Wall clock time and date at job start Tue Mar 31 2020 19:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46522 * 2 1 4 4 N 1.46499 * 109.47320 * 240.00053 * 2 1 3 5 5 S 1.65595 * 119.99949 * 95.73272 * 4 2 1 6 6 O 1.42103 * 106.40700 * 309.77192 * 5 4 2 7 7 O 1.42105 * 106.40526 * 176.85092 * 5 4 2 8 8 C 1.76204 * 107.21745 * 63.31582 * 5 4 2 9 9 C 1.37644 * 120.12674 * 244.46579 * 8 5 4 10 10 C 1.38607 * 120.25144 * 180.02562 * 9 8 5 11 11 C 1.38663 * 120.49725 * 359.97438 * 10 9 8 12 12 C 1.37588 * 120.25072 * 0.02562 * 11 10 9 13 13 C 1.40690 * 120.13083 * 64.46589 * 8 5 4 14 14 C 1.41399 * 120.24138 * 0.02562 * 13 8 5 15 15 H 1.07995 * 120.00412 * 328.77316 * 14 13 8 16 16 C 1.39950 * 119.99878 * 148.77773 * 14 13 8 17 17 N 1.30826 * 119.99722 * 347.90021 * 16 14 13 18 18 Si 1.86796 * 120.00198 * 167.90473 * 16 14 13 19 19 H 1.48494 * 109.47346 * 64.99030 * 18 16 14 20 20 H 1.48499 * 109.47228 * 184.99870 * 18 16 14 21 21 H 1.48507 * 109.46716 * 304.99581 * 18 16 14 22 22 C 1.50702 * 109.47347 * 119.99693 * 2 1 3 23 23 C 1.35310 * 126.12527 * 121.16712 * 22 2 1 24 24 C 1.39866 * 107.92021 * 179.90336 * 23 22 2 25 25 N 1.30839 * 108.20210 * 0.36715 * 24 23 22 26 26 N 1.34942 * 126.12743 * 301.48174 * 22 2 1 27 27 C 1.46505 * 126.03899 * 359.97438 * 26 22 2 28 28 H 1.08994 * 109.47462 * 60.00395 * 1 2 3 29 29 H 1.09004 * 109.46522 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47404 * 299.99688 * 1 2 3 31 31 H 0.96995 * 119.99987 * 275.74041 * 4 2 1 32 32 H 1.08010 * 119.87450 * 359.97399 * 9 8 5 33 33 H 1.08002 * 119.75350 * 180.02562 * 10 9 8 34 34 H 1.08000 * 119.87315 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.12880 * 179.71843 * 12 11 10 36 36 H 0.96998 * 119.99348 * 180.02562 * 17 16 14 37 37 H 1.08004 * 126.04136 * 0.04351 * 23 22 2 38 38 H 1.08003 * 125.90082 * 180.14145 * 24 23 22 39 39 H 1.08993 * 109.47185 * 93.17906 * 27 26 22 40 40 H 1.09002 * 109.47174 * 213.18305 * 27 26 22 41 41 H 1.09003 * 109.46758 * 333.18270 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4295 0.1788 -2.5443 6 8 1.3356 1.0453 -2.8120 7 8 2.9282 -0.7580 -3.4893 8 6 3.7871 1.2124 -2.1044 9 6 3.6457 2.5815 -2.1179 10 6 4.7121 3.3970 -1.7729 11 6 5.9314 2.8453 -1.4103 12 6 6.0955 1.4793 -1.3897 13 6 5.0197 0.6415 -1.7381 14 6 5.1767 -0.7636 -1.7211 15 1 4.3350 -1.3983 -1.4868 16 6 6.4230 -1.3319 -2.0079 17 7 7.3759 -0.5952 -2.5188 18 14 6.7261 -3.1423 -1.6616 19 1 5.8519 -3.9664 -2.5343 20 1 8.1486 -3.4676 -1.9369 21 1 6.4186 -3.4320 -0.2379 22 6 2.0324 -0.7103 1.2305 23 6 2.8317 -1.8020 1.2510 24 6 3.0632 -2.1408 2.5881 25 7 2.4194 -1.2880 3.3432 26 7 1.7610 -0.3752 2.5092 27 6 0.9252 0.7452 2.9477 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.1009 -1.6570 -1.1985 32 1 2.7005 3.0220 -2.3993 33 1 4.5921 4.4703 -1.7859 34 1 6.7554 3.4902 -1.1429 35 1 7.0474 1.0518 -1.1113 36 1 8.2396 -0.9892 -2.7179 37 1 3.2236 -2.3189 0.3875 38 1 3.6660 -2.9662 2.9370 39 1 -0.0978 0.3994 3.0955 40 1 1.3134 1.1428 3.8855 41 1 0.9383 1.5272 2.1884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867853576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:19 Heat of formation + Delta-G solvation = 22.332657 kcal Electronic energy + Delta-G solvation = -27907.573153 eV Core-core repulsion = 24109.007612 eV Total energy + Delta-G solvation = -3798.565541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11435 -37.62820 -36.45837 -35.95306 -34.89234 -33.88657 -33.22805 -30.30915 -29.97997 -29.59336 -28.84249 -26.65827 -25.55511 -23.23903 -21.71391 -21.18195 -20.95661 -19.67146 -18.78967 -17.74709 -17.27694 -16.56905 -15.97167 -15.49316 -15.35271 -15.26645 -14.44747 -14.38138 -14.23282 -13.61257 -13.42340 -13.25813 -13.19718 -13.06366 -12.75217 -12.54322 -12.29619 -12.02527 -11.89266 -11.56428 -11.42057 -11.29565 -11.17472 -11.13352 -11.06669 -11.05179 -10.72553 -10.56048 -10.42277 -9.92320 -9.68287 -9.41816 -9.13752 -8.91459 -8.28382 -8.07236 -7.62013 -7.04015 -4.77064 1.42662 2.03085 2.30460 2.63672 2.72081 2.97274 2.99940 3.07935 3.11735 3.78078 3.80218 4.39685 4.47967 4.65661 4.72603 5.08115 5.10684 5.17239 5.25007 5.32349 5.36324 5.47986 5.57463 5.80047 5.81460 5.97127 6.00287 6.13736 6.19940 6.25185 6.36039 6.49514 6.75922 6.85857 6.90976 7.04917 7.15044 7.27766 7.39787 7.46706 7.62349 7.76822 7.86565 7.88369 8.25364 8.49267 8.61777 9.90759 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.006499 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.684544 B = 4307.608160 C = 5315.060512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.226 3.774 3 H 0.100 0.900 4 N -1.110 6.110 5 S 2.699 3.301 6 O -0.995 6.995 7 O -0.959 6.959 8 C -0.777 4.777 9 C -0.006 4.006 10 C -0.249 4.249 11 C -0.077 4.077 12 C -0.154 4.154 13 C 0.192 3.808 14 C -0.445 4.445 15 H 0.088 0.912 16 C 0.082 3.918 17 N -0.777 5.777 18 Si 0.909 3.091 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.255 1.255 22 C 0.085 3.915 23 C -0.252 4.252 24 C 0.047 3.953 25 N -0.303 5.303 26 N -0.371 5.371 27 C 0.098 3.902 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.415 0.585 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.288 0.712 37 H 0.150 0.850 38 H 0.181 0.819 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 -0.787 7.915 11.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.116 3.884 3 H 0.118 0.882 4 N -0.866 5.866 5 S 2.797 3.203 6 O -0.985 6.985 7 O -0.949 6.949 8 C -0.873 4.873 9 C -0.026 4.026 10 C -0.269 4.269 11 C -0.096 4.096 12 C -0.174 4.174 13 C 0.187 3.813 14 C -0.473 4.473 15 H 0.105 0.895 16 C -0.139 4.139 17 N -0.400 5.400 18 Si 0.732 3.268 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.179 1.179 22 C -0.044 4.044 23 C -0.281 4.281 24 C -0.138 4.138 25 N -0.124 5.124 26 N -0.155 5.155 27 C -0.044 4.044 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.249 0.751 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.168 0.832 38 H 0.198 0.802 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.411 -0.228 8.233 11.771 hybrid contribution 1.299 -0.990 -0.245 1.652 sum -7.111 -1.218 7.988 10.764 Atomic orbital electron populations 1.22435 0.94138 1.03225 1.03395 1.18881 0.93706 0.95138 0.80690 0.88244 1.55810 1.82538 1.19246 1.28996 1.01206 0.73578 0.73266 0.72271 1.93453 1.53706 1.67621 1.83721 1.93560 1.80976 1.62523 1.57863 1.29846 1.16894 1.06596 1.33935 1.20258 0.97309 0.91936 0.93048 1.20483 0.94875 0.97410 1.14165 1.20896 0.95807 0.95373 0.97539 1.21441 0.99901 0.92132 1.03877 1.16967 0.88837 0.92846 0.82662 1.19773 0.96560 0.91489 1.39457 0.89455 1.25922 0.94941 1.01366 0.91677 1.69769 1.04343 1.38662 1.27226 0.86298 0.78547 0.81253 0.80682 1.18075 1.19979 1.17914 1.21120 0.99382 0.97424 0.86437 1.21236 1.07533 1.01391 0.97984 1.23786 0.98972 0.98836 0.92201 1.77296 1.13866 1.03500 1.17764 1.48282 1.39622 1.24398 1.03187 1.21905 0.93738 0.86362 1.02365 0.89878 0.91710 0.91846 0.75094 0.87400 0.88740 0.88845 0.86179 0.90080 0.83189 0.80211 0.90829 0.89519 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 9.37 37.16 0.35 -1.73 16 2 C 0.23 3.32 2.74 -69.08 -0.19 3.13 16 3 H 0.10 1.50 7.76 -51.93 -0.40 1.10 16 4 N -1.11 -18.41 4.24 -5.88 -0.02 -18.43 16 5 S 2.70 56.14 4.87 -107.50 -0.52 55.61 16 6 O -0.99 -21.06 16.34 -57.17 -0.93 -22.00 16 7 O -0.96 -23.05 16.67 -57.17 -0.95 -24.01 16 8 C -0.78 -17.89 5.68 -38.87 -0.22 -18.11 16 9 C -0.01 -0.12 9.53 -39.66 -0.38 -0.50 16 10 C -0.25 -5.30 10.05 -39.29 -0.39 -5.69 16 11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 12 C -0.15 -3.74 8.65 -38.88 -0.34 -4.07 16 13 C 0.19 4.74 5.51 -106.82 -0.59 4.15 16 14 C -0.44 -10.76 7.56 -37.74 -0.29 -11.05 16 15 H 0.09 1.94 5.76 -52.49 -0.30 1.64 16 16 C 0.08 1.94 5.21 -17.34 -0.09 1.85 16 17 N -0.78 -18.95 11.08 55.55 0.62 -18.33 16 18 Si 0.91 17.56 29.58 -169.99 -5.03 12.53 16 19 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 22 C 0.08 1.28 6.23 -82.27 -0.51 0.77 16 23 C -0.25 -3.93 9.90 -40.02 -0.40 -4.32 16 24 C 0.05 0.70 12.03 -17.37 -0.21 0.49 16 25 N -0.30 -4.71 12.58 30.62 0.39 -4.33 16 26 N -0.37 -5.25 4.01 -63.88 -0.26 -5.50 16 27 C 0.10 0.96 9.85 59.85 0.59 1.55 16 28 H 0.08 1.07 7.72 -51.93 -0.40 0.67 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.60 5.84 -51.93 -0.30 0.30 16 31 H 0.41 6.20 7.35 -34.46 -0.25 5.94 16 32 H 0.11 2.15 7.33 -52.48 -0.38 1.76 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.12 2.96 6.46 -52.48 -0.34 2.62 16 36 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 37 H 0.15 2.28 7.03 -52.48 -0.37 1.91 16 38 H 0.18 2.10 8.06 -52.48 -0.42 1.67 16 39 H 0.07 0.58 7.96 -51.93 -0.41 0.16 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.75 7.17 -51.93 -0.37 0.38 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -31.64 352.16 -9.26 -40.90 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -4.79 Total: 13.89 kcal Atomic # 6 Polarization: -32.58 SS G_CDS: -3.06 Total: -35.64 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.72 Total: -46.60 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.89 Total: -46.00 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 16 Polarization: 56.14 SS G_CDS: -0.52 Total: 55.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.64 -9.26 -40.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867853576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.233 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds