Wall clock time and date at job start Tue Mar 31 2020 19:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47132 * 2 1 4 4 C 1.50709 * 109.47167 * 119.99558 * 2 1 3 5 5 H 1.08000 * 119.99604 * 120.00077 * 4 2 1 6 6 C 1.37872 * 119.99945 * 300.00004 * 4 2 1 7 7 N 1.31510 * 120.00211 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99643 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47196 * 90.00413 * 8 6 4 10 10 H 1.48504 * 109.46906 * 210.00210 * 8 6 4 11 11 H 1.48499 * 109.47222 * 329.99899 * 8 6 4 12 12 N 1.46493 * 109.47163 * 239.99865 * 2 1 3 13 13 C 1.46504 * 119.99864 * 299.99850 * 12 2 1 14 14 C 1.34772 * 120.00133 * 120.00060 * 12 2 1 15 15 O 1.21591 * 120.00388 * 359.97438 * 14 12 2 16 16 N 1.34784 * 120.00442 * 179.97438 * 14 12 2 17 17 C 1.40098 * 120.00509 * 184.59974 * 16 14 12 18 18 C 1.38891 * 120.10690 * 144.95899 * 17 16 14 19 19 C 1.38023 * 120.34111 * 179.89362 * 18 17 16 20 20 C 1.39066 * 120.34610 * 0.02562 * 19 18 17 21 21 C 1.39536 * 119.15762 * 0.11248 * 20 19 18 22 22 C 1.38484 * 120.50039 * 359.81267 * 21 20 19 23 23 S 1.76442 * 119.36877 * 179.68536 * 21 20 19 24 24 C 1.81733 * 101.80861 * 329.50135 * 23 21 20 25 25 C 1.50366 * 108.96762 * 44.80569 * 24 23 21 26 26 O 1.21306 * 118.28140 * 144.94333 * 25 24 23 27 27 N 1.33102 * 123.43561 * 324.89755 * 25 24 23 28 28 H 1.09007 * 109.47426 * 300.00227 * 1 2 3 29 29 H 1.08996 * 109.47407 * 59.99898 * 1 2 3 30 30 H 1.09005 * 109.47417 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99785 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.47035 * 269.99562 * 13 12 2 33 33 H 1.08993 * 109.47039 * 29.99794 * 13 12 2 34 34 H 1.09003 * 109.46822 * 150.00525 * 13 12 2 35 35 H 0.97003 * 119.99708 * 4.60549 * 16 14 12 36 36 H 1.07999 * 119.82518 * 359.90999 * 18 17 16 37 37 H 1.08000 * 119.82637 * 180.02562 * 19 18 17 38 38 H 1.07994 * 120.06840 * 180.39336 * 22 21 20 39 39 H 1.09003 * 109.55336 * 164.64953 * 24 23 21 40 40 H 1.08998 * 109.55268 * 284.85387 * 24 23 21 41 41 H 0.97000 * 117.08260 * 179.13323 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5661 3.7121 12 7 2.0182 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4279 14 6 2.7931 -0.0357 -2.0833 15 8 3.0865 1.1286 -1.8912 16 7 3.2428 -0.6712 -3.1835 17 6 4.1259 -0.0217 -4.0559 18 6 5.1214 -0.7420 -4.7033 19 6 5.9926 -0.1075 -5.5655 20 6 5.8831 1.2598 -5.7946 21 6 4.8836 1.9809 -5.1402 22 6 4.0085 1.3440 -4.2763 23 16 4.7449 3.7174 -5.4204 24 6 6.4708 4.1795 -5.7529 25 6 7.0732 3.1739 -6.6946 26 8 7.8784 3.5639 -7.5137 27 7 6.7698 1.8780 -6.6760 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7081 1.1610 3.4844 32 1 2.4157 -2.7377 -0.9715 33 1 0.6904 -2.3002 -0.9845 34 1 1.6238 -2.2853 -2.5001 35 1 2.9550 -1.5783 -3.3713 36 1 5.2140 -1.8042 -4.5314 37 1 6.7634 -0.6758 -6.0649 38 1 3.2335 1.9077 -3.7784 39 1 6.5022 5.1696 -6.2076 40 1 7.0323 4.1890 -4.8188 41 1 7.2040 1.3133 -7.3343 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880792068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:23 Heat of formation + Delta-G solvation = -14.218945 kcal Electronic energy + Delta-G solvation = -26033.904729 eV Core-core repulsion = 22233.754192 eV Total energy + Delta-G solvation = -3800.150537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94235 -40.17870 -38.68804 -36.20702 -35.23202 -33.89534 -32.69544 -31.40438 -30.36383 -29.65083 -28.21086 -26.27944 -25.25479 -23.67739 -23.45146 -21.34792 -20.78984 -19.35090 -18.55928 -18.13584 -17.56807 -17.24199 -16.44285 -16.37811 -15.76047 -15.22666 -15.15496 -14.93932 -14.59538 -14.16377 -13.91553 -13.76710 -13.46949 -13.44682 -13.16426 -12.74041 -12.69331 -12.66825 -11.84085 -11.66384 -11.60199 -11.32559 -11.11532 -11.05045 -10.88038 -10.75949 -10.43104 -10.29698 -10.20878 -9.86935 -9.57975 -9.40169 -9.20812 -8.47332 -8.04666 -7.70826 -7.52739 -6.11488 -4.19541 0.65535 1.07626 1.23165 1.90874 2.28885 2.60509 3.02794 3.24506 3.31455 3.32626 3.37189 3.82690 3.85564 4.29285 4.42726 4.50297 4.62475 4.88059 4.95271 5.14804 5.17029 5.20248 5.45264 5.56078 5.72434 5.84910 5.90650 6.08910 6.17145 6.27774 6.31080 6.64536 6.74116 6.76505 6.91698 6.99633 7.06542 7.38336 7.49893 7.63326 7.73468 7.99722 8.15147 8.52477 8.80612 9.08370 9.47388 10.93862 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.002668 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.461121 B =10491.571391 C =10890.001989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.601 5.601 13 C 0.086 3.914 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.694 5.694 17 C 0.178 3.822 18 C -0.118 4.118 19 C -0.116 4.116 20 C 0.125 3.875 21 C -0.112 4.112 22 C -0.061 4.061 23 S -0.074 6.074 24 C -0.134 4.134 25 C 0.526 3.474 26 O -0.527 6.527 27 N -0.651 5.651 28 H 0.095 0.905 29 H 0.012 0.988 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.045 0.955 35 H 0.405 0.595 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.126 0.874 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -3.263 -17.194 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.336 5.336 13 C -0.058 4.058 14 C 0.397 3.603 15 O -0.453 6.453 16 N -0.344 5.344 17 C 0.079 3.921 18 C -0.141 4.141 19 C -0.138 4.138 20 C 0.024 3.976 21 C -0.227 4.227 22 C -0.086 4.086 23 S 0.167 5.833 24 C -0.285 4.285 25 C 0.311 3.689 26 O -0.404 6.404 27 N -0.294 5.294 28 H 0.114 0.886 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.242 0.758 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.166 0.834 40 H 0.144 0.856 41 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.084 -1.077 -17.064 18.148 hybrid contribution 1.391 -2.218 0.680 2.705 sum 7.475 -3.295 -16.384 18.307 Atomic orbital electron populations 1.22123 0.98157 0.99395 1.01004 1.18928 0.90680 0.94347 0.78835 0.91599 1.21310 1.31924 1.13082 0.90257 0.92308 1.24877 0.94912 0.94984 0.98947 1.69871 1.36204 1.22588 1.23843 0.86491 0.78683 0.79810 0.82359 1.20599 1.21104 1.19969 1.47628 1.50588 1.11593 1.23749 1.21524 1.02291 0.83455 0.98517 1.16003 0.79758 0.85130 0.79403 1.90884 1.62358 1.15169 1.76913 1.42988 1.48773 1.18722 1.23904 1.17418 0.91057 0.91688 0.91950 1.20755 0.93881 1.00567 0.98895 1.20515 1.00798 0.91708 1.00807 1.17439 0.92617 0.92466 0.95079 1.21205 1.00459 0.97075 1.03964 1.21055 0.99396 0.94012 0.94185 1.86003 1.07471 1.01410 1.88424 1.23815 0.98332 1.02619 1.03686 1.19875 0.81419 0.82494 0.85097 1.90821 1.33777 1.77689 1.38091 1.42977 1.43267 1.08884 1.34317 0.88632 0.96862 0.95095 0.92615 0.93108 0.90277 0.93657 0.75763 0.84714 0.84785 0.82330 0.83445 0.85619 0.75101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.15 0.33 -3.05 16 2 C 0.27 6.65 2.64 -69.09 -0.18 6.47 16 3 H 0.07 1.88 6.90 -51.92 -0.36 1.53 16 4 C -0.53 -13.77 8.37 -34.44 -0.29 -14.06 16 5 H 0.06 1.52 7.65 -52.49 -0.40 1.11 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.60 -11.99 2.75 -181.00 -0.50 -12.49 16 13 C 0.09 1.29 9.48 59.85 0.57 1.86 16 14 C 0.70 13.56 8.13 -86.92 -0.71 12.86 16 15 O -0.58 -13.42 13.11 5.29 0.07 -13.35 16 16 N -0.69 -9.89 5.22 -14.19 -0.07 -9.96 16 17 C 0.18 2.40 6.31 -83.62 -0.53 1.87 16 18 C -0.12 -1.19 9.94 -39.42 -0.39 -1.58 16 19 C -0.12 -1.06 9.82 -39.35 -0.39 -1.44 16 20 C 0.12 1.36 6.55 -83.59 -0.55 0.81 16 21 C -0.11 -1.46 5.99 -39.01 -0.23 -1.70 16 22 C -0.06 -0.91 8.43 -39.27 -0.33 -1.24 16 23 S -0.07 -0.89 22.27 -107.50 -2.39 -3.28 16 24 C -0.13 -1.32 6.63 35.84 0.24 -1.08 16 25 C 0.53 5.94 7.60 -11.89 -0.09 5.85 16 26 O -0.53 -7.32 17.77 5.54 0.10 -7.22 16 27 N -0.65 -6.43 5.09 -10.24 -0.05 -6.48 16 28 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.03 0.64 6.66 -51.93 -0.35 0.30 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.04 0.49 6.30 -51.93 -0.33 0.17 16 35 H 0.40 4.39 6.52 -40.82 -0.27 4.12 16 36 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.16 2.79 6.24 -52.49 -0.33 2.47 16 39 H 0.15 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.41 3.20 8.59 -40.82 -0.35 2.85 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -32.50 350.87 -9.30 -41.79 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -4.70 Total: 6.80 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -2.64 Total: 7.22 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.00 Total: -52.80 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.17 Total: -20.57 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.39 Total: -3.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.50 -9.30 -41.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880792068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.575 kcal (2) G-P(sol) polarization free energy of solvation -32.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds