Wall clock time and date at job start Tue Mar 31 2020 18:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46907 * 2 1 4 4 C 1.35317 * 126.12631 * 84.99831 * 3 2 1 5 5 C 1.39868 * 107.92164 * 180.02562 * 4 3 2 6 6 C 1.50697 * 125.89979 * 179.74092 * 5 4 3 7 7 N 1.46494 * 109.47333 * 94.99740 * 6 5 4 8 8 S 1.65603 * 120.00205 * 165.96767 * 7 6 5 9 9 O 1.42102 * 106.40345 * 176.35735 * 8 7 6 10 10 O 1.42103 * 106.39706 * 309.27826 * 8 7 6 11 11 C 1.76198 * 107.21716 * 62.81562 * 8 7 6 12 12 C 1.37634 * 120.12764 * 245.80545 * 11 8 7 13 13 C 1.38621 * 120.24459 * 179.97438 * 12 11 8 14 14 C 1.38651 * 120.50254 * 0.02623 * 13 12 11 15 15 C 1.37591 * 120.24969 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12618 * 65.53563 * 11 8 7 17 17 C 1.41402 * 120.24219 * 359.97438 * 16 11 8 18 18 H 1.08000 * 119.99693 * 331.26757 * 17 16 11 19 19 C 1.39943 * 119.99849 * 151.26512 * 17 16 11 20 20 N 1.30828 * 119.99957 * 348.82961 * 19 17 16 21 21 Si 1.86801 * 119.99994 * 168.83025 * 19 17 16 22 22 H 1.48498 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47104 * 120.00161 * 21 19 17 24 24 H 1.48497 * 109.46745 * 240.00078 * 21 19 17 25 25 N 1.30837 * 108.19849 * 359.97438 * 5 4 3 26 26 N 1.34946 * 126.12490 * 265.04270 * 3 2 1 27 27 H 0.96995 * 126.04094 * 359.96038 * 26 3 2 28 28 H 1.08994 * 109.47360 * 299.99801 * 1 2 3 29 29 H 1.08995 * 109.47091 * 60.00594 * 1 2 3 30 30 H 1.09001 * 109.46727 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46845 * 239.99858 * 2 1 3 32 32 H 1.09000 * 109.47075 * 120.00336 * 2 1 3 33 33 H 1.08004 * 126.03738 * 0.02562 * 4 3 2 34 34 H 1.08999 * 109.47236 * 214.99656 * 6 5 4 35 35 H 1.09000 * 109.47300 * 334.99719 * 6 5 4 36 36 H 0.97005 * 119.99969 * 345.97041 * 7 6 5 37 37 H 1.08002 * 119.87887 * 0.02562 * 12 11 8 38 38 H 1.08001 * 119.74714 * 180.02562 * 13 12 11 39 39 H 1.08003 * 119.87140 * 180.02562 * 14 13 12 40 40 H 1.08001 * 120.12818 * 179.97438 * 15 14 13 41 41 H 0.96996 * 119.99706 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2084 2.2048 1.0888 5 6 2.6866 3.4450 0.6535 6 6 3.0155 4.6235 1.5331 7 7 4.4465 4.6147 1.8466 8 16 5.1598 5.9598 2.4978 9 8 6.5112 5.6091 2.7625 10 8 4.7886 7.0522 1.6681 11 6 4.4039 6.2449 4.0636 12 6 3.6441 7.3740 4.2686 13 6 3.0478 7.6004 5.4993 14 6 3.2093 6.6949 6.5368 15 6 3.9654 5.5599 6.3548 16 6 4.5700 5.3162 5.1075 17 6 5.3432 4.1495 4.9065 18 1 5.4205 3.7162 3.9202 19 6 6.0084 3.5565 5.9855 20 7 6.0989 4.1903 7.1264 21 14 6.7670 1.8599 5.7967 22 1 6.5273 1.3611 4.4187 23 1 8.2284 1.9405 6.0474 24 1 6.1476 0.9293 6.7742 25 7 2.7943 3.4067 -0.6499 26 7 2.3863 2.1395 -1.0859 27 1 2.3630 1.8327 -2.0058 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0140 1.9226 2.1131 34 1 2.7634 5.5472 1.0123 35 1 2.4407 4.5589 2.4571 36 1 4.9762 3.8208 1.6728 37 1 3.5112 8.0859 3.4673 38 1 2.4529 8.4889 5.6512 39 1 2.7398 6.8812 7.4914 40 1 4.0902 4.8561 7.1644 41 1 6.5602 3.7793 7.8742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866817734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:56 Heat of formation + Delta-G solvation = 4.947210 kcal Electronic energy + Delta-G solvation = -26605.253525 eV Core-core repulsion = 22805.934095 eV Total energy + Delta-G solvation = -3799.319430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29567 -37.56527 -36.19091 -35.32806 -34.77597 -33.98831 -33.82425 -31.08825 -30.18621 -29.52221 -29.08917 -26.00925 -25.47150 -24.00802 -21.62994 -21.11703 -20.46383 -20.03219 -18.56146 -17.67849 -17.45707 -16.76194 -16.15688 -15.60485 -15.31483 -14.85240 -14.59345 -14.34970 -14.16082 -14.05406 -13.42334 -13.37658 -13.21919 -13.05817 -12.74664 -12.63309 -12.53917 -11.89648 -11.74145 -11.51132 -11.42276 -11.25273 -11.14368 -11.13888 -11.00870 -10.96474 -10.67448 -10.54203 -10.45196 -9.87154 -9.44202 -9.41579 -9.40724 -8.75349 -8.62440 -8.00840 -7.57100 -7.00377 -4.73361 1.49588 1.85502 2.36113 2.73886 2.75307 2.80100 2.98564 3.05009 3.12499 3.79583 4.09222 4.37388 4.44259 4.60243 4.69854 4.82052 4.95530 5.14171 5.31790 5.37137 5.45396 5.57494 5.64496 5.69544 5.81832 5.86784 5.93101 6.07784 6.19057 6.27230 6.30563 6.44736 6.63632 6.80685 6.98691 7.11429 7.22927 7.33763 7.51697 7.56981 7.68674 7.71092 7.83894 7.92520 8.32204 8.53170 8.67736 9.92330 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010069 B = 0.004504 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.246188 B = 6215.296245 C = 7323.842958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C 0.081 3.919 4 C -0.250 4.250 5 C 0.078 3.922 6 C 0.206 3.794 7 N -1.116 6.116 8 S 2.701 3.299 9 O -0.963 6.963 10 O -0.996 6.996 11 C -0.775 4.775 12 C -0.003 4.003 13 C -0.250 4.250 14 C -0.077 4.077 15 C -0.158 4.158 16 C 0.187 3.813 17 C -0.443 4.443 18 H 0.088 0.912 19 C 0.080 3.920 20 N -0.777 5.777 21 Si 0.915 3.085 22 H -0.255 1.255 23 H -0.269 1.269 24 H -0.270 1.270 25 N -0.277 5.277 26 N -0.476 5.476 27 H 0.435 0.565 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.073 -9.881 -8.651 15.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 C -0.047 4.047 4 C -0.280 4.280 5 C -0.090 4.090 6 C 0.077 3.923 7 N -0.873 5.873 8 S 2.799 3.201 9 O -0.953 6.953 10 O -0.986 6.986 11 C -0.870 4.870 12 C -0.023 4.023 13 C -0.270 4.270 14 C -0.096 4.096 15 C -0.177 4.177 16 C 0.182 3.818 17 C -0.472 4.472 18 H 0.106 0.894 19 C -0.141 4.141 20 N -0.401 5.401 21 Si 0.739 3.261 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.195 1.195 25 N -0.101 5.101 26 N -0.185 5.185 27 H 0.278 0.722 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.170 0.830 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.143 0.857 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.071 -8.581 -9.843 15.351 hybrid contribution -0.109 -1.769 0.881 1.979 sum -8.180 -10.349 -8.962 15.948 Atomic orbital electron populations 1.21756 0.93931 1.02144 1.02711 1.20217 0.96539 0.89363 1.03933 1.21084 1.00268 0.95440 0.87893 1.21254 1.13202 0.93910 0.99632 1.22274 0.98926 0.96398 0.91433 1.19408 0.82054 0.94305 0.96498 1.55673 1.16879 1.33688 1.81087 1.01088 0.73427 0.71684 0.73928 1.93547 1.32900 1.82982 1.85869 1.93452 1.84721 1.52487 1.67976 1.29863 1.28840 1.07188 1.21128 1.20267 0.91957 0.93731 0.96337 1.20493 1.09661 1.01900 0.94970 1.20903 0.97149 0.94801 0.96723 1.21520 0.99145 0.98309 0.98765 1.17009 0.85887 0.88880 0.90042 1.19898 1.23265 1.07679 0.96343 0.89375 1.25943 0.94568 0.99439 0.94105 1.69788 1.30858 1.36615 1.02789 0.86123 0.79374 0.80508 0.80141 1.17778 1.19382 1.19509 1.77379 1.21622 0.98241 1.12870 1.46321 1.53243 1.10450 1.08482 0.72186 0.91689 0.92775 0.91856 0.90853 0.88946 0.83037 0.89417 0.89413 0.75418 0.87351 0.88758 0.88864 0.85681 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.90 37.16 0.37 -0.57 16 2 C -0.06 -0.43 6.48 -27.88 -0.18 -0.61 16 3 C 0.08 0.87 6.46 -82.26 -0.53 0.34 16 4 C -0.25 -3.26 10.65 -40.01 -0.43 -3.69 16 5 C 0.08 1.17 6.61 -82.41 -0.54 0.63 16 6 C 0.21 3.33 6.75 -5.20 -0.04 3.29 16 7 N -1.12 -20.43 5.12 -11.66 -0.06 -20.49 16 8 S 2.70 59.99 4.96 -107.50 -0.53 59.46 16 9 O -0.96 -24.30 16.53 -57.17 -0.94 -25.24 16 10 O -1.00 -23.13 16.53 -57.17 -0.94 -24.08 16 11 C -0.77 -18.37 5.90 -38.87 -0.23 -18.60 16 12 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 13 C -0.25 -5.40 10.05 -39.29 -0.39 -5.80 16 14 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 15 C -0.16 -3.84 8.66 -38.88 -0.34 -4.17 16 16 C 0.19 4.68 5.55 -106.82 -0.59 4.09 16 17 C -0.44 -10.99 7.63 -37.74 -0.29 -11.28 16 18 H 0.09 2.06 5.83 -52.49 -0.31 1.75 16 19 C 0.08 1.92 5.25 -17.34 -0.09 1.83 16 20 N -0.78 -18.97 10.84 55.55 0.60 -18.37 16 21 Si 0.92 17.94 29.57 -169.99 -5.03 12.91 16 22 H -0.25 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 25 N -0.28 -4.19 12.70 33.67 0.43 -3.76 16 26 N -0.48 -5.36 7.36 33.48 0.25 -5.11 16 27 H 0.43 3.41 8.96 -182.61 -1.64 1.78 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 34 H 0.09 1.41 7.82 -51.93 -0.41 1.01 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.41 7.08 8.47 -34.47 -0.29 6.78 16 37 H 0.11 2.26 7.32 -52.49 -0.38 1.87 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 40 H 0.13 3.07 6.21 -52.49 -0.33 2.75 16 41 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -32.28 360.32 -11.15 -43.43 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -6.29 Total: 12.90 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: -4.06 Total: -37.09 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 1.22 Total: -47.72 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -1.89 Total: -49.32 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 59.99 SS G_CDS: -0.53 Total: 59.46 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.28 -11.15 -43.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866817734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.377 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds