 4.63413 4.75985 4.85972 4.95437 4.98405 5.17333 5.37721 5.44171 5.46353 5.67143 6.15428 6.33007 6.48824 6.88382 6.93755 7.04899 7.11809 7.44231 7.84342 8.68272 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.003350 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.839756 B = 8355.414076 C = 9050.645168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.141 4.141 3 C 0.243 3.757 4 N -0.436 5.436 5 C -0.371 4.371 6 H 0.119 0.881 7 C 0.002 3.998 8 N -0.874 5.874 9 Si 0.987 3.013 10 H -0.261 1.261 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.453 3.547 14 O -0.625 6.625 15 C 0.147 3.853 16 H 0.109 0.891 17 C 0.078 3.922 18 O -0.578 6.578 19 N -0.681 5.681 20 C 0.565 3.435 21 O -0.556 6.556 22 C 0.092 3.908 23 C -0.115 4.115 24 C -0.033 4.033 25 C -0.147 4.147 26 C 0.282 3.718 27 F -0.119 7.119 28 N -0.526 5.526 29 H 0.234 0.766 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.272 0.728 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.415 0.585 37 H 0.169 0.831 38 H 0.207 0.793 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.434 18.184 -0.443 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.142 4.142 3 C 0.121 3.879 4 N -0.153 5.153 5 C -0.498 4.498 6 H 0.137 0.863 7 C -0.202 4.202 8 N -0.510 5.510 9 Si 0.811 3.189 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.242 3.758 14 O -0.513 6.513 15 C 0.039 3.961 16 H 0.127 0.873 17 C -0.001 4.001 18 O -0.386 6.386 19 N -0.332 5.332 20 C 0.350 3.650 21 O -0.435 6.435 22 C -0.045 4.045 23 C -0.136 4.136 24 C -0.058 4.058 25 C -0.168 4.168 26 C 0.126 3.874 27 F -0.098 7.098 28 N -0.244 5.244 29 H 0.251 0.749 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.252 0.748 37 H 0.187 0.813 38 H 0.224 0.776 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.786 17.261 -0.010 17.672 hybrid contribution 0.250 -0.506 -0.446 0.719 sum 4.036 16.756 -0.455 17.241 Atomic orbital electron populations 1.25095 0.96335 1.01957 1.04612 1.23475 0.95098 0.98886 0.96757 1.18077 0.84580 0.92018 0.93247 1.43776 1.55223 1.07020 1.09277 1.20163 1.37828 1.07115 0.84649 0.86342 1.26130 0.94690 0.96569 1.02842 1.70228 1.24025 1.15751 1.41001 0.85073 0.78886 0.77655 0.77331 1.18588 1.21094 1.19094 1.20183 0.83183 0.84259 0.88156 1.90502 1.59993 1.83724 1.17045 1.20651 0.97818 0.82781 0.94865 0.87310 1.22485 0.88258 1.01645 0.87734 1.86546 1.23590 1.96112 1.32370 1.45645 1.70494 1.05072 1.11966 1.18261 0.76498 0.83444 0.86760 1.90751 1.52723 1.86883 1.13189 1.20614 1.01973 0.94439 0.87500 1.22473 0.96408 0.91041 1.03695 1.22113 0.91718 0.99782 0.92160 1.22532 0.99925 0.97286 0.97038 1.18537 0.99628 0.90673 0.78608 1.91635 1.93463 1.96949 1.27785 1.66621 1.15096 1.33688 1.08946 0.74928 0.87650 0.92033 0.91789 0.90145 0.91724 0.75601 0.74757 0.81330 0.77560 0.78773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.01 19.25 74.32 1.43 -10.58 16 2 C -0.14 -7.18 11.44 31.13 0.36 -6.83 16 3 C 0.24 12.40 5.19 84.58 0.44 12.84 16 4 N -0.44 -22.31 2.59 -645.41 -1.67 -23.98 16 5 C -0.37 -18.14 8.55 84.04 0.72 -17.42 16 6 H 0.12 5.32 4.70 -2.91 -0.01 5.30 16 7 C 0.00 0.09 5.02 84.93 0.43 0.51 16 8 N -0.87 -44.26 8.89 21.66 0.19 -44.06 16 9 Si 0.99 37.66 29.59 68.60 2.03 39.69 16 10 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 11 H -0.29 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 13 C 0.45 22.93 6.52 87.66 0.57 23.50 16 14 O -0.62 -34.78 15.41 -3.06 -0.05 -34.83 16 15 C 0.15 6.34 1.93 44.24 0.09 6.42 16 16 H 0.11 4.88 6.96 -2.39 -0.02 4.87 16 17 C 0.08 2.81 6.51 71.98 0.47 3.28 16 18 O -0.58 -20.58 13.10 -148.98 -1.95 -22.53 16 19 N -0.68 -27.78 4.94 -448.66 -2.22 -30.00 16 20 C 0.56 20.59 7.78 86.88 0.68 21.27 16 21 O -0.56 -21.42 15.98 -3.78 -0.06 -21.48 16 22 C 0.09 2.69 6.75 41.88 0.28 2.97 16 23 C -0.12 -2.23 9.63 22.61 0.22 -2.01 16 24 C -0.03 -0.35 10.16 22.43 0.23 -0.12 16 25 C -0.15 -1.91 10.09 22.49 0.23 -1.68 16 26 C 0.28 6.73 8.41 84.87 0.71 7.45 16 27 F -0.12 -3.02 17.29 44.97 0.78 -2.24 16 28 N -0.53 -16.30 9.56 -185.97 -1.78 -18.08 16 29 H 0.23 8.40 7.80 -4.41 -0.03 8.37 16 30 H 0.11 5.39 6.27 -2.38 -0.01 5.38 16 31 H 0.06 3.13 7.39 -2.38 -0.02 3.11 16 32 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 33 H 0.08 2.85 5.74 -2.39 -0.01 2.84 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.39 9.43 9.12 -74.06 -0.68 8.76 16 36 H 0.41 18.10 7.04 -92.72 -0.65 17.45 16 37 H 0.17 2.87 7.64 -2.91 -0.02 2.85 16 38 H 0.21 0.08 8.06 -2.91 -0.02 0.05 16 39 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -73.76 351.11 1.94 -71.82 By element: Atomic # 1 Polarization: 46.26 SS G_CDS: -0.18 Total: 46.08 kcal Atomic # 6 Polarization: 32.77 SS G_CDS: 6.84 Total: 39.61 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -5.47 Total: -116.12 kcal Atomic # 8 Polarization: -76.78 SS G_CDS: -2.06 Total: -78.84 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -73.76 1.94 -71.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846067680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.242 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds