Wall clock time and date at job start Tue Mar 31 2020 19:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47215 * 2 1 4 4 O 1.21278 * 119.99967 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99574 * 179.97438 * 3 2 1 6 6 C 1.47049 * 122.50297 * 357.91895 * 5 3 2 7 7 S 1.83567 * 104.98064 * 175.98359 * 6 5 3 8 8 C 1.84242 * 94.85951 * 341.48849 * 7 6 5 9 9 C 1.46137 * 122.49166 * 177.94576 * 5 3 2 10 10 H 1.08999 * 109.47242 * 90.69366 * 9 5 3 11 11 C 1.50703 * 109.47223 * 330.69686 * 9 5 3 12 12 O 1.21268 * 119.99852 * 331.67326 * 11 9 5 13 13 N 1.34776 * 119.99907 * 151.67226 * 11 9 5 14 14 C 1.39268 * 119.99759 * 184.75457 * 13 11 9 15 15 C 1.39672 * 119.57143 * 174.88757 * 14 13 11 16 16 C 1.38663 * 119.49466 * 180.02562 * 15 14 13 17 17 C 1.38344 * 118.66503 * 359.97438 * 16 15 14 18 18 C 1.40575 * 119.13705 * 0.02562 * 17 16 15 19 19 C 1.41332 * 119.79140 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00117 * 0.02562 * 19 18 17 21 21 C 1.40025 * 120.00076 * 179.97438 * 19 18 17 22 22 N 1.30749 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00143 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47267 * 90.00433 * 23 21 19 25 25 H 1.48498 * 109.47230 * 210.00397 * 23 21 19 26 26 H 1.48504 * 109.47115 * 330.00439 * 23 21 19 27 27 N 1.31899 * 119.57830 * 354.61719 * 14 13 11 28 28 H 1.09004 * 109.47243 * 300.00432 * 1 2 3 29 29 H 1.09004 * 109.47112 * 60.00018 * 1 2 3 30 30 H 1.08997 * 109.47323 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47680 * 239.99786 * 2 1 3 32 32 H 1.09004 * 109.47112 * 119.99982 * 2 1 3 33 33 H 1.09001 * 110.33987 * 57.10396 * 6 5 3 34 34 H 1.09003 * 110.33984 * 294.85870 * 6 5 3 35 35 H 1.09004 * 111.34732 * 150.78107 * 8 7 6 36 36 H 1.08997 * 111.35196 * 275.51242 * 8 7 6 37 37 H 0.97003 * 120.00210 * 4.75732 * 13 11 9 38 38 H 1.08000 * 120.25289 * 0.02562 * 15 14 13 39 39 H 1.07997 * 120.66532 * 179.97438 * 16 15 14 40 40 H 1.08004 * 120.42720 * 180.02562 * 17 16 15 41 41 H 0.96993 * 120.00220 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3607 0.5928 0.0461 7 16 5.9786 1.4482 -0.0974 8 6 5.2715 3.0056 -0.7822 9 6 3.9043 3.0215 -0.0436 10 1 4.0447 3.3900 0.9725 11 6 2.9482 3.9256 -0.7782 12 8 2.2184 3.4700 -1.6329 13 7 2.9042 5.2404 -0.4851 14 6 1.9536 6.0575 -1.0919 15 6 1.8452 7.3947 -0.7033 16 6 0.8978 8.2068 -1.3081 17 6 0.0839 7.6625 -2.2855 18 6 0.2420 6.3094 -2.6325 19 6 -0.5824 5.7390 -3.6287 20 1 -1.3307 6.3424 -4.1210 21 6 -0.4284 4.3919 -3.9781 22 7 0.4779 3.6615 -3.3825 23 14 -1.5175 3.6381 -5.2953 24 1 -0.8722 3.7990 -6.6230 25 1 -1.7110 2.1936 -5.0108 26 1 -2.8354 4.3227 -5.2993 27 7 1.1709 5.5602 -2.0299 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.2194 -0.0932 -0.7890 34 1 4.2985 0.0563 0.9929 35 1 5.8787 3.8696 -0.5117 36 1 5.1384 2.9399 -1.8620 37 1 3.5346 5.6175 0.1483 38 1 2.4943 7.7932 0.0624 39 1 0.7974 9.2433 -1.0220 40 1 -0.6632 8.2693 -2.7755 41 1 0.5844 2.7282 -3.6243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882475807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:53 Heat of formation + Delta-G solvation = -10.067870 kcal Electronic energy + Delta-G solvation = -27818.221080 eV Core-core repulsion = 24018.250547 eV Total energy + Delta-G solvation = -3799.970533 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71194 -40.38747 -38.97834 -37.16115 -35.85350 -34.80972 -33.90152 -32.32818 -32.09924 -30.71061 -28.29806 -27.47531 -26.19106 -24.87019 -23.43537 -22.83104 -21.36722 -20.21031 -19.45859 -18.54516 -18.33132 -17.78443 -17.65209 -16.57750 -16.52009 -16.26753 -16.14051 -15.74787 -15.43411 -15.29437 -14.86190 -14.77904 -14.47289 -14.27281 -14.11145 -13.80390 -13.66164 -13.30740 -13.18147 -13.03552 -12.87212 -12.73966 -12.62599 -12.56567 -12.32622 -12.06657 -11.80532 -11.75782 -11.42548 -10.87596 -10.60314 -10.57496 -9.90598 -9.85822 -9.04741 -8.86304 -8.76802 -8.02620 -6.40202 0.53746 0.84009 0.97303 1.27403 1.35107 1.47441 1.49752 1.55735 1.80455 2.19809 2.24664 2.39239 2.99590 3.28623 3.60805 3.72450 3.92470 4.09366 4.10259 4.13972 4.23089 4.25904 4.34307 4.37624 4.54035 4.64675 4.74781 4.86703 4.89631 4.95928 5.00964 5.07858 5.11211 5.28562 5.32862 5.69409 5.87907 5.93360 6.14174 6.18515 6.39471 6.75696 6.86250 7.10034 7.25591 7.78438 8.38042 8.57354 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010973 B = 0.005187 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2551.003559 B = 5396.735394 C = 6868.333167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.505 3.495 4 O -0.538 6.538 5 N -0.616 5.616 6 C 0.156 3.844 7 S -0.251 6.251 8 C -0.058 4.058 9 C 0.123 3.877 10 H 0.116 0.884 11 C 0.466 3.534 12 O -0.419 6.419 13 N -0.656 5.656 14 C 0.355 3.645 15 C -0.350 4.350 16 C -0.035 4.035 17 C -0.334 4.334 18 C 0.237 3.763 19 C -0.467 4.467 20 H 0.082 0.918 21 C 0.010 3.990 22 N -0.675 5.675 23 Si 0.970 3.030 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.258 1.258 27 N -0.500 5.500 28 H 0.043 0.957 29 H 0.022 0.978 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.154 0.846 36 H 0.087 0.913 37 H 0.417 0.583 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -10.480 9.092 17.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.164 4.164 3 C 0.294 3.706 4 O -0.412 6.412 5 N -0.354 5.354 6 C -0.077 4.077 7 S -0.025 6.025 8 C -0.207 4.207 9 C 0.014 3.986 10 H 0.134 0.866 11 C 0.246 3.754 12 O -0.281 6.281 13 N -0.305 5.305 14 C 0.115 3.885 15 C -0.375 4.375 16 C -0.059 4.059 17 C -0.357 4.357 18 C 0.111 3.889 19 C -0.498 4.498 20 H 0.100 0.900 21 C -0.216 4.216 22 N -0.293 5.293 23 Si 0.791 3.209 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.182 1.182 27 N -0.219 5.219 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.153 0.847 35 H 0.172 0.828 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.119 0.881 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.803 -11.901 8.496 18.792 hybrid contribution -1.542 1.508 -0.437 2.200 sum 10.261 -10.393 8.059 16.681 Atomic orbital electron populations 1.21478 0.94312 1.02326 1.00918 1.21640 0.97407 0.90978 1.06373 1.21435 0.80570 0.93444 0.75144 1.90926 1.55298 1.47654 1.47361 1.48231 1.06033 1.04793 1.76350 1.24173 0.84652 0.91007 1.07868 1.88081 1.13133 1.17171 1.84079 1.24629 0.94333 0.99255 1.02486 1.21733 0.92012 0.84156 1.00704 0.86614 1.20952 0.85766 0.82911 0.85794 1.91147 1.36053 1.72899 1.28033 1.43236 1.33996 1.07985 1.45331 1.19091 0.89845 0.87992 0.91547 1.20969 1.10423 0.93833 1.12248 1.21008 0.92850 0.98791 0.93261 1.21781 1.08407 0.97291 1.08263 1.18876 0.89842 0.88856 0.91328 1.19841 1.16216 0.96179 1.17590 0.89987 1.26992 0.97475 0.97824 0.99318 1.70560 1.23268 1.05990 1.29499 0.85400 0.79354 0.77635 0.78486 1.18808 1.19975 1.18161 1.68657 1.07787 1.35340 1.10106 0.93736 0.95837 0.88923 0.87338 0.85182 0.87181 0.84696 0.82830 0.89468 0.74582 0.85149 0.84689 0.88069 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.58 9.20 71.98 0.66 -2.92 16 2 C -0.12 -2.78 5.37 29.85 0.16 -2.62 16 3 C 0.51 16.70 6.95 87.66 0.61 17.31 16 4 O -0.54 -25.18 12.63 20.58 0.26 -24.92 16 5 N -0.62 -16.29 3.13 -806.65 -2.52 -18.81 16 6 C 0.16 2.58 6.85 127.66 0.87 3.46 16 7 S -0.25 -4.57 23.32 -56.49 -1.32 -5.89 16 8 C -0.06 -1.25 7.04 72.81 0.51 -0.74 16 9 C 0.12 3.41 3.26 45.14 0.15 3.56 16 10 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 11 C 0.47 19.10 5.46 87.66 0.48 19.58 16 12 O -0.42 -21.76 9.63 20.61 0.20 -21.56 16 13 N -0.66 -26.27 5.38 -308.37 -1.66 -27.93 16 14 C 0.35 17.98 7.43 133.25 0.99 18.97 16 15 C -0.35 -15.69 9.95 22.72 0.23 -15.47 16 16 C -0.03 -1.60 10.15 22.40 0.23 -1.38 16 17 C -0.33 -17.82 9.83 22.87 0.22 -17.60 16 18 C 0.24 14.33 6.55 40.19 0.26 14.59 16 19 C -0.47 -27.90 9.14 23.46 0.21 -27.69 16 20 H 0.08 4.61 7.85 -2.91 -0.02 4.59 16 21 C 0.01 0.57 5.50 85.29 0.47 1.03 16 22 N -0.67 -40.20 8.99 21.84 0.20 -40.01 16 23 Si 0.97 42.54 29.56 68.60 2.03 44.56 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 N -0.50 -29.90 5.74 -186.37 -1.07 -30.97 16 28 H 0.04 1.31 8.10 -2.39 -0.02 1.29 16 29 H 0.02 0.82 8.10 -2.38 -0.02 0.80 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.11 2.03 8.03 -2.39 -0.02 2.02 16 32 H 0.13 1.75 8.14 -2.38 -0.02 1.74 16 33 H 0.11 1.57 7.99 -2.39 -0.02 1.55 16 34 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.15 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.09 2.29 8.10 -2.39 -0.02 2.27 16 37 H 0.42 12.18 8.70 -92.71 -0.81 11.37 16 38 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 39 H 0.14 5.00 8.06 -2.91 -0.02 4.97 16 40 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 41 H 0.26 14.99 8.29 -92.71 -0.77 14.22 16 Total: -1.00 -86.62 352.42 2.43 -84.19 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: 0.26 Total: 31.23 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 6.06 Total: 10.09 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -5.06 Total: -117.71 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: 0.46 Total: -46.48 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -4.57 SS G_CDS: -1.32 Total: -5.89 kcal Total: -86.62 2.43 -84.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882475807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.125 kcal (2) G-P(sol) polarization free energy of solvation -86.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds