Wall clock time and date at job start Tue Mar 31 2020 18:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47496 * 2 1 4 4 C 1.53001 * 109.47122 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47004 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99968 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00187 * 179.97438 * 6 5 4 9 9 C 1.50705 * 109.47268 * 179.97438 * 8 6 5 10 10 N 1.30204 * 126.11770 * 270.02906 * 9 8 6 11 11 O 1.21278 * 110.62205 * 179.67930 * 10 9 8 12 12 C 1.34559 * 109.60285 * 0.47209 * 11 10 9 13 13 C 1.41807 * 126.75344 * 179.80613 * 12 11 10 14 14 S 1.75668 * 125.24494 * 179.71047 * 13 12 11 15 15 C 1.75462 * 92.10501 * 179.97438 * 14 13 12 16 16 C 1.32581 * 111.42141 * 0.02562 * 15 14 13 17 17 C 1.39701 * 125.24514 * 359.39676 * 13 12 11 18 18 C 1.40362 * 123.74839 * 0.02562 * 17 13 12 19 19 H 1.08002 * 120.00028 * 22.59286 * 18 17 13 20 20 C 1.40167 * 120.00197 * 202.59343 * 18 17 13 21 21 N 1.30748 * 120.00030 * 10.10227 * 20 18 17 22 22 Si 1.86803 * 120.00030 * 190.10574 * 20 18 17 23 23 H 1.48495 * 109.47240 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47231 * 119.99561 * 22 20 18 25 25 H 1.48504 * 109.46985 * 239.99718 * 22 20 18 26 26 N 1.32831 * 106.49393 * 359.53392 * 12 11 10 27 27 H 1.08997 * 109.46969 * 300.00693 * 1 2 3 28 28 H 1.09003 * 109.46509 * 60.00000 * 1 2 3 29 29 H 1.08997 * 109.47690 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46969 * 239.99307 * 2 1 3 31 31 H 1.09003 * 109.46509 * 120.00000 * 2 1 3 32 32 H 1.08993 * 109.47599 * 59.99184 * 3 2 1 33 33 H 1.09008 * 109.46559 * 299.99408 * 3 2 1 34 34 H 1.08997 * 109.47182 * 59.99405 * 4 3 2 35 35 H 1.08999 * 109.46751 * 299.99366 * 4 3 2 36 36 H 0.96992 * 120.00110 * 0.02562 * 5 4 3 37 37 H 1.09004 * 109.46849 * 60.00014 * 8 6 5 38 38 H 1.08997 * 109.46977 * 300.00518 * 8 6 5 39 39 H 1.07995 * 124.29268 * 179.97438 * 15 14 13 40 40 H 1.08001 * 122.76727 * 180.02562 * 16 15 14 41 41 H 0.97003 * 119.99754 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 -0.0013 6 6 5.3836 3.0697 -0.0014 7 8 6.1717 2.1478 -0.0005 8 6 5.8860 4.4905 -0.0026 9 6 7.3931 4.4904 -0.0018 10 7 8.1600 4.4909 1.0503 11 8 9.3289 4.4843 0.7269 12 6 9.4260 4.4892 -0.6151 13 6 10.6204 4.4881 -1.3795 14 16 10.7010 4.4874 -3.1343 15 6 12.4556 4.4870 -3.1183 16 6 12.9285 4.4868 -1.8797 17 6 11.9144 4.4937 -0.8530 18 6 12.1969 4.5006 0.5219 19 1 11.4606 4.1427 1.2263 20 6 13.4346 4.9721 0.9807 21 7 14.2459 5.5854 0.1591 22 14 13.9248 4.7242 2.7661 23 1 12.8392 4.0080 3.4827 24 1 15.1733 3.9227 2.8299 25 1 14.1516 6.0454 3.4052 26 7 8.1829 4.4892 -1.0832 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9563 0.8898 33 1 1.6768 1.9562 -0.8901 34 1 3.9330 0.9285 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 3.4283 3.5608 -0.0008 37 1 5.5226 5.0051 0.8870 38 1 5.5227 5.0035 -0.8930 39 1 13.0722 4.4861 -4.0049 40 1 13.9854 4.4869 -1.6575 41 1 15.1026 5.9113 0.4766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866968558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:33 Heat of formation + Delta-G solvation = 25.498549 kcal Electronic energy + Delta-G solvation = -25114.672776 eV Core-core repulsion = 21316.244519 eV Total energy + Delta-G solvation = -3798.428258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.94852 -39.59057 -36.67599 -36.41434 -34.63985 -33.84220 -33.42789 -32.20382 -30.23655 -28.94403 -28.12796 -26.41282 -23.87430 -22.86569 -22.14673 -21.64046 -20.99818 -20.14449 -18.92615 -17.67855 -17.22083 -16.30271 -16.23342 -16.05429 -15.81849 -15.62223 -15.31582 -14.84922 -14.03748 -13.95005 -13.67824 -13.64091 -13.22660 -12.70715 -12.65850 -12.63940 -12.20296 -12.10696 -11.74932 -11.69921 -11.52938 -11.48213 -11.45052 -11.41566 -11.00662 -10.98733 -10.54339 -10.48620 -10.27440 -9.83318 -9.75362 -9.64504 -9.30944 -9.22177 -9.12896 -7.50564 -7.32852 -7.14170 -4.77760 1.67901 2.65058 2.75449 2.80893 2.85859 2.92486 2.96590 3.17816 3.43049 3.57189 3.63571 3.89261 4.46714 4.49884 4.57298 4.68074 4.71027 4.91694 4.96189 5.01160 5.05356 5.21220 5.31458 5.42408 5.43412 5.54456 5.67010 5.76184 5.79504 5.89572 5.95385 5.97248 6.36461 6.49116 6.52934 6.91884 6.93769 7.15518 7.25448 7.39239 7.43993 7.49821 8.00359 8.20751 8.28949 8.29259 9.51862 9.54562 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002450 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.306495 B =11423.737457 C =12497.161356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.131 4.131 4 C 0.119 3.881 5 N -0.737 5.737 6 C 0.519 3.481 7 O -0.519 6.519 8 C -0.040 4.040 9 C 0.185 3.815 10 N -0.428 5.428 11 O 0.053 5.947 12 C 0.326 3.674 13 C -0.346 4.346 14 S 0.031 5.969 15 C -0.206 4.206 16 C -0.107 4.107 17 C 0.132 3.868 18 C -0.365 4.365 19 H 0.104 0.896 20 C 0.069 3.931 21 N -0.754 5.754 22 Si 0.926 3.074 23 H -0.249 1.249 24 H -0.265 1.265 25 H -0.266 1.266 26 N -0.552 5.552 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.573 -2.947 0.457 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.168 4.168 4 C -0.005 4.005 5 N -0.391 5.391 6 C 0.304 3.696 7 O -0.392 6.392 8 C -0.081 4.081 9 C -0.090 4.090 10 N -0.150 5.150 11 O 0.001 5.999 12 C 0.124 3.876 13 C -0.466 4.466 14 S 0.287 5.713 15 C -0.341 4.341 16 C -0.140 4.140 17 C 0.119 3.881 18 C -0.396 4.396 19 H 0.122 0.878 20 C -0.156 4.156 21 N -0.377 5.377 22 Si 0.748 3.252 23 H -0.172 1.172 24 H -0.190 1.190 25 H -0.190 1.190 26 N -0.290 5.290 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.447 -3.508 -0.242 15.842 hybrid contribution 1.218 0.379 1.666 2.098 sum -14.229 -3.129 1.424 14.638 Atomic orbital electron populations 1.21763 0.95542 1.01775 1.01843 1.21442 0.96029 0.95987 1.02654 1.21825 0.94203 0.98062 1.02759 1.21348 0.93480 0.83133 1.02533 1.45920 1.06917 1.08778 1.77478 1.20421 0.81990 0.91277 0.75948 1.90771 1.55105 1.46179 1.47193 1.19655 0.87681 0.95026 1.05760 1.24212 0.97174 1.01800 0.85775 1.74316 0.90003 1.26552 1.24082 1.85422 1.20565 1.69482 1.24417 1.23307 0.92453 0.91371 0.80478 1.19237 0.90537 1.43123 0.93733 1.83219 1.01368 1.83821 1.02910 1.25226 0.98229 1.09912 1.00732 1.21521 1.01047 1.00648 0.90762 1.18107 0.88440 0.87734 0.93803 1.19946 0.98925 1.28220 0.92558 0.87795 1.26372 0.95129 0.92069 1.02076 1.69699 1.08542 1.21760 1.37709 0.85911 0.79916 0.79769 0.79614 1.17224 1.18956 1.19044 1.72195 0.98858 1.30508 1.27466 0.92713 0.92677 0.92615 0.91574 0.91622 0.91275 0.91225 0.91510 0.91597 0.76661 0.87043 0.86508 0.83903 0.83428 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.13 -0.90 5.33 -26.73 -0.14 -1.04 16 4 C 0.12 1.23 5.67 -4.04 -0.02 1.21 16 5 N -0.74 -8.19 5.56 -60.29 -0.33 -8.53 16 6 C 0.52 8.47 7.82 -10.99 -0.09 8.38 16 7 O -0.52 -11.34 16.03 5.55 0.09 -11.26 16 8 C -0.04 -0.62 6.33 -29.03 -0.18 -0.81 16 9 C 0.18 4.15 6.68 -156.69 -1.05 3.10 16 10 N -0.43 -10.43 12.14 31.37 0.38 -10.05 16 11 O 0.05 1.37 9.18 15.68 0.14 1.52 16 12 C 0.33 8.56 7.88 -16.02 -0.13 8.43 16 13 C -0.35 -8.92 6.34 -37.67 -0.24 -9.16 16 14 S 0.03 0.70 23.16 -107.50 -2.49 -1.79 16 15 C -0.21 -4.33 11.05 28.83 0.32 -4.01 16 16 C -0.11 -2.46 9.04 -39.11 -0.35 -2.81 16 17 C 0.13 3.34 5.68 -106.17 -0.60 2.74 16 18 C -0.37 -9.01 8.65 -38.06 -0.33 -9.34 16 19 H 0.10 2.62 6.13 -52.49 -0.32 2.30 16 20 C 0.07 1.52 5.39 -17.29 -0.09 1.43 16 21 N -0.75 -16.57 10.78 55.56 0.60 -15.97 16 22 Si 0.93 16.83 29.57 -169.99 -5.03 11.81 16 23 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 24 H -0.26 -4.62 7.11 56.52 0.40 -4.21 16 25 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 26 N -0.55 -13.83 11.57 -11.43 -0.13 -13.96 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.40 2.94 8.47 -40.82 -0.35 2.60 16 37 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.14 2.48 8.06 -52.49 -0.42 2.06 16 40 H 0.15 3.30 6.36 -52.49 -0.33 2.96 16 41 H 0.29 5.69 8.29 -40.82 -0.34 5.35 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -32.05 367.92 -9.13 -41.18 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.21 Total: 4.83 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.70 Total: -3.33 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.51 Total: -48.51 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.23 Total: -9.74 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.49 Total: -1.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.05 -9.13 -41.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866968558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.683 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds