Wall clock time and date at job start Tue Mar 31 2020 18:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47235 * 2 1 4 4 N 1.30843 * 125.89544 * 275.86429 * 3 2 1 5 5 N 1.40086 * 108.20573 * 180.14719 * 4 3 2 6 6 C 1.46500 * 126.04120 * 179.85616 * 5 4 3 7 7 C 1.34953 * 107.92232 * 359.58676 * 5 4 3 8 8 C 1.35313 * 107.74671 * 0.24573 * 7 5 4 9 9 S 1.76199 * 126.04022 * 180.02562 * 8 7 5 10 10 O 1.42103 * 106.39925 * 357.64302 * 9 8 7 11 11 O 1.42092 * 106.40334 * 130.56463 * 9 8 7 12 12 N 1.65603 * 107.21468 * 244.10622 * 9 8 7 13 13 C 1.39689 * 120.00371 * 66.77060 * 12 9 8 14 14 C 1.39336 * 119.94436 * 313.95900 * 13 12 9 15 15 C 1.38481 * 120.42084 * 179.72363 * 14 13 12 16 16 C 1.37695 * 120.32441 * 0.54973 * 15 14 13 17 17 C 1.40744 * 119.89044 * 359.72797 * 16 15 14 18 18 C 1.41411 * 120.20653 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00120 * 207.71262 * 18 17 16 20 20 C 1.39924 * 119.99894 * 27.71408 * 18 17 16 21 21 N 1.30827 * 120.00027 * 11.71984 * 20 18 17 22 22 Si 1.86797 * 119.99966 * 191.71583 * 20 18 17 23 23 H 1.48504 * 109.47188 * 60.00155 * 22 20 18 24 24 H 1.48502 * 109.47195 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47439 * 300.00390 * 22 20 18 26 26 C 1.38268 * 119.95574 * 134.23386 * 13 12 9 27 27 H 1.08990 * 109.47169 * 185.03609 * 1 2 3 28 28 H 1.08997 * 109.47216 * 305.03439 * 1 2 3 29 29 H 1.08997 * 109.46862 * 65.03181 * 1 2 3 30 30 H 1.08996 * 109.46926 * 240.00018 * 2 1 3 31 31 H 1.08999 * 109.46702 * 119.99628 * 2 1 3 32 32 H 1.08995 * 109.46811 * 269.68898 * 6 5 4 33 33 H 1.08999 * 109.46586 * 29.68536 * 6 5 4 34 34 H 1.08996 * 109.47514 * 149.68799 * 6 5 4 35 35 H 1.07997 * 126.12315 * 180.22041 * 7 5 4 36 36 H 0.96999 * 120.00235 * 246.76654 * 12 9 8 37 37 H 1.08001 * 119.79165 * 0.02562 * 14 13 12 38 38 H 1.07998 * 119.83758 * 180.28110 * 15 14 13 39 39 H 1.07990 * 120.05451 * 179.75103 * 16 15 14 40 40 H 0.97003 * 120.00137 * 180.02562 * 21 20 18 41 41 H 1.08003 * 120.16359 * 359.97236 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1860 2.1801 -1.0544 5 7 2.6751 3.4228 -0.6313 6 6 2.9892 4.5645 -1.4939 7 6 2.8002 3.3844 0.7119 8 6 2.4093 2.1575 1.1276 9 16 2.3796 1.5886 2.7950 10 8 2.8953 2.6479 3.5895 11 8 1.0953 1.0168 3.0010 12 7 3.4685 0.3461 2.9084 13 6 4.8340 0.5978 2.7554 14 6 5.2805 1.3970 1.7050 15 6 6.6314 1.6576 1.5475 16 6 7.5497 1.1200 2.4214 17 6 7.1139 0.3061 3.4837 18 6 8.0512 -0.2490 4.3854 19 1 7.8294 -1.1770 4.8915 20 6 9.2659 0.4040 4.6220 21 7 9.4441 1.6283 4.1968 22 14 10.6331 -0.4724 5.5450 23 1 11.0235 -1.6989 4.8041 24 1 11.8075 0.4288 5.6630 25 1 10.1557 -0.8443 6.9011 26 6 5.7409 0.0489 3.6432 27 1 -0.3633 -1.0236 0.0902 28 1 -0.3633 0.5899 0.8414 29 1 -0.3633 0.4338 -0.9316 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0315 4.5070 -1.8074 33 1 2.3440 4.5446 -2.3721 34 1 2.8258 5.4913 -0.9439 35 1 3.1500 4.1888 1.3420 36 1 3.1581 -0.5565 3.0811 37 1 4.5681 1.8199 1.0122 38 1 6.9667 2.2821 0.7326 39 1 8.6025 1.3228 2.2920 40 1 10.2863 2.0809 4.3605 41 1 5.3962 -0.5740 4.4553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882737323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:50 Heat of formation + Delta-G solvation = 17.952980 kcal Electronic energy + Delta-G solvation = -26963.811496 eV Core-core repulsion = 23165.056038 eV Total energy + Delta-G solvation = -3798.755458 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41156 -37.98546 -36.82410 -35.48844 -34.95480 -34.63396 -32.92109 -31.92494 -30.50688 -29.83583 -27.71841 -26.96257 -25.31331 -23.69172 -21.95441 -21.08244 -20.97378 -20.06757 -18.97351 -17.94850 -17.49209 -16.99184 -15.88683 -15.72108 -15.61079 -15.22190 -14.79798 -14.61859 -14.42548 -14.21491 -13.51734 -13.49875 -13.08931 -13.01756 -12.98156 -12.42551 -12.17506 -12.08395 -11.79598 -11.72329 -11.62559 -11.57963 -11.46867 -11.37328 -11.11248 -11.06161 -11.02051 -10.56505 -10.44790 -10.08812 -9.77997 -9.48180 -9.36542 -9.22099 -8.93206 -7.53970 -7.11444 -6.73876 -4.43534 0.79405 1.57563 2.25489 2.31136 2.73352 2.87140 3.05981 3.08718 3.17573 3.46411 3.92063 4.04346 4.26688 4.49939 4.59542 4.70720 4.89016 4.90359 5.00841 5.15719 5.29949 5.45876 5.50097 5.54479 5.58119 5.88226 5.88850 6.01889 6.24701 6.29128 6.34251 6.40214 6.71721 6.84666 6.96837 7.03824 7.17017 7.28412 7.43529 7.63093 7.78413 7.95237 8.00611 8.23499 8.58490 8.84955 8.89262 10.18976 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.003572 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.555637 B = 7835.852043 C = 8521.989452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C 0.166 3.834 4 N -0.294 5.294 5 N -0.364 5.364 6 C 0.094 3.906 7 C 0.184 3.816 8 C -0.803 4.803 9 S 2.724 3.276 10 O -0.954 6.954 11 O -0.967 6.967 12 N -1.053 6.053 13 C 0.170 3.830 14 C -0.273 4.273 15 C -0.086 4.086 16 C -0.164 4.164 17 C 0.124 3.876 18 C -0.461 4.461 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.797 5.797 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.279 1.279 25 H -0.265 1.265 26 C -0.226 4.226 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.194 0.806 36 H 0.415 0.585 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.122 0.878 40 H 0.281 0.719 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.754 2.606 -8.906 14.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.095 4.095 3 C -0.004 4.004 4 N -0.114 5.114 5 N -0.141 5.141 6 C -0.047 4.047 7 C 0.031 3.969 8 C -0.901 4.901 9 S 2.812 3.188 10 O -0.944 6.944 11 O -0.957 6.957 12 N -0.804 5.804 13 C 0.076 3.924 14 C -0.295 4.295 15 C -0.105 4.105 16 C -0.184 4.184 17 C 0.121 3.879 18 C -0.491 4.491 19 H 0.096 0.904 20 C -0.143 4.143 21 N -0.423 5.423 22 Si 0.737 3.263 23 H -0.189 1.189 24 H -0.204 1.204 25 H -0.190 1.190 26 C -0.249 4.249 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.210 0.790 36 H 0.251 0.749 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.154 3.567 -9.707 15.211 hybrid contribution 1.040 -0.484 0.585 1.288 sum -10.114 3.083 -9.122 13.965 Atomic orbital electron populations 1.21744 0.93313 1.02750 1.02754 1.20178 0.97139 0.88052 1.04138 1.21764 0.93911 0.96166 0.88558 1.77309 1.21211 0.90678 1.22241 1.48916 1.48197 1.11688 1.05273 1.22027 1.02925 0.84662 0.95098 1.22449 0.91854 0.97517 0.85084 1.31427 1.29141 1.04617 1.24922 1.00915 0.72021 0.73054 0.72800 1.93581 1.79944 1.55172 1.65744 1.93549 1.38464 1.78273 1.85450 1.53055 1.16695 1.24025 1.86660 1.16968 0.80040 1.00053 0.95304 1.20524 0.96412 1.11505 1.01062 1.20443 0.92608 0.99134 0.98348 1.21421 0.99209 1.02548 0.95247 1.17463 0.90410 0.89531 0.90527 1.19547 0.99619 1.07747 1.22168 0.90365 1.25894 0.99228 0.94259 0.94920 1.69790 1.25353 1.10083 1.37045 0.86306 0.79597 0.80026 0.80404 1.18891 1.20361 1.18988 1.20928 0.92928 1.10267 1.00760 0.91539 0.91014 0.92620 0.89369 0.89846 0.89893 0.88944 0.88932 0.78951 0.74911 0.88384 0.89246 0.85993 0.90820 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.90 37.16 0.37 -1.31 16 2 C -0.06 -0.71 6.25 -27.88 -0.17 -0.89 16 3 C 0.17 2.51 6.46 -82.40 -0.53 1.97 16 4 N -0.29 -4.41 12.58 33.67 0.42 -3.99 16 5 N -0.36 -4.70 4.01 -68.17 -0.27 -4.97 16 6 C 0.09 0.73 11.47 59.85 0.69 1.41 16 7 C 0.18 2.59 10.04 -17.22 -0.17 2.42 16 8 C -0.80 -12.72 3.90 -40.01 -0.16 -12.87 16 9 S 2.72 47.51 5.08 -107.50 -0.55 46.97 16 10 O -0.95 -19.66 17.42 -57.17 -1.00 -20.66 16 11 O -0.97 -17.00 17.57 -57.17 -1.00 -18.00 16 12 N -1.05 -18.57 5.55 32.37 0.18 -18.39 16 13 C 0.17 3.66 6.00 -83.86 -0.50 3.16 16 14 C -0.27 -5.89 9.35 -39.08 -0.37 -6.25 16 15 C -0.09 -1.96 10.02 -39.69 -0.40 -2.36 16 16 C -0.16 -4.14 8.67 -38.83 -0.34 -4.48 16 17 C 0.12 3.21 5.56 -106.85 -0.59 2.62 16 18 C -0.46 -11.90 9.06 -37.74 -0.34 -12.24 16 19 H 0.08 1.92 7.87 -52.49 -0.41 1.51 16 20 C 0.07 1.82 5.24 -17.35 -0.09 1.73 16 21 N -0.80 -20.21 10.82 55.55 0.60 -19.61 16 22 Si 0.91 18.32 29.57 -169.99 -5.03 13.30 16 23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 C -0.23 -5.37 9.71 -38.68 -0.38 -5.74 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.92 7.81 -51.93 -0.41 0.51 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 1.03 7.51 -51.93 -0.39 0.64 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 36 H 0.42 6.03 8.95 -34.47 -0.31 5.72 16 37 H 0.10 1.90 4.29 -52.49 -0.23 1.68 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.12 3.16 6.17 -52.49 -0.32 2.84 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 41 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -32.92 359.47 -9.22 -42.14 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -5.01 Total: 10.62 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -2.99 Total: -32.83 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.93 Total: -46.95 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -2.00 Total: -38.66 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -0.55 Total: 46.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.92 -9.22 -42.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882737323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.094 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds