Wall clock time and date at job start Tue Mar 31 2020 18:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47235 * 2 1 4 4 N 1.30843 * 125.89544 * 275.86429 * 3 2 1 5 5 N 1.40086 * 108.20573 * 180.14719 * 4 3 2 6 6 C 1.46500 * 126.04120 * 179.85616 * 5 4 3 7 7 C 1.34953 * 107.92232 * 359.58676 * 5 4 3 8 8 C 1.35313 * 107.74671 * 0.24573 * 7 5 4 9 9 S 1.76199 * 126.04022 * 180.02562 * 8 7 5 10 10 O 1.42103 * 106.39925 * 357.64302 * 9 8 7 11 11 O 1.42092 * 106.40334 * 130.56463 * 9 8 7 12 12 N 1.65603 * 107.21468 * 244.10622 * 9 8 7 13 13 C 1.39689 * 120.00371 * 66.77060 * 12 9 8 14 14 C 1.39336 * 119.94436 * 313.95900 * 13 12 9 15 15 C 1.38481 * 120.42084 * 179.72363 * 14 13 12 16 16 C 1.37695 * 120.32441 * 0.54973 * 15 14 13 17 17 C 1.40744 * 119.89044 * 359.72797 * 16 15 14 18 18 C 1.41411 * 120.20653 * 180.02562 * 17 16 15 19 19 H 1.08001 * 120.00120 * 207.71262 * 18 17 16 20 20 C 1.39924 * 119.99894 * 27.71408 * 18 17 16 21 21 N 1.30827 * 120.00027 * 11.71984 * 20 18 17 22 22 Si 1.86797 * 119.99966 * 191.71583 * 20 18 17 23 23 H 1.48504 * 109.47188 * 60.00155 * 22 20 18 24 24 H 1.48502 * 109.47195 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47439 * 300.00390 * 22 20 18 26 26 C 1.38268 * 119.95574 * 134.23386 * 13 12 9 27 27 H 1.08990 * 109.47169 * 185.03609 * 1 2 3 28 28 H 1.08997 * 109.47216 * 305.03439 * 1 2 3 29 29 H 1.08997 * 109.46862 * 65.03181 * 1 2 3 30 30 H 1.08996 * 109.46926 * 240.00018 * 2 1 3 31 31 H 1.08999 * 109.46702 * 119.99628 * 2 1 3 32 32 H 1.08995 * 109.46811 * 269.68898 * 6 5 4 33 33 H 1.08999 * 109.46586 * 29.68536 * 6 5 4 34 34 H 1.08996 * 109.47514 * 149.68799 * 6 5 4 35 35 H 1.07997 * 126.12315 * 180.22041 * 7 5 4 36 36 H 0.96999 * 120.00235 * 246.76654 * 12 9 8 37 37 H 1.08001 * 119.79165 * 0.02562 * 14 13 12 38 38 H 1.07998 * 119.83758 * 180.28110 * 15 14 13 39 39 H 1.07990 * 120.05451 * 179.75103 * 16 15 14 40 40 H 0.97003 * 120.00137 * 180.02562 * 21 20 18 41 41 H 1.08003 * 120.16359 * 359.97236 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.1860 2.1801 -1.0544 5 7 2.6751 3.4228 -0.6313 6 6 2.9892 4.5645 -1.4939 7 6 2.8002 3.3844 0.7119 8 6 2.4093 2.1575 1.1276 9 16 2.3796 1.5886 2.7950 10 8 2.8953 2.6479 3.5895 11 8 1.0953 1.0168 3.0010 12 7 3.4685 0.3461 2.9084 13 6 4.8340 0.5978 2.7554 14 6 5.2805 1.3970 1.7050 15 6 6.6314 1.6576 1.5475 16 6 7.5497 1.1200 2.4214 17 6 7.1139 0.3061 3.4837 18 6 8.0512 -0.2490 4.3854 19 1 7.8294 -1.1770 4.8915 20 6 9.2659 0.4040 4.6220 21 7 9.4441 1.6283 4.1968 22 14 10.6331 -0.4724 5.5450 23 1 11.0235 -1.6989 4.8041 24 1 11.8075 0.4288 5.6630 25 1 10.1557 -0.8443 6.9011 26 6 5.7409 0.0489 3.6432 27 1 -0.3633 -1.0236 0.0902 28 1 -0.3633 0.5899 0.8414 29 1 -0.3633 0.4338 -0.9316 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 4.0315 4.5070 -1.8074 33 1 2.3440 4.5446 -2.3721 34 1 2.8258 5.4913 -0.9439 35 1 3.1500 4.1888 1.3420 36 1 3.1581 -0.5565 3.0811 37 1 4.5681 1.8199 1.0122 38 1 6.9667 2.2821 0.7326 39 1 8.6025 1.3228 2.2920 40 1 10.2863 2.0809 4.3605 41 1 5.3962 -0.5740 4.4553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882737323.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:50 Heat of formation + Delta-G solvation = -4.323117 kcal Electronic energy + Delta-G solvation = -26964.777460 eV Core-core repulsion = 23165.056038 eV Total energy + Delta-G solvation = -3799.721422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47586 -39.74095 -38.28240 -36.96148 -36.47950 -35.78929 -34.66887 -32.82412 -31.87145 -31.41297 -29.46442 -27.82493 -27.15772 -24.65581 -23.15388 -22.83155 -22.62519 -21.17965 -20.41218 -19.47952 -18.87479 -18.38895 -17.51174 -16.96553 -16.81373 -16.78067 -16.26822 -16.03639 -15.63696 -15.28011 -15.14157 -14.72523 -14.40886 -14.16650 -13.90782 -13.77043 -13.73844 -13.30903 -13.26805 -13.15243 -13.09569 -13.04788 -12.83879 -12.79235 -12.69788 -12.36777 -12.15572 -12.07789 -11.85826 -11.69670 -11.48296 -11.14154 -10.97974 -10.46204 -10.12314 -9.39864 -8.89893 -8.56150 -6.36422 -0.59084 0.49122 0.96085 1.04204 1.12573 1.40906 1.42160 1.53043 1.55566 2.06032 2.24586 2.69635 2.79278 3.18538 3.46029 3.70306 3.72072 3.90414 4.14611 4.20038 4.33907 4.35744 4.39120 4.52922 4.57649 4.61210 4.64098 4.65589 5.01712 5.04958 5.09782 5.10503 5.25830 5.31166 5.33954 5.41725 5.55574 5.77850 5.84586 6.05901 6.10334 6.21384 6.36181 6.39486 6.71007 6.95901 7.02118 8.38562 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.003572 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.555637 B = 7835.852043 C = 8521.989452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.065 4.065 3 C 0.158 3.842 4 N -0.311 5.311 5 N -0.356 5.356 6 C 0.080 3.920 7 C 0.181 3.819 8 C -0.824 4.824 9 S 2.738 3.262 10 O -0.989 6.989 11 O -0.970 6.970 12 N -1.048 6.048 13 C 0.180 3.820 14 C -0.270 4.270 15 C -0.087 4.087 16 C -0.190 4.190 17 C 0.096 3.904 18 C -0.497 4.497 19 H 0.078 0.922 20 C 0.034 3.966 21 N -0.828 5.828 22 Si 0.984 3.016 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.262 1.262 26 C -0.246 4.246 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.214 0.786 36 H 0.429 0.571 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.287 0.713 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 2.942 -9.980 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 C -0.011 4.011 4 N -0.132 5.132 5 N -0.132 5.132 6 C -0.059 4.059 7 C 0.026 3.974 8 C -0.925 4.925 9 S 2.829 3.171 10 O -0.979 6.979 11 O -0.961 6.961 12 N -0.800 5.800 13 C 0.086 3.914 14 C -0.292 4.292 15 C -0.106 4.106 16 C -0.210 4.210 17 C 0.092 3.908 18 C -0.527 4.527 19 H 0.096 0.904 20 C -0.180 4.180 21 N -0.454 5.454 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.193 1.193 25 H -0.186 1.186 26 C -0.269 4.269 27 H 0.105 0.895 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.123 0.877 34 H 0.141 0.859 35 H 0.231 0.769 36 H 0.267 0.733 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.639 3.887 -10.780 16.334 hybrid contribution 1.032 -0.488 0.777 1.381 sum -10.607 3.399 -10.003 14.971 Atomic orbital electron populations 1.21727 0.92379 1.03827 1.02258 1.20367 0.98014 0.87191 1.04842 1.22092 0.93735 0.97040 0.88215 1.77268 1.21767 0.91635 1.22489 1.49303 1.46521 1.11980 1.05393 1.22505 1.03836 0.84102 0.95430 1.22832 0.91199 0.97463 0.85939 1.31123 1.31672 1.05959 1.23766 1.00241 0.71486 0.72249 0.73136 1.93540 1.80489 1.56220 1.67619 1.93540 1.38245 1.78259 1.86006 1.52958 1.15159 1.25204 1.86700 1.16968 0.81309 0.98778 0.94369 1.20839 0.96456 1.10722 1.01135 1.20733 0.92812 0.98673 0.98336 1.21387 0.99044 1.04139 0.96412 1.17811 0.91524 0.90316 0.91105 1.19832 1.01132 1.08422 1.23330 0.90361 1.26730 1.01072 0.94714 0.95532 1.69852 1.26242 1.11286 1.38058 0.85221 0.76471 0.78876 0.78930 1.18365 1.19343 1.18613 1.21107 0.92860 1.11186 1.01792 0.89469 0.92715 0.92097 0.88041 0.89782 0.88841 0.87728 0.85923 0.76916 0.73308 0.85964 0.86773 0.87495 0.90194 0.87637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.90 71.98 0.71 -2.33 16 2 C -0.06 -1.55 6.25 29.85 0.19 -1.37 16 3 C 0.16 4.52 6.46 43.10 0.28 4.80 16 4 N -0.31 -8.66 12.58 -47.38 -0.60 -9.26 16 5 N -0.36 -8.24 4.01 -369.58 -1.48 -9.73 16 6 C 0.08 0.98 11.47 127.77 1.47 2.45 16 7 C 0.18 4.68 10.04 83.54 0.84 5.52 16 8 C -0.82 -24.79 3.90 21.99 0.09 -24.70 16 9 S 2.74 93.11 5.08 -56.49 -0.29 92.82 16 10 O -0.99 -40.24 17.42 -128.00 -2.23 -42.47 16 11 O -0.97 -33.27 17.57 -128.00 -2.25 -35.52 16 12 N -1.05 -36.20 5.55 -51.49 -0.29 -36.48 16 13 C 0.18 7.70 6.00 38.16 0.23 7.93 16 14 C -0.27 -11.35 9.35 22.59 0.21 -11.14 16 15 C -0.09 -3.89 10.02 22.20 0.22 -3.67 16 16 C -0.19 -9.77 8.67 22.75 0.20 -9.57 16 17 C 0.10 5.09 5.56 -21.31 -0.12 4.97 16 18 C -0.50 -26.43 9.06 23.46 0.21 -26.22 16 19 H 0.08 3.97 7.87 -2.91 -0.02 3.95 16 20 C 0.03 1.69 5.24 85.25 0.45 2.13 16 21 N -0.83 -42.84 10.82 21.82 0.24 -42.60 16 22 Si 0.98 37.76 29.57 68.60 2.03 39.79 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 24 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 C -0.25 -11.90 9.71 22.85 0.22 -11.68 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.34 7.81 -2.39 -0.02 1.32 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 1.95 7.51 -2.39 -0.02 1.93 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.21 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.43 12.14 8.95 -96.74 -0.87 11.27 16 37 H 0.12 4.51 4.29 -2.91 -0.01 4.50 16 38 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.11 5.74 6.17 -2.92 -0.02 5.72 16 40 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 41 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -71.44 359.47 0.53 -70.91 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: 0.21 Total: 35.40 kcal Atomic # 6 Polarization: -68.05 SS G_CDS: 5.19 Total: -62.86 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -2.13 Total: -98.07 kcal Atomic # 8 Polarization: -73.51 SS G_CDS: -4.48 Total: -77.99 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 16 Polarization: 93.11 SS G_CDS: -0.29 Total: 92.82 kcal Total: -71.44 0.53 -70.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882737323.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.584 kcal (2) G-P(sol) polarization free energy of solvation -71.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds