Wall clock time and date at job start Tue Mar 31 2020 19:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46718 * 2 1 4 4 C 1.50697 * 109.46853 * 240.00446 * 2 1 3 5 5 H 1.08009 * 119.99881 * 239.99913 * 4 2 1 6 6 C 1.37877 * 120.00619 * 59.99803 * 4 2 1 7 7 N 1.31511 * 120.00239 * 179.72866 * 6 4 2 8 8 Si 1.86802 * 119.99643 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47216 * 269.72796 * 8 6 4 10 10 H 1.48504 * 109.46839 * 29.72754 * 8 6 4 11 11 H 1.48495 * 109.47149 * 149.72594 * 8 6 4 12 12 N 1.46494 * 109.47518 * 120.00158 * 2 1 3 13 13 C 1.46505 * 120.00042 * 59.99506 * 12 2 1 14 14 C 1.34779 * 120.00026 * 240.00042 * 12 2 1 15 15 O 1.21591 * 119.99995 * 0.02562 * 14 12 2 16 16 N 1.34777 * 119.99886 * 179.97438 * 14 12 2 17 17 C 1.40097 * 119.99814 * 175.39915 * 16 14 12 18 18 C 1.38891 * 120.10847 * 214.79945 * 17 16 14 19 19 C 1.38028 * 120.34169 * 179.70202 * 18 17 16 20 20 C 1.39068 * 120.34837 * 0.52136 * 19 18 17 21 21 C 1.39546 * 119.15021 * 359.86673 * 20 19 18 22 22 C 1.38486 * 120.50145 * 359.80224 * 21 20 19 23 23 S 1.76445 * 119.36387 * 179.63902 * 21 20 19 24 24 C 1.81706 * 101.81322 * 329.43462 * 23 21 20 25 25 C 1.50373 * 108.98351 * 44.77858 * 24 23 21 26 26 O 1.21300 * 118.28167 * 144.96349 * 25 24 23 27 27 N 1.33109 * 123.44513 * 324.97997 * 25 24 23 28 28 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46973 * 299.99844 * 1 2 3 30 30 H 1.08997 * 109.47252 * 59.99869 * 1 2 3 31 31 H 0.97003 * 119.99587 * 180.27287 * 7 6 4 32 32 H 1.08998 * 109.46696 * 90.00089 * 13 12 2 33 33 H 1.08995 * 109.47268 * 209.99818 * 13 12 2 34 34 H 1.08996 * 109.46918 * 330.00793 * 13 12 2 35 35 H 0.96997 * 119.99942 * 355.41132 * 16 14 12 36 36 H 1.07999 * 119.82839 * 359.96844 * 18 17 16 37 37 H 1.08002 * 119.82756 * 180.28526 * 19 18 17 38 38 H 1.07996 * 120.06450 * 180.15609 * 22 21 20 39 39 H 1.09005 * 109.54423 * 284.93020 * 24 23 21 40 40 H 1.09001 * 109.64020 * 164.68296 * 24 23 21 41 41 H 0.96996 * 117.08339 * 179.08006 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 2.1419 -0.8561 -3.5566 8 14 0.6246 1.2791 -2.6541 9 1 -0.8026 0.8722 -2.7064 10 1 0.8420 2.1734 -1.4886 11 1 0.9802 1.9988 -3.9034 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0832 15 8 3.0866 1.1287 1.8911 16 7 3.2422 -0.6708 3.1839 17 6 4.1253 -0.0213 4.0563 18 6 5.1170 -0.7427 4.7083 19 6 5.9935 -0.1067 5.5641 20 6 5.8860 1.2612 5.7908 21 6 4.8833 1.9813 5.1402 22 6 4.0082 1.3444 4.2763 23 16 4.7358 3.7154 5.4311 24 6 5.3315 3.8576 7.1418 25 6 6.5808 3.0348 7.2948 26 8 7.4508 3.4430 8.0350 27 7 6.7824 1.8821 6.6603 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.9108 -0.5223 -4.4375 32 1 2.4157 -2.7377 0.9715 33 1 1.6239 -2.2853 2.5001 34 1 0.6905 -2.3002 0.9846 35 1 2.9540 -1.5777 3.3719 36 1 5.2055 -1.8061 4.5415 37 1 6.7645 -0.6749 6.0632 38 1 3.2364 1.9090 3.7745 39 1 4.5666 3.4901 7.8260 40 1 5.5519 4.9009 7.3675 41 1 7.6285 1.4342 6.8163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880792067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:21 Heat of formation + Delta-G solvation = -5.351594 kcal Electronic energy + Delta-G solvation = -26077.309034 eV Core-core repulsion = 22277.543014 eV Total energy + Delta-G solvation = -3799.766020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99917 -40.28665 -38.78289 -36.35218 -35.37801 -33.98666 -32.63843 -31.45942 -30.54077 -30.34583 -28.42724 -26.44174 -25.17367 -23.73871 -23.55995 -21.50090 -20.84457 -19.41624 -18.60803 -18.19288 -17.63683 -17.47043 -16.55803 -16.46794 -15.91130 -15.54479 -15.25872 -14.94923 -14.55376 -14.41018 -13.99691 -13.81329 -13.52411 -13.43428 -13.29808 -13.04447 -12.79448 -12.60148 -12.28941 -11.92631 -11.88599 -11.73118 -11.37062 -11.22651 -11.15627 -10.73157 -10.42515 -10.19950 -9.97518 -9.70270 -9.62212 -9.54603 -9.33947 -8.68185 -8.15589 -7.84415 -7.58219 -6.19050 -4.20289 0.61507 1.02958 1.14017 1.86770 2.24486 2.56052 2.90282 3.20228 3.28608 3.34960 3.36814 3.71664 3.80208 4.21167 4.31217 4.45305 4.55244 4.83119 4.87294 5.09264 5.11304 5.14247 5.37769 5.50165 5.67029 5.79753 5.81830 6.00565 6.10298 6.17049 6.21899 6.24622 6.26153 6.39867 6.70756 6.73491 6.77620 6.92087 7.22648 7.40699 7.46028 7.56144 8.23986 8.41271 8.81073 8.92943 9.41473 10.93655 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.002772 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.269020 B =10097.798951 C =10780.213662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.245 3.755 3 H 0.065 0.935 4 C -0.530 4.530 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.262 1.262 11 H -0.293 1.293 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.699 3.301 15 O -0.578 6.578 16 N -0.691 5.691 17 C 0.177 3.823 18 C -0.116 4.116 19 C -0.115 4.115 20 C 0.126 3.874 21 C -0.112 4.112 22 C -0.061 4.061 23 S -0.069 6.069 24 C -0.135 4.135 25 C 0.525 3.475 26 O -0.526 6.526 27 N -0.651 5.651 28 H 0.056 0.944 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.266 0.734 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.406 0.594 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.159 0.841 39 H 0.124 0.876 40 H 0.147 0.853 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.966 -0.188 21.502 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.143 3.857 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.330 5.330 13 C -0.058 4.058 14 C 0.401 3.599 15 O -0.455 6.455 16 N -0.341 5.341 17 C 0.078 3.922 18 C -0.140 4.140 19 C -0.137 4.137 20 C 0.025 3.975 21 C -0.228 4.228 22 C -0.087 4.087 23 S 0.171 5.829 24 C -0.286 4.286 25 C 0.310 3.690 26 O -0.403 6.403 27 N -0.295 5.295 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.176 0.824 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.985 1.997 20.765 21.074 hybrid contribution 0.018 -1.174 0.467 1.263 sum 3.002 0.823 21.232 21.459 Atomic orbital electron populations 1.22486 0.99059 1.01100 0.99429 1.19259 0.89777 0.95011 0.81694 0.91678 1.21147 1.32811 1.14382 0.88450 0.90362 1.24855 0.95669 0.96563 0.95592 1.69868 1.45042 1.40223 0.98014 0.86926 0.80366 0.83824 0.77661 1.20383 1.18681 1.22080 1.47189 1.50888 1.11765 1.23127 1.21570 1.02576 0.82962 0.98676 1.15913 0.79569 0.85021 0.79394 1.90879 1.62353 1.15278 1.77009 1.42900 1.48733 1.18771 1.23698 1.17404 0.91050 0.91754 0.92029 1.20751 0.93628 1.00640 0.98942 1.20527 1.01046 0.91170 1.00979 1.17442 0.92650 0.92262 0.95171 1.21183 1.00600 0.96991 1.04005 1.21045 0.98503 0.93607 0.95515 1.86155 1.82236 1.02295 1.12209 1.23822 0.98492 1.05865 1.00421 1.19863 0.89215 0.80543 0.79347 1.90824 1.43859 1.68627 1.36986 1.42985 1.20154 1.22661 1.43658 0.92513 0.94689 0.92979 0.92368 0.92545 0.93377 0.90191 0.75594 0.84599 0.84699 0.82359 0.85815 0.83475 0.75024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.65 37.16 0.32 -2.99 16 2 C 0.24 5.62 2.23 -69.09 -0.15 5.47 16 3 H 0.07 1.68 5.95 -51.93 -0.31 1.37 16 4 C -0.53 -14.16 8.95 -34.44 -0.31 -14.47 16 5 H 0.08 2.26 7.89 -52.48 -0.41 1.84 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 8 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 9 H -0.28 -6.37 6.88 56.52 0.39 -5.98 16 10 H -0.26 -6.23 6.52 56.52 0.37 -5.87 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 N -0.60 -11.35 2.75 -181.01 -0.50 -11.84 16 13 C 0.09 1.23 9.48 59.85 0.57 1.80 16 14 C 0.70 13.03 8.13 -86.92 -0.71 12.33 16 15 O -0.58 -12.89 13.11 5.29 0.07 -12.82 16 16 N -0.69 -9.36 5.22 -14.19 -0.07 -9.44 16 17 C 0.18 2.28 6.31 -83.62 -0.53 1.75 16 18 C -0.12 -1.12 9.94 -39.42 -0.39 -1.52 16 19 C -0.11 -1.01 9.82 -39.35 -0.39 -1.39 16 20 C 0.13 1.32 6.55 -83.59 -0.55 0.77 16 21 C -0.11 -1.41 5.99 -39.00 -0.23 -1.65 16 22 C -0.06 -0.87 8.44 -39.27 -0.33 -1.20 16 23 S -0.07 -0.80 22.27 -107.50 -2.39 -3.20 16 24 C -0.14 -1.19 6.63 35.85 0.24 -0.95 16 25 C 0.52 5.64 7.60 -11.88 -0.09 5.55 16 26 O -0.53 -7.11 17.77 5.54 0.10 -7.01 16 27 N -0.65 -6.24 5.09 -10.23 -0.05 -6.29 16 28 H 0.06 1.06 6.66 -51.93 -0.35 0.71 16 29 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.48 6.30 -51.93 -0.33 0.15 16 34 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 35 H 0.41 4.11 6.52 -40.82 -0.27 3.84 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.16 2.64 6.23 -52.49 -0.33 2.31 16 39 H 0.12 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.15 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.41 3.19 8.59 -40.82 -0.35 2.84 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -34.25 344.04 -8.24 -42.49 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.56 Total: 5.88 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.65 Total: 5.53 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.15 Total: -53.22 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: 0.17 Total: -19.83 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.39 Total: -3.20 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.25 -8.24 -42.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880792067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.140 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds