Wall clock time and date at job start Tue Mar 31 2020 19:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47215 * 2 1 4 4 O 1.21278 * 119.99967 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99574 * 179.97438 * 3 2 1 6 6 C 1.47049 * 122.50297 * 357.91895 * 5 3 2 7 7 S 1.83567 * 104.98064 * 175.98359 * 6 5 3 8 8 C 1.84242 * 94.85951 * 341.48849 * 7 6 5 9 9 C 1.46137 * 122.49166 * 177.94576 * 5 3 2 10 10 H 1.08999 * 109.47242 * 90.69366 * 9 5 3 11 11 C 1.50703 * 109.47223 * 330.69686 * 9 5 3 12 12 O 1.21268 * 119.99852 * 331.67326 * 11 9 5 13 13 N 1.34776 * 119.99907 * 151.67226 * 11 9 5 14 14 C 1.39268 * 119.99759 * 184.75457 * 13 11 9 15 15 C 1.39672 * 119.57143 * 174.88757 * 14 13 11 16 16 C 1.38663 * 119.49466 * 180.02562 * 15 14 13 17 17 C 1.38344 * 118.66503 * 359.97438 * 16 15 14 18 18 C 1.40575 * 119.13705 * 0.02562 * 17 16 15 19 19 C 1.41332 * 119.79140 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00117 * 0.02562 * 19 18 17 21 21 C 1.40025 * 120.00076 * 179.97438 * 19 18 17 22 22 N 1.30749 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00143 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47267 * 90.00433 * 23 21 19 25 25 H 1.48498 * 109.47230 * 210.00397 * 23 21 19 26 26 H 1.48504 * 109.47115 * 330.00439 * 23 21 19 27 27 N 1.31899 * 119.57830 * 354.61719 * 14 13 11 28 28 H 1.09004 * 109.47243 * 300.00432 * 1 2 3 29 29 H 1.09004 * 109.47112 * 60.00018 * 1 2 3 30 30 H 1.08997 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47680 * 239.99786 * 2 1 3 32 32 H 1.09004 * 109.47112 * 119.99982 * 2 1 3 33 33 H 1.09001 * 110.33987 * 57.10396 * 6 5 3 34 34 H 1.09003 * 110.33984 * 294.85870 * 6 5 3 35 35 H 1.09004 * 111.34732 * 150.78107 * 8 7 6 36 36 H 1.08997 * 111.35196 * 275.51242 * 8 7 6 37 37 H 0.97003 * 120.00210 * 4.75732 * 13 11 9 38 38 H 1.08000 * 120.25289 * 0.02562 * 15 14 13 39 39 H 1.07997 * 120.66532 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.42720 * 180.02562 * 17 16 15 41 41 H 0.96993 * 120.00220 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3607 0.5928 0.0461 7 16 5.9786 1.4482 -0.0974 8 6 5.2715 3.0056 -0.7822 9 6 3.9043 3.0215 -0.0436 10 1 4.0447 3.3900 0.9725 11 6 2.9482 3.9256 -0.7782 12 8 2.2184 3.4700 -1.6329 13 7 2.9042 5.2404 -0.4851 14 6 1.9536 6.0575 -1.0919 15 6 1.8452 7.3947 -0.7033 16 6 0.8978 8.2068 -1.3081 17 6 0.0839 7.6625 -2.2855 18 6 0.2420 6.3094 -2.6325 19 6 -0.5824 5.7390 -3.6287 20 1 -1.3307 6.3424 -4.1210 21 6 -0.4284 4.3919 -3.9781 22 7 0.4779 3.6615 -3.3825 23 14 -1.5175 3.6381 -5.2953 24 1 -0.8722 3.7990 -6.6230 25 1 -1.7110 2.1936 -5.0108 26 1 -2.8354 4.3227 -5.2993 27 7 1.1709 5.5602 -2.0299 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2194 -0.0932 -0.7890 34 1 4.2985 0.0563 0.9929 35 1 5.8787 3.8696 -0.5117 36 1 5.1384 2.9399 -1.8620 37 1 3.5346 5.6175 0.1483 38 1 2.4943 7.7932 0.0624 39 1 0.7974 9.2433 -1.0220 40 1 -0.6632 8.2693 -2.7755 41 1 0.5844 2.7282 -3.6243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882475807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:53 Heat of formation + Delta-G solvation = 13.182617 kcal Electronic energy + Delta-G solvation = -27817.212863 eV Core-core repulsion = 24018.250547 eV Total energy + Delta-G solvation = -3798.962316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.38859 -38.72862 -37.30502 -35.90309 -34.02900 -32.95031 -32.77464 -31.09626 -30.22184 -28.89342 -27.30954 -25.55989 -25.05441 -23.49027 -21.72657 -21.11235 -19.90915 -18.78276 -17.80548 -17.16707 -17.12082 -16.61139 -16.00800 -15.36847 -15.06401 -14.59302 -14.42871 -14.37851 -14.11224 -13.77663 -13.50988 -13.30702 -13.08545 -12.95796 -12.68041 -12.44210 -12.22463 -12.10945 -11.86941 -11.71569 -11.52497 -11.13506 -11.01137 -10.91339 -10.72745 -10.59927 -10.41940 -9.88668 -9.68329 -9.31831 -9.13708 -8.91859 -8.60034 -8.05699 -7.89181 -7.12437 -6.88855 -6.06977 -4.33026 1.39891 1.77288 2.64284 2.83633 2.97281 3.13509 3.18826 3.21786 3.31196 3.65969 3.84790 4.10371 4.39065 4.70392 4.76586 4.88098 4.95845 5.00641 5.11919 5.16567 5.22752 5.27028 5.55717 5.57270 5.85142 6.07176 6.10683 6.13736 6.18984 6.44996 6.54147 6.73258 6.88808 6.90800 7.28262 7.29715 7.60845 7.68421 7.87139 8.10229 8.25966 8.43881 8.51040 8.81018 9.11453 9.32538 10.31984 10.53965 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.005187 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.003559 B = 5396.735394 C = 6868.333167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.515 3.485 4 O -0.468 6.468 5 N -0.615 5.615 6 C 0.161 3.839 7 S -0.272 6.272 8 C -0.060 4.060 9 C 0.115 3.885 10 H 0.094 0.906 11 C 0.477 3.523 12 O -0.371 6.371 13 N -0.663 5.663 14 C 0.377 3.623 15 C -0.358 4.358 16 C -0.036 4.036 17 C -0.307 4.307 18 C 0.272 3.728 19 C -0.425 4.425 20 H 0.081 0.919 21 C 0.058 3.942 22 N -0.646 5.646 23 Si 0.893 3.107 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.264 1.264 27 N -0.467 5.467 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.425 -9.160 7.612 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.302 3.698 4 O -0.337 6.337 5 N -0.355 5.355 6 C -0.073 4.073 7 S -0.045 6.045 8 C -0.209 4.209 9 C 0.005 3.995 10 H 0.111 0.889 11 C 0.254 3.746 12 O -0.231 6.231 13 N -0.311 5.311 14 C 0.138 3.862 15 C -0.384 4.384 16 C -0.061 4.061 17 C -0.330 4.330 18 C 0.147 3.853 19 C -0.456 4.456 20 H 0.099 0.901 21 C -0.171 4.171 22 N -0.264 5.264 23 Si 0.717 3.283 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.188 1.188 27 N -0.186 5.186 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.126 0.874 37 H 0.229 0.771 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.676 -10.573 6.971 15.937 hybrid contribution -1.045 1.034 -0.127 1.475 sum 8.631 -9.540 6.844 14.572 Atomic orbital electron populations 1.21523 0.92787 1.01138 1.03961 1.21572 0.98831 0.93431 1.03476 1.20581 0.80294 0.92326 0.76629 1.90950 1.53391 1.45398 1.43998 1.48129 1.05851 1.03972 1.77552 1.23814 0.86203 0.91979 1.05304 1.88088 1.13363 1.18482 1.84572 1.24698 0.95363 0.96934 1.03945 1.21745 0.92639 0.84791 1.00285 0.88859 1.19977 0.85671 0.82723 0.86187 1.91156 1.33985 1.72119 1.25818 1.43213 1.34600 1.07848 1.45438 1.18521 0.89442 0.86354 0.91846 1.20471 1.10815 0.94636 1.12500 1.20538 0.94025 0.96841 0.94670 1.21609 1.06927 0.97882 1.06618 1.18373 0.89090 0.87344 0.90535 1.19543 1.15007 0.94921 1.16109 0.90125 1.26151 0.96016 0.97842 0.97128 1.70341 1.21638 1.06249 1.28173 0.86572 0.81380 0.78747 0.81584 1.19777 1.20427 1.18784 1.68677 1.06952 1.34260 1.08693 0.92137 0.91307 0.92443 0.89240 0.89622 0.88648 0.88132 0.85550 0.87385 0.77126 0.89230 0.88750 0.88713 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.20 37.16 0.34 -1.49 16 2 C -0.13 -1.60 5.37 -27.88 -0.15 -1.75 16 3 C 0.52 8.54 6.95 -10.98 -0.08 8.47 16 4 O -0.47 -10.44 12.63 -19.13 -0.24 -10.68 16 5 N -0.61 -8.62 3.13 -168.89 -0.53 -9.14 16 6 C 0.16 1.62 6.85 60.15 0.41 2.03 16 7 S -0.27 -2.91 23.32 -107.50 -2.51 -5.42 16 8 C -0.06 -0.71 7.04 38.43 0.27 -0.44 16 9 C 0.12 1.66 3.26 -68.00 -0.22 1.44 16 10 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 11 C 0.48 9.59 5.46 -10.98 -0.06 9.53 16 12 O -0.37 -9.18 9.63 -19.12 -0.18 -9.37 16 13 N -0.66 -13.26 5.38 -11.40 -0.06 -13.32 16 14 C 0.38 9.41 7.43 -154.98 -1.15 8.26 16 15 C -0.36 -8.27 9.95 -38.89 -0.39 -8.65 16 16 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 17 C -0.31 -7.97 9.83 -38.66 -0.38 -8.35 16 18 C 0.27 7.83 6.55 -85.00 -0.56 7.27 16 19 C -0.43 -11.99 9.14 -37.74 -0.34 -12.34 16 20 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 21 C 0.06 1.56 5.50 -17.34 -0.10 1.47 16 22 N -0.65 -18.12 8.99 55.55 0.50 -17.62 16 23 Si 0.89 19.71 29.56 -169.99 -5.02 14.69 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 27 N -0.47 -13.36 5.74 -10.26 -0.06 -13.42 16 28 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 29 H 0.07 1.15 8.10 -51.93 -0.42 0.72 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.86 7.99 -51.93 -0.42 0.44 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.13 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 37 H 0.40 6.05 8.70 -40.82 -0.36 5.69 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.09 2.29 8.06 -52.48 -0.42 1.86 16 41 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -35.90 352.42 -10.97 -46.87 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.38 Total: 7.90 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -2.80 Total: 4.20 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.15 Total: -53.50 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.43 Total: -20.05 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.51 Total: -5.42 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.90 -10.97 -46.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.057 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds