Wall clock time and date at job start Tue Mar 31 2020 19:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46718 * 2 1 4 4 C 1.50697 * 109.46853 * 240.00446 * 2 1 3 5 5 H 1.08009 * 119.99881 * 239.99913 * 4 2 1 6 6 C 1.37877 * 120.00619 * 59.99803 * 4 2 1 7 7 N 1.31511 * 120.00239 * 179.72866 * 6 4 2 8 8 Si 1.86802 * 119.99643 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47216 * 269.72796 * 8 6 4 10 10 H 1.48504 * 109.46839 * 29.72754 * 8 6 4 11 11 H 1.48495 * 109.47149 * 149.72594 * 8 6 4 12 12 N 1.46494 * 109.47518 * 120.00158 * 2 1 3 13 13 C 1.46505 * 120.00042 * 59.99506 * 12 2 1 14 14 C 1.34779 * 120.00026 * 240.00042 * 12 2 1 15 15 O 1.21591 * 119.99995 * 0.02562 * 14 12 2 16 16 N 1.34777 * 119.99886 * 179.97438 * 14 12 2 17 17 C 1.40097 * 119.99814 * 175.39915 * 16 14 12 18 18 C 1.38891 * 120.10847 * 214.79945 * 17 16 14 19 19 C 1.38028 * 120.34169 * 179.70202 * 18 17 16 20 20 C 1.39068 * 120.34837 * 0.52136 * 19 18 17 21 21 C 1.39546 * 119.15021 * 359.86673 * 20 19 18 22 22 C 1.38486 * 120.50145 * 359.80224 * 21 20 19 23 23 S 1.76445 * 119.36387 * 179.63902 * 21 20 19 24 24 C 1.81706 * 101.81322 * 329.43462 * 23 21 20 25 25 C 1.50373 * 108.98351 * 44.77858 * 24 23 21 26 26 O 1.21300 * 118.28167 * 144.96349 * 25 24 23 27 27 N 1.33109 * 123.44513 * 324.97997 * 25 24 23 28 28 H 1.08997 * 109.47150 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46973 * 299.99844 * 1 2 3 30 30 H 1.08997 * 109.47252 * 59.99869 * 1 2 3 31 31 H 0.97003 * 119.99587 * 180.27287 * 7 6 4 32 32 H 1.08998 * 109.46696 * 90.00089 * 13 12 2 33 33 H 1.08995 * 109.47268 * 209.99818 * 13 12 2 34 34 H 1.08996 * 109.46918 * 330.00793 * 13 12 2 35 35 H 0.96997 * 119.99942 * 355.41132 * 16 14 12 36 36 H 1.07999 * 119.82839 * 359.96844 * 18 17 16 37 37 H 1.08002 * 119.82756 * 180.28526 * 19 18 17 38 38 H 1.07996 * 120.06450 * 180.15609 * 22 21 20 39 39 H 1.09005 * 109.54423 * 284.93020 * 24 23 21 40 40 H 1.09001 * 109.64020 * 164.68296 * 24 23 21 41 41 H 0.96996 * 117.08339 * 179.08006 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 2.1419 -0.8561 -3.5566 8 14 0.6246 1.2791 -2.6541 9 1 -0.8026 0.8722 -2.7064 10 1 0.8420 2.1734 -1.4886 11 1 0.9802 1.9988 -3.9034 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4280 14 6 2.7933 -0.0356 2.0832 15 8 3.0866 1.1287 1.8911 16 7 3.2422 -0.6708 3.1839 17 6 4.1253 -0.0213 4.0563 18 6 5.1170 -0.7427 4.7083 19 6 5.9935 -0.1067 5.5641 20 6 5.8860 1.2612 5.7908 21 6 4.8833 1.9813 5.1402 22 6 4.0082 1.3444 4.2763 23 16 4.7358 3.7154 5.4311 24 6 5.3315 3.8576 7.1418 25 6 6.5808 3.0348 7.2948 26 8 7.4508 3.4430 8.0350 27 7 6.7824 1.8821 6.6603 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.9108 -0.5223 -4.4375 32 1 2.4157 -2.7377 0.9715 33 1 1.6239 -2.2853 2.5001 34 1 0.6905 -2.3002 0.9846 35 1 2.9540 -1.5777 3.3719 36 1 5.2055 -1.8061 4.5415 37 1 6.7645 -0.6749 6.0632 38 1 3.2364 1.9090 3.7745 39 1 4.5666 3.4901 7.8260 40 1 5.5519 4.9009 7.3675 41 1 7.6285 1.4342 6.8163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880792067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:20 Heat of formation + Delta-G solvation = -30.283473 kcal Electronic energy + Delta-G solvation = -26078.390161 eV Core-core repulsion = 22277.543014 eV Total energy + Delta-G solvation = -3800.847147 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97525 -41.43539 -39.83155 -37.66150 -36.68699 -35.26544 -34.41932 -32.32070 -32.15146 -31.16959 -29.43093 -27.74067 -27.11933 -24.71640 -24.59491 -22.91140 -21.69706 -20.81957 -19.74950 -19.10000 -18.95105 -18.54756 -18.27560 -17.48027 -17.23271 -16.75079 -16.45020 -16.10763 -15.86686 -15.63337 -15.07892 -14.80787 -14.75126 -14.57869 -14.34244 -14.24711 -14.09436 -13.94308 -13.73952 -13.49471 -13.11775 -13.01823 -12.76080 -12.53759 -12.27696 -12.11194 -12.03649 -11.57709 -11.37195 -11.29863 -11.07904 -10.84629 -10.78575 -10.49722 -9.49626 -8.99074 -8.51599 -8.34102 -6.38304 -0.24877 0.15498 0.28393 1.01084 1.27375 1.37882 1.41837 1.45845 1.60254 1.81687 2.09137 2.28826 2.65123 2.96062 3.00455 3.02931 3.65655 3.90260 4.10010 4.16093 4.19695 4.29216 4.35085 4.43877 4.56780 4.60646 4.65573 4.74187 4.83141 4.94629 4.96994 5.09524 5.14755 5.29015 5.33452 5.45513 5.50053 5.68922 5.77872 5.97247 6.01062 6.32298 6.64146 6.66261 6.98736 7.25786 7.54280 8.81956 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.020670 B = 0.002772 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.269020 B =10097.798951 C =10780.213662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.248 3.752 3 H 0.032 0.968 4 C -0.524 4.524 5 H 0.046 0.954 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.939 3.061 9 H -0.252 1.252 10 H -0.262 1.262 11 H -0.298 1.298 12 N -0.605 5.605 13 C 0.081 3.919 14 C 0.694 3.306 15 O -0.623 6.623 16 N -0.670 5.670 17 C 0.152 3.848 18 C -0.100 4.100 19 C -0.100 4.100 20 C 0.128 3.872 21 C -0.124 4.124 22 C -0.085 4.085 23 S -0.109 6.109 24 C -0.121 4.121 25 C 0.525 3.475 26 O -0.555 6.555 27 N -0.643 5.643 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.268 0.732 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.424 0.576 36 H 0.172 0.828 37 H 0.177 0.823 38 H 0.124 0.876 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.912 -1.452 24.204 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.145 3.855 3 H 0.050 0.950 4 C -0.563 4.563 5 H 0.064 0.936 6 C -0.175 4.175 7 N -0.580 5.580 8 Si 0.766 3.234 9 H -0.178 1.178 10 H -0.186 1.186 11 H -0.226 1.226 12 N -0.339 5.339 13 C -0.061 4.061 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.322 5.322 17 C 0.054 3.946 18 C -0.122 4.122 19 C -0.122 4.122 20 C 0.027 3.973 21 C -0.239 4.239 22 C -0.110 4.110 23 S 0.132 5.868 24 C -0.272 4.272 25 C 0.311 3.689 26 O -0.434 6.434 27 N -0.286 5.286 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.189 0.811 37 H 0.195 0.805 38 H 0.142 0.858 39 H 0.164 0.836 40 H 0.181 0.819 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.925 0.664 23.522 23.713 hybrid contribution 0.174 -0.834 -0.263 0.892 sum 3.099 -0.170 23.259 23.465 Atomic orbital electron populations 1.22333 0.96511 1.02461 0.99964 1.18870 0.91629 0.93133 0.81916 0.95000 1.21379 1.31596 1.13163 0.90171 0.93565 1.25616 0.97191 0.99361 0.95362 1.69997 1.47146 1.42221 0.98607 0.86014 0.79981 0.80294 0.77098 1.17759 1.18625 1.22615 1.47095 1.51272 1.13415 1.22110 1.21821 1.02242 0.80077 1.01956 1.16098 0.79313 0.84614 0.80361 1.90858 1.63802 1.17438 1.78246 1.42528 1.48331 1.19159 1.22148 1.17662 0.92367 0.91609 0.92935 1.21103 0.91798 1.02094 0.97233 1.20991 1.01055 0.90380 0.99749 1.17578 0.91988 0.93008 0.94714 1.21199 1.01237 0.97074 1.04422 1.20809 0.98919 0.94466 0.96828 1.86269 1.82693 1.02789 1.15085 1.23904 0.98113 1.06736 0.98402 1.20119 0.89287 0.80665 0.78808 1.90820 1.44826 1.69349 1.38408 1.42909 1.20410 1.22413 1.42908 0.90767 0.92443 0.94015 0.92302 0.93156 0.88455 0.90114 0.73473 0.81077 0.80545 0.85809 0.83559 0.81892 0.73800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 8.65 71.98 0.62 -5.46 16 2 C 0.25 11.52 2.23 44.25 0.10 11.61 16 3 H 0.03 1.70 5.95 -2.39 -0.01 1.69 16 4 C -0.52 -28.73 8.95 25.60 0.23 -28.50 16 5 H 0.05 2.76 7.89 -2.91 -0.02 2.74 16 6 C 0.02 1.33 5.45 84.66 0.46 1.79 16 7 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 8 Si 0.94 44.46 24.37 68.60 1.67 46.13 16 9 H -0.25 -10.87 6.88 99.48 0.68 -10.19 16 10 H -0.26 -12.26 6.52 99.48 0.65 -11.61 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 N -0.61 -22.84 2.75 -844.85 -2.33 -25.16 16 13 C 0.08 2.18 9.48 127.77 1.21 3.39 16 14 C 0.69 25.95 8.13 179.05 1.46 27.40 16 15 O -0.62 -28.93 13.11 -4.00 -0.05 -28.98 16 16 N -0.67 -17.17 5.22 -317.06 -1.66 -18.82 16 17 C 0.15 3.70 6.31 38.12 0.24 3.94 16 18 C -0.10 -1.55 9.94 22.38 0.22 -1.33 16 19 C -0.10 -1.34 9.82 22.42 0.22 -1.12 16 20 C 0.13 2.39 6.55 38.44 0.25 2.65 16 21 C -0.12 -3.06 5.99 22.64 0.14 -2.92 16 22 C -0.08 -2.45 8.44 22.47 0.19 -2.26 16 23 S -0.11 -2.54 22.27 -56.49 -1.26 -3.80 16 24 C -0.12 -1.96 6.63 71.13 0.47 -1.48 16 25 C 0.52 10.35 7.60 87.81 0.67 11.01 16 26 O -0.56 -14.13 17.77 -3.09 -0.05 -14.18 16 27 N -0.64 -10.75 5.09 -305.60 -1.56 -12.30 16 28 H 0.07 2.62 6.66 -2.39 -0.02 2.61 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.04 1.72 3.28 -2.39 -0.01 1.71 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.61 6.30 -2.39 -0.02 1.59 16 34 H 0.08 2.16 6.43 -2.39 -0.02 2.15 16 35 H 0.42 7.29 6.52 -92.71 -0.60 6.68 16 36 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 38 H 0.12 4.44 6.23 -2.91 -0.02 4.43 16 39 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.42 5.27 8.59 -92.71 -0.80 4.47 16 Total: -1.00 -79.57 344.04 1.18 -78.39 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -0.37 Total: 16.78 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.48 Total: 18.73 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -5.24 Total: -113.06 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -0.11 Total: -43.16 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.67 Total: 46.13 kcal Atomic # 16 Polarization: -2.54 SS G_CDS: -1.26 Total: -3.80 kcal Total: -79.57 1.18 -78.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880792067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.105 kcal (2) G-P(sol) polarization free energy of solvation -79.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds