Wall clock time and date at job start Tue Mar 31 2020 18:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47496 * 2 1 4 4 C 1.53001 * 109.47122 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47004 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99968 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99903 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00187 * 179.97438 * 6 5 4 9 9 C 1.50705 * 109.47268 * 179.97438 * 8 6 5 10 10 N 1.30204 * 126.11770 * 270.02906 * 9 8 6 11 11 O 1.21278 * 110.62205 * 179.67930 * 10 9 8 12 12 C 1.34559 * 109.60285 * 0.47209 * 11 10 9 13 13 C 1.41807 * 126.75344 * 179.80613 * 12 11 10 14 14 S 1.75668 * 125.24494 * 179.71047 * 13 12 11 15 15 C 1.75462 * 92.10501 * 179.97438 * 14 13 12 16 16 C 1.32581 * 111.42141 * 0.02562 * 15 14 13 17 17 C 1.39701 * 125.24514 * 359.39676 * 13 12 11 18 18 C 1.40362 * 123.74839 * 0.02562 * 17 13 12 19 19 H 1.08002 * 120.00028 * 22.59286 * 18 17 13 20 20 C 1.40167 * 120.00197 * 202.59343 * 18 17 13 21 21 N 1.30748 * 120.00030 * 10.10227 * 20 18 17 22 22 Si 1.86803 * 120.00030 * 190.10574 * 20 18 17 23 23 H 1.48495 * 109.47240 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47231 * 119.99561 * 22 20 18 25 25 H 1.48504 * 109.46985 * 239.99718 * 22 20 18 26 26 N 1.32831 * 106.49393 * 359.53392 * 12 11 10 27 27 H 1.08997 * 109.46969 * 300.00693 * 1 2 3 28 28 H 1.09003 * 109.46509 * 60.00000 * 1 2 3 29 29 H 1.08997 * 109.47690 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46969 * 239.99307 * 2 1 3 31 31 H 1.09003 * 109.46509 * 120.00000 * 2 1 3 32 32 H 1.08993 * 109.47599 * 59.99184 * 3 2 1 33 33 H 1.09008 * 109.46559 * 299.99408 * 3 2 1 34 34 H 1.08997 * 109.47182 * 59.99405 * 4 3 2 35 35 H 1.08999 * 109.46751 * 299.99366 * 4 3 2 36 36 H 0.96992 * 120.00110 * 0.02562 * 5 4 3 37 37 H 1.09004 * 109.46849 * 60.00014 * 8 6 5 38 38 H 1.08997 * 109.46977 * 300.00518 * 8 6 5 39 39 H 1.07995 * 124.29268 * 179.97438 * 15 14 13 40 40 H 1.08001 * 122.76727 * 180.02562 * 16 15 14 41 41 H 0.97003 * 119.99754 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 -0.0013 6 6 5.3836 3.0697 -0.0014 7 8 6.1717 2.1478 -0.0005 8 6 5.8860 4.4905 -0.0026 9 6 7.3931 4.4904 -0.0018 10 7 8.1600 4.4909 1.0503 11 8 9.3289 4.4843 0.7269 12 6 9.4260 4.4892 -0.6151 13 6 10.6204 4.4881 -1.3795 14 16 10.7010 4.4874 -3.1343 15 6 12.4556 4.4870 -3.1183 16 6 12.9285 4.4868 -1.8797 17 6 11.9144 4.4937 -0.8530 18 6 12.1969 4.5006 0.5219 19 1 11.4606 4.1427 1.2263 20 6 13.4346 4.9721 0.9807 21 7 14.2459 5.5854 0.1591 22 14 13.9248 4.7242 2.7661 23 1 12.8392 4.0080 3.4827 24 1 15.1733 3.9227 2.8299 25 1 14.1516 6.0454 3.4052 26 7 8.1829 4.4892 -1.0832 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9563 0.8898 33 1 1.6768 1.9562 -0.8901 34 1 3.9330 0.9285 -0.8908 35 1 3.9337 0.9284 0.8892 36 1 3.4283 3.5608 -0.0008 37 1 5.5226 5.0051 0.8870 38 1 5.5227 5.0035 -0.8930 39 1 13.0722 4.4861 -4.0049 40 1 13.9854 4.4869 -1.6575 41 1 15.1026 5.9113 0.4766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866968558.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:32 Heat of formation + Delta-G solvation = 3.140420 kcal Electronic energy + Delta-G solvation = -25115.642298 eV Core-core repulsion = 21316.244519 eV Total energy + Delta-G solvation = -3799.397779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.76164 -40.85229 -38.47722 -37.28371 -36.37746 -35.19891 -34.76156 -33.91384 -31.57882 -30.48051 -29.23548 -28.26618 -24.81400 -24.66140 -23.73642 -22.63869 -22.31039 -21.43408 -20.65900 -19.43060 -18.76170 -17.82588 -17.61251 -17.56498 -17.08683 -17.00576 -16.84900 -15.98658 -15.56798 -14.97259 -14.85968 -14.58049 -14.44543 -14.29733 -14.23657 -13.98874 -13.49822 -13.35818 -13.28580 -13.19992 -12.96220 -12.80354 -12.48489 -12.31278 -12.13280 -12.11938 -12.05053 -12.00171 -11.51960 -11.51208 -11.45706 -11.28311 -11.08344 -10.89780 -10.20684 -9.31550 -9.09391 -8.94311 -6.65024 -0.14956 0.96410 1.14459 1.30961 1.35292 1.49175 1.50795 1.64611 1.66448 2.05202 2.11231 2.24198 2.80007 2.99824 3.06922 3.49859 3.79543 3.85624 3.99508 4.17033 4.22224 4.30751 4.39219 4.43303 4.61911 4.66059 4.77908 4.84081 4.91270 4.92877 5.04373 5.10667 5.19254 5.24763 5.34715 5.36015 5.36890 5.42740 5.46069 5.56019 5.67042 6.13930 6.33799 6.45130 6.46123 7.16066 7.65193 7.85679 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002450 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.306495 B =11423.737457 C =12497.161356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.118 4.118 4 C 0.116 3.884 5 N -0.709 5.709 6 C 0.518 3.482 7 O -0.585 6.585 8 C -0.040 4.040 9 C 0.192 3.808 10 N -0.450 5.450 11 O 0.023 5.977 12 C 0.306 3.694 13 C -0.385 4.385 14 S 0.034 5.966 15 C -0.182 4.182 16 C -0.127 4.127 17 C 0.107 3.893 18 C -0.382 4.382 19 H 0.087 0.913 20 C 0.039 3.961 21 N -0.760 5.760 22 Si 0.991 3.009 23 H -0.267 1.267 24 H -0.244 1.244 25 H -0.253 1.253 26 N -0.574 5.574 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.422 0.578 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.186 0.814 40 H 0.154 0.846 41 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 -2.137 0.524 15.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.007 4.007 5 N -0.363 5.363 6 C 0.304 3.696 7 O -0.465 6.465 8 C -0.081 4.081 9 C -0.083 4.083 10 N -0.177 5.177 11 O -0.023 6.023 12 C 0.105 3.895 13 C -0.506 4.506 14 S 0.289 5.711 15 C -0.317 4.317 16 C -0.159 4.159 17 C 0.095 3.905 18 C -0.412 4.412 19 H 0.105 0.895 20 C -0.185 4.185 21 N -0.382 5.382 22 Si 0.809 3.191 23 H -0.191 1.191 24 H -0.168 1.168 25 H -0.177 1.177 26 N -0.313 5.313 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.260 0.740 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.203 0.797 40 H 0.172 0.828 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -16.045 -2.659 -0.198 16.265 hybrid contribution 1.414 0.144 1.615 2.151 sum -14.630 -2.515 1.417 14.912 Atomic orbital electron populations 1.21742 0.94438 1.02144 1.02352 1.21461 0.96931 0.95707 1.02256 1.21761 0.91039 0.98607 1.04136 1.21447 0.95960 0.82209 1.01112 1.45715 1.05545 1.10136 1.74900 1.20550 0.83085 0.90710 0.75256 1.90755 1.57067 1.47884 1.50763 1.20014 0.83423 0.95477 1.09168 1.25263 0.99757 0.98757 0.84502 1.74260 0.89764 1.28681 1.24989 1.85378 1.21612 1.70699 1.24578 1.23649 0.93293 0.91771 0.80742 1.19666 0.90837 1.44585 0.95468 1.83029 1.02934 1.84109 1.01041 1.25631 0.97479 1.07010 1.01572 1.21514 1.00786 1.02631 0.90943 1.18528 0.89120 0.88060 0.94815 1.20114 1.00046 1.28611 0.92458 0.89536 1.27067 0.94161 0.91404 1.05895 1.69645 1.09013 1.20201 1.39310 0.84994 0.79574 0.80169 0.74357 1.19092 1.16762 1.17736 1.72187 0.98837 1.31686 1.28553 0.92158 0.92174 0.92410 0.92108 0.92075 0.89782 0.89839 0.93132 0.93050 0.73975 0.83296 0.83262 0.79696 0.82845 0.87586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.13 -1.49 5.93 30.59 0.18 -1.30 16 3 C -0.12 -1.37 5.33 30.59 0.16 -1.20 16 4 C 0.12 2.33 5.67 86.38 0.49 2.82 16 5 N -0.71 -14.61 5.56 -463.06 -2.57 -17.18 16 6 C 0.52 16.69 7.82 87.66 0.69 17.38 16 7 O -0.59 -26.48 16.03 -3.04 -0.05 -26.53 16 8 C -0.04 -1.20 6.33 29.10 0.18 -1.02 16 9 C 0.19 8.78 6.68 138.57 0.93 9.71 16 10 N -0.45 -22.81 12.14 -57.49 -0.70 -23.50 16 11 O 0.02 1.27 9.18 66.16 0.61 1.88 16 12 C 0.31 16.87 7.88 85.52 0.67 17.54 16 13 C -0.39 -20.63 6.34 23.51 0.15 -20.48 16 14 S 0.03 1.55 23.16 -56.49 -1.31 0.24 16 15 C -0.18 -7.44 11.05 66.67 0.74 -6.70 16 16 C -0.13 -5.79 9.04 22.66 0.20 -5.59 16 17 C 0.11 5.59 5.68 -20.87 -0.12 5.47 16 18 C -0.38 -19.45 8.65 23.26 0.20 -19.25 16 19 H 0.09 4.63 6.13 -2.91 -0.02 4.61 16 20 C 0.04 1.73 5.39 85.32 0.46 2.19 16 21 N -0.76 -32.52 10.78 21.87 0.24 -32.28 16 22 Si 0.99 33.89 29.57 68.60 2.03 35.92 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.14 16 24 H -0.24 -7.55 7.11 99.48 0.71 -6.84 16 25 H -0.25 -8.16 7.11 99.48 0.71 -7.46 16 26 N -0.57 -29.66 11.57 -305.74 -3.54 -33.19 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.42 4.88 8.47 -92.71 -0.79 4.10 16 37 H 0.15 3.31 8.14 -2.38 -0.02 3.29 16 38 H 0.15 3.47 8.14 -2.39 -0.02 3.45 16 39 H 0.19 5.84 8.06 -2.91 -0.02 5.81 16 40 H 0.15 6.74 6.36 -2.91 -0.02 6.72 16 41 H 0.31 11.41 8.29 -92.71 -0.77 10.64 16 Total: -1.00 -74.35 367.92 0.65 -73.70 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.29 Total: 22.06 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.65 Total: -1.10 kcal Atomic # 7 Polarization: -99.59 SS G_CDS: -6.57 Total: -106.17 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.56 Total: -24.65 kcal Atomic # 14 Polarization: 33.89 SS G_CDS: 2.03 Total: 35.92 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.31 Total: 0.24 kcal Total: -74.35 0.65 -73.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866968558.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.842 kcal (2) G-P(sol) polarization free energy of solvation -74.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds