Wall clock time and date at job start Tue Mar 31 2020 19:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46522 * 2 1 4 4 N 1.46499 * 109.47320 * 240.00053 * 2 1 3 5 5 S 1.65595 * 119.99949 * 95.73272 * 4 2 1 6 6 O 1.42103 * 106.40700 * 309.77192 * 5 4 2 7 7 O 1.42105 * 106.40526 * 176.85092 * 5 4 2 8 8 C 1.76204 * 107.21745 * 63.31582 * 5 4 2 9 9 C 1.37644 * 120.12674 * 244.46579 * 8 5 4 10 10 C 1.38607 * 120.25144 * 180.02562 * 9 8 5 11 11 C 1.38663 * 120.49725 * 359.97438 * 10 9 8 12 12 C 1.37588 * 120.25072 * 0.02562 * 11 10 9 13 13 C 1.40690 * 120.13083 * 64.46589 * 8 5 4 14 14 C 1.41399 * 120.24138 * 0.02562 * 13 8 5 15 15 H 1.07995 * 120.00412 * 328.77316 * 14 13 8 16 16 C 1.39950 * 119.99878 * 148.77773 * 14 13 8 17 17 N 1.30826 * 119.99722 * 347.90021 * 16 14 13 18 18 Si 1.86796 * 120.00198 * 167.90473 * 16 14 13 19 19 H 1.48494 * 109.47346 * 64.99030 * 18 16 14 20 20 H 1.48499 * 109.47228 * 184.99870 * 18 16 14 21 21 H 1.48507 * 109.46716 * 304.99581 * 18 16 14 22 22 C 1.50702 * 109.47347 * 119.99693 * 2 1 3 23 23 C 1.35310 * 126.12527 * 121.16712 * 22 2 1 24 24 C 1.39866 * 107.92021 * 179.90336 * 23 22 2 25 25 N 1.30839 * 108.20210 * 0.36715 * 24 23 22 26 26 N 1.34942 * 126.12743 * 301.48174 * 22 2 1 27 27 C 1.46505 * 126.03899 * 359.97438 * 26 22 2 28 28 H 1.08994 * 109.47462 * 60.00395 * 1 2 3 29 29 H 1.09004 * 109.46522 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47404 * 299.99688 * 1 2 3 31 31 H 0.96995 * 119.99987 * 275.74041 * 4 2 1 32 32 H 1.08010 * 119.87450 * 359.97399 * 9 8 5 33 33 H 1.08002 * 119.75350 * 180.02562 * 10 9 8 34 34 H 1.08000 * 119.87315 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.12880 * 179.71843 * 12 11 10 36 36 H 0.96998 * 119.99348 * 180.02562 * 17 16 14 37 37 H 1.08004 * 126.04136 * 0.04351 * 23 22 2 38 38 H 1.08003 * 125.90082 * 180.14145 * 24 23 22 39 39 H 1.08993 * 109.47185 * 93.17906 * 27 26 22 40 40 H 1.09002 * 109.47174 * 213.18305 * 27 26 22 41 41 H 1.09003 * 109.46758 * 333.18270 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 16 2.4295 0.1788 -2.5443 6 8 1.3356 1.0453 -2.8120 7 8 2.9282 -0.7580 -3.4893 8 6 3.7871 1.2124 -2.1044 9 6 3.6457 2.5815 -2.1179 10 6 4.7121 3.3970 -1.7729 11 6 5.9314 2.8453 -1.4103 12 6 6.0955 1.4793 -1.3897 13 6 5.0197 0.6415 -1.7381 14 6 5.1767 -0.7636 -1.7211 15 1 4.3350 -1.3983 -1.4868 16 6 6.4230 -1.3319 -2.0079 17 7 7.3759 -0.5952 -2.5188 18 14 6.7261 -3.1423 -1.6616 19 1 5.8519 -3.9664 -2.5343 20 1 8.1486 -3.4676 -1.9369 21 1 6.4186 -3.4320 -0.2379 22 6 2.0324 -0.7103 1.2305 23 6 2.8317 -1.8020 1.2510 24 6 3.0632 -2.1408 2.5881 25 7 2.4194 -1.2880 3.3432 26 7 1.7610 -0.3752 2.5092 27 6 0.9252 0.7452 2.9477 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.1009 -1.6570 -1.1985 32 1 2.7005 3.0220 -2.3993 33 1 4.5921 4.4703 -1.7859 34 1 6.7554 3.4902 -1.1429 35 1 7.0474 1.0518 -1.1113 36 1 8.2396 -0.9892 -2.7179 37 1 3.2236 -2.3189 0.3875 38 1 3.6660 -2.9662 2.9370 39 1 -0.0978 0.3994 3.0955 40 1 1.3134 1.1428 3.8855 41 1 0.9383 1.5272 2.1884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867853576.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:18 Heat of formation + Delta-G solvation = 1.207863 kcal Electronic energy + Delta-G solvation = -27908.489193 eV Core-core repulsion = 24109.007612 eV Total energy + Delta-G solvation = -3799.481581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.21459 -39.36565 -38.08914 -37.29387 -36.64989 -35.62328 -34.23394 -32.02987 -31.40889 -31.16958 -29.92507 -27.58901 -27.31039 -24.35835 -23.44080 -22.93290 -22.08137 -20.80193 -20.29186 -19.47930 -18.75898 -18.07647 -17.53419 -17.01967 -16.72895 -16.36538 -16.02051 -15.92944 -15.33987 -15.09868 -14.98227 -14.60908 -14.43601 -14.34634 -14.11103 -13.73380 -13.44843 -13.32523 -13.21708 -13.15286 -12.97404 -12.90099 -12.83435 -12.74534 -12.58189 -12.43263 -12.21612 -12.15873 -11.64273 -11.60380 -11.23765 -11.11642 -10.53359 -10.10563 -9.83076 -9.40993 -9.39749 -8.77255 -6.57571 -0.20169 0.54195 0.91472 0.99585 1.39201 1.49786 1.55190 1.63534 1.93576 2.18509 2.31386 2.66409 2.97583 3.40694 3.48805 3.74845 3.85907 3.96933 4.14546 4.29426 4.36804 4.43336 4.45518 4.50204 4.64914 4.71378 4.75100 4.80153 4.93277 4.94220 5.05703 5.15468 5.29736 5.30258 5.35322 5.54227 5.71286 5.76656 5.83411 6.00981 6.10053 6.10479 6.13969 6.49079 6.71187 6.77053 6.85334 8.20315 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.006499 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.684544 B = 4307.608160 C = 5315.060512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.223 3.777 3 H 0.096 0.904 4 N -1.100 6.100 5 S 2.723 3.277 6 O -0.998 6.998 7 O -0.995 6.995 8 C -0.793 4.793 9 C -0.015 4.015 10 C -0.250 4.250 11 C -0.077 4.077 12 C -0.185 4.185 13 C 0.168 3.832 14 C -0.471 4.471 15 H 0.097 0.903 16 C 0.040 3.960 17 N -0.812 5.812 18 Si 0.966 3.034 19 H -0.259 1.259 20 H -0.268 1.268 21 H -0.239 1.239 22 C 0.081 3.919 23 C -0.276 4.276 24 C 0.041 3.959 25 N -0.323 5.323 26 N -0.370 5.370 27 C 0.083 3.917 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.422 0.578 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.293 0.707 37 H 0.147 0.853 38 H 0.204 0.796 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.166 -0.500 9.067 12.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.113 3.887 3 H 0.113 0.887 4 N -0.859 5.859 5 S 2.819 3.181 6 O -0.988 6.988 7 O -0.986 6.986 8 C -0.887 4.887 9 C -0.035 4.035 10 C -0.270 4.270 11 C -0.096 4.096 12 C -0.205 4.205 13 C 0.163 3.837 14 C -0.499 4.499 15 H 0.115 0.885 16 C -0.177 4.177 17 N -0.436 5.436 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.162 1.162 22 C -0.049 4.049 23 C -0.305 4.305 24 C -0.143 4.143 25 N -0.145 5.145 26 N -0.153 5.153 27 C -0.057 4.057 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.165 0.835 38 H 0.220 0.780 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.758 0.091 9.406 13.554 hybrid contribution 1.637 -0.933 -0.577 1.971 sum -8.121 -0.842 8.829 12.025 Atomic orbital electron populations 1.22423 0.91724 1.04123 1.04496 1.19086 0.95477 0.94489 0.79603 0.88672 1.55412 1.82148 1.19481 1.28888 1.00392 0.72800 0.72615 0.72307 1.93440 1.53272 1.67907 1.84170 1.93507 1.81582 1.63439 1.60039 1.30201 1.17416 1.07749 1.33317 1.20616 0.98453 0.91734 0.92712 1.20886 0.94140 0.99145 1.12825 1.21234 0.97087 0.94892 0.96403 1.21486 0.99705 0.93374 1.05900 1.17272 0.89652 0.93520 0.83232 1.20076 0.97524 0.91805 1.40476 0.88506 1.26774 0.94524 1.05363 0.91074 1.69825 1.04944 1.40448 1.28420 0.85457 0.78595 0.76137 0.81258 1.18338 1.19207 1.16169 1.21134 0.99390 0.97379 0.86972 1.21402 1.08433 1.02233 0.98443 1.24186 0.98985 0.99344 0.91815 1.77248 1.14564 1.04184 1.18485 1.48598 1.39389 1.24727 1.02615 1.22315 0.94437 0.85676 1.03257 0.90566 0.90966 0.88934 0.74093 0.85459 0.85463 0.86324 0.87594 0.89587 0.83539 0.77967 0.88395 0.88665 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.63 9.37 71.98 0.67 -2.95 16 2 C 0.22 6.21 2.74 44.25 0.12 6.33 16 3 H 0.10 2.74 7.76 -2.38 -0.02 2.72 16 4 N -1.10 -35.73 4.24 -172.51 -0.73 -36.46 16 5 S 2.72 112.39 4.87 -56.49 -0.28 112.12 16 6 O -1.00 -41.08 16.34 -128.00 -2.09 -43.18 16 7 O -1.00 -48.36 16.67 -128.00 -2.13 -50.49 16 8 C -0.79 -36.46 5.68 22.73 0.13 -36.33 16 9 C -0.02 -0.66 9.53 22.22 0.21 -0.45 16 10 C -0.25 -10.19 10.05 22.46 0.23 -9.96 16 11 C -0.08 -3.36 10.02 22.22 0.22 -3.14 16 12 C -0.18 -9.16 8.65 22.73 0.20 -8.96 16 13 C 0.17 8.44 5.51 -21.29 -0.12 8.32 16 14 C -0.47 -23.24 7.56 23.46 0.18 -23.06 16 15 H 0.10 4.38 5.76 -2.91 -0.02 4.36 16 16 C 0.04 1.94 5.21 85.26 0.44 2.38 16 17 N -0.81 -40.75 11.08 21.83 0.24 -40.51 16 18 Si 0.97 36.08 29.58 68.60 2.03 38.11 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 20 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 21 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 22 C 0.08 2.33 6.23 41.41 0.26 2.59 16 23 C -0.28 -8.39 9.90 21.99 0.22 -8.17 16 24 C 0.04 1.17 12.03 85.23 1.02 2.20 16 25 N -0.32 -9.59 12.58 -57.02 -0.72 -10.31 16 26 N -0.37 -9.76 4.01 -356.03 -1.43 -11.19 16 27 C 0.08 1.40 9.85 127.77 1.26 2.66 16 28 H 0.08 1.78 7.72 -2.39 -0.02 1.76 16 29 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.09 1.44 5.84 -2.39 -0.01 1.42 16 31 H 0.42 12.47 7.35 -96.75 -0.71 11.76 16 32 H 0.13 4.82 7.33 -2.91 -0.02 4.80 16 33 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 34 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.11 5.44 6.46 -2.91 -0.02 5.42 16 36 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 37 H 0.15 4.43 7.03 -2.91 -0.02 4.41 16 38 H 0.20 4.45 8.06 -2.91 -0.02 4.42 16 39 H 0.10 1.19 7.96 -2.39 -0.02 1.17 16 40 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.10 1.43 7.17 -2.39 -0.02 1.41 16 Total: -1.00 -68.34 352.16 0.31 -68.03 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: 0.37 Total: 42.42 kcal Atomic # 6 Polarization: -73.59 SS G_CDS: 5.05 Total: -68.55 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -2.64 Total: -98.47 kcal Atomic # 8 Polarization: -89.44 SS G_CDS: -4.23 Total: -93.67 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Atomic # 16 Polarization: 112.39 SS G_CDS: -0.28 Total: 112.12 kcal Total: -68.34 0.31 -68.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867853576.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.243 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds