Wall clock time and date at job start Tue Mar 31 2020 19:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47132 * 2 1 4 4 C 1.50709 * 109.47167 * 119.99558 * 2 1 3 5 5 H 1.08000 * 119.99604 * 120.00077 * 4 2 1 6 6 C 1.37872 * 119.99945 * 300.00004 * 4 2 1 7 7 N 1.31510 * 120.00211 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99643 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47196 * 90.00413 * 8 6 4 10 10 H 1.48504 * 109.46906 * 210.00210 * 8 6 4 11 11 H 1.48499 * 109.47222 * 329.99899 * 8 6 4 12 12 N 1.46493 * 109.47163 * 239.99865 * 2 1 3 13 13 C 1.46504 * 119.99864 * 299.99850 * 12 2 1 14 14 C 1.34772 * 120.00133 * 120.00060 * 12 2 1 15 15 O 1.21591 * 120.00388 * 359.97438 * 14 12 2 16 16 N 1.34784 * 120.00442 * 179.97438 * 14 12 2 17 17 C 1.40098 * 120.00509 * 184.59974 * 16 14 12 18 18 C 1.38891 * 120.10690 * 144.95899 * 17 16 14 19 19 C 1.38023 * 120.34111 * 179.89362 * 18 17 16 20 20 C 1.39066 * 120.34610 * 0.02562 * 19 18 17 21 21 C 1.39536 * 119.15762 * 0.11248 * 20 19 18 22 22 C 1.38484 * 120.50039 * 359.81267 * 21 20 19 23 23 S 1.76442 * 119.36877 * 179.68536 * 21 20 19 24 24 C 1.81733 * 101.80861 * 329.50135 * 23 21 20 25 25 C 1.50366 * 108.96762 * 44.80569 * 24 23 21 26 26 O 1.21306 * 118.28140 * 144.94333 * 25 24 23 27 27 N 1.33102 * 123.43561 * 324.89755 * 25 24 23 28 28 H 1.09007 * 109.47426 * 300.00227 * 1 2 3 29 29 H 1.08996 * 109.47407 * 59.99898 * 1 2 3 30 30 H 1.09005 * 109.47417 * 180.02562 * 1 2 3 31 31 H 0.97003 * 119.99785 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.47035 * 269.99562 * 13 12 2 33 33 H 1.08993 * 109.47039 * 29.99794 * 13 12 2 34 34 H 1.09003 * 109.46822 * 150.00525 * 13 12 2 35 35 H 0.97003 * 119.99708 * 4.60549 * 16 14 12 36 36 H 1.07999 * 119.82518 * 359.90999 * 18 17 16 37 37 H 1.08000 * 119.82637 * 180.02562 * 19 18 17 38 38 H 1.07994 * 120.06840 * 180.39336 * 22 21 20 39 39 H 1.09003 * 109.55336 * 164.64953 * 24 23 21 40 40 H 1.08998 * 109.55268 * 284.85387 * 24 23 21 41 41 H 0.97000 * 117.08260 * 179.13323 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5457 4.4124 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5661 3.7121 12 7 2.0182 -0.6906 -1.1961 13 6 1.6643 -2.0932 -1.4279 14 6 2.7931 -0.0357 -2.0833 15 8 3.0865 1.1286 -1.8912 16 7 3.2428 -0.6712 -3.1835 17 6 4.1259 -0.0217 -4.0559 18 6 5.1214 -0.7420 -4.7033 19 6 5.9926 -0.1075 -5.5655 20 6 5.8831 1.2598 -5.7946 21 6 4.8836 1.9809 -5.1402 22 6 4.0085 1.3440 -4.2763 23 16 4.7449 3.7174 -5.4204 24 6 6.4708 4.1795 -5.7529 25 6 7.0732 3.1739 -6.6946 26 8 7.8784 3.5639 -7.5137 27 7 6.7698 1.8780 -6.6760 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7081 1.1610 3.4844 32 1 2.4157 -2.7377 -0.9715 33 1 0.6904 -2.3002 -0.9845 34 1 1.6238 -2.2853 -2.5001 35 1 2.9550 -1.5783 -3.3713 36 1 5.2140 -1.8042 -4.5314 37 1 6.7634 -0.6758 -6.0649 38 1 3.2335 1.9077 -3.7784 39 1 6.5022 5.1696 -6.2076 40 1 7.0323 4.1890 -4.8188 41 1 7.2040 1.3133 -7.3343 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880792068.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:23 Heat of formation + Delta-G solvation = -36.058521 kcal Electronic energy + Delta-G solvation = -26034.851764 eV Core-core repulsion = 22233.754192 eV Total energy + Delta-G solvation = -3801.097572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94634 -41.39496 -39.79483 -37.53910 -36.64080 -35.25596 -34.36630 -32.30775 -31.40717 -31.13707 -29.33632 -27.63823 -27.25091 -24.63739 -24.58124 -22.84177 -21.69472 -20.81516 -19.71411 -19.08396 -18.68647 -18.51211 -18.14191 -17.40117 -17.10865 -16.58296 -16.51625 -16.07046 -15.86357 -15.51325 -15.01098 -14.84131 -14.62507 -14.40821 -14.30591 -14.19197 -14.03466 -13.67948 -13.45971 -13.02899 -12.92621 -12.78062 -12.69517 -12.58903 -12.29796 -12.15238 -12.08373 -12.06296 -11.37217 -11.17803 -11.06897 -10.79060 -10.51256 -10.47207 -9.41502 -8.93936 -8.53178 -8.12336 -6.28568 -0.25851 0.14740 0.32150 0.99846 1.40046 1.43168 1.44315 1.53773 1.68005 1.83016 2.14366 2.43319 2.66965 2.98904 3.07767 3.16155 3.65182 3.87654 4.11267 4.16567 4.20288 4.31631 4.37265 4.62285 4.66744 4.79417 4.84581 4.91256 4.95650 5.03609 5.07952 5.19703 5.32357 5.45102 5.47372 5.56790 5.68826 5.78851 5.99810 6.00821 6.17137 6.25876 6.66062 6.79347 7.09424 7.38767 7.63772 8.91837 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019515 B = 0.002668 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.461121 B =10491.571391 C =10890.001989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.279 3.721 3 H 0.011 0.989 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.284 1.284 10 H -0.282 1.282 11 H -0.260 1.260 12 N -0.611 5.611 13 C 0.081 3.919 14 C 0.690 3.310 15 O -0.625 6.625 16 N -0.672 5.672 17 C 0.153 3.847 18 C -0.098 4.098 19 C -0.099 4.099 20 C 0.129 3.871 21 C -0.125 4.125 22 C -0.087 4.087 23 S -0.109 6.109 24 C -0.124 4.124 25 C 0.527 3.473 26 O -0.553 6.553 27 N -0.640 5.640 28 H 0.068 0.932 29 H 0.019 0.981 30 H 0.050 0.950 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.423 0.577 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.119 0.881 39 H 0.166 0.834 40 H 0.137 0.863 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.413 -6.431 -18.620 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.176 3.824 3 H 0.029 0.971 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.788 3.212 9 H -0.210 1.210 10 H -0.207 1.207 11 H -0.184 1.184 12 N -0.344 5.344 13 C -0.061 4.061 14 C 0.392 3.608 15 O -0.506 6.506 16 N -0.324 5.324 17 C 0.055 3.945 18 C -0.121 4.121 19 C -0.121 4.121 20 C 0.028 3.972 21 C -0.240 4.240 22 C -0.112 4.112 23 S 0.131 5.869 24 C -0.274 4.274 25 C 0.313 3.687 26 O -0.432 6.432 27 N -0.284 5.284 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.264 0.736 36 H 0.191 0.809 37 H 0.197 0.803 38 H 0.137 0.863 39 H 0.183 0.817 40 H 0.155 0.845 41 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.864 -4.327 -18.550 20.607 hybrid contribution 0.889 -1.200 1.019 1.808 sum 8.753 -5.527 -17.531 20.359 Atomic orbital electron populations 1.21904 0.97145 1.00241 0.99966 1.18452 0.91366 0.91982 0.80578 0.97148 1.21587 1.31770 1.13061 0.91064 0.92020 1.25708 0.95118 0.95653 1.01965 1.70021 1.37314 1.23953 1.24386 0.85483 0.77687 0.79294 0.78699 1.21024 1.20729 1.18431 1.47451 1.50914 1.13406 1.22667 1.21795 1.02188 0.80417 1.01690 1.16188 0.79581 0.84653 0.80417 1.90862 1.63946 1.17526 1.78218 1.42573 1.48431 1.19105 1.22256 1.17681 0.92454 0.91473 0.92882 1.21121 0.91809 1.02084 0.97069 1.21005 1.00786 0.90794 0.99498 1.17574 0.91831 0.93247 0.94593 1.21217 1.01149 0.97149 1.04465 1.20782 0.99789 0.94998 0.95678 1.86105 1.10069 1.02227 1.88488 1.23897 0.96229 1.03163 1.04143 1.20016 0.80931 0.82998 0.84743 1.90818 1.35088 1.78165 1.39132 1.42864 1.42649 1.08712 1.34200 0.91372 0.96148 0.93129 0.92691 0.92299 0.90632 0.89103 0.73568 0.80890 0.80342 0.86308 0.81668 0.84463 0.73591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.28 8.95 71.98 0.64 -5.63 16 2 C 0.28 14.11 2.64 44.25 0.12 14.22 16 3 H 0.01 0.65 6.90 -2.38 -0.02 0.63 16 4 C -0.54 -28.39 8.37 25.60 0.21 -28.17 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.02 0.81 5.30 84.65 0.45 1.26 16 7 N -0.92 -52.30 11.32 21.44 0.24 -52.05 16 8 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 12 N -0.61 -24.46 2.75 -844.83 -2.33 -26.79 16 13 C 0.08 2.26 9.48 127.77 1.21 3.48 16 14 C 0.69 27.47 8.13 179.05 1.46 28.92 16 15 O -0.62 -31.06 13.11 -4.00 -0.05 -31.11 16 16 N -0.67 -18.32 5.22 -317.05 -1.66 -19.97 16 17 C 0.15 3.94 6.31 38.12 0.24 4.18 16 18 C -0.10 -1.58 9.94 22.38 0.22 -1.36 16 19 C -0.10 -1.37 9.82 22.42 0.22 -1.15 16 20 C 0.13 2.51 6.55 38.44 0.25 2.76 16 21 C -0.12 -3.26 5.99 22.64 0.14 -3.12 16 22 C -0.09 -2.69 8.43 22.47 0.19 -2.50 16 23 S -0.11 -2.74 22.27 -56.49 -1.26 -3.99 16 24 C -0.12 -2.35 6.63 71.13 0.47 -1.87 16 25 C 0.53 11.08 7.60 87.81 0.67 11.75 16 26 O -0.55 -14.54 17.77 -3.11 -0.06 -14.59 16 27 N -0.64 -11.05 5.09 -305.61 -1.56 -12.61 16 28 H 0.07 3.58 6.07 -2.38 -0.01 3.57 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 2.11 6.66 -2.38 -0.02 2.10 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.07 2.17 6.43 -2.39 -0.02 2.15 16 34 H 0.09 1.66 6.30 -2.39 -0.02 1.64 16 35 H 0.42 7.87 6.52 -92.71 -0.60 7.26 16 36 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 37 H 0.18 0.97 8.06 -2.91 -0.02 0.94 16 38 H 0.12 4.63 6.24 -2.91 -0.02 4.61 16 39 H 0.17 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.42 5.17 8.59 -92.71 -0.80 4.38 16 Total: -1.00 -76.37 350.87 1.56 -74.81 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.29 Total: 19.24 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 6.49 Total: 22.77 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -5.30 Total: -111.42 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.11 Total: -45.70 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: -2.74 SS G_CDS: -1.26 Total: -3.99 kcal Total: -76.37 1.56 -74.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880792068.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.751 kcal (2) G-P(sol) polarization free energy of solvation -76.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds