Wall clock time and date at job start Tue Mar 31 2020 18:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31371 * 122.07652 * 2 1 4 4 C 1.30220 * 117.02641 * 180.28623 * 3 2 1 5 5 C 1.47889 * 125.47315 * 179.75297 * 4 3 2 6 6 C 1.41020 * 126.06585 * 359.97438 * 5 4 3 7 7 C 1.35028 * 107.84476 * 180.02562 * 6 5 4 8 8 N 1.35070 * 108.02527 * 0.02562 * 7 6 5 9 9 C 1.46502 * 125.91080 * 180.02562 * 8 7 6 10 10 N 1.31796 * 126.06322 * 179.69017 * 5 4 3 11 11 S 1.76180 * 109.05193 * 359.75127 * 4 3 2 12 12 C 1.33661 * 122.07457 * 179.81398 * 2 1 3 13 13 C 1.50697 * 125.88692 * 0.02562 * 12 2 1 14 14 C 1.50700 * 109.47266 * 89.71321 * 13 12 2 15 15 O 1.20822 * 119.99958 * 0.02562 * 14 13 12 16 16 O 1.34234 * 120.00068 * 180.02562 * 14 13 12 17 17 C 1.45196 * 116.99938 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47070 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47221 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00171 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99797 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00142 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47194 * 59.99986 * 23 21 19 25 25 H 1.48501 * 109.47203 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47327 * 299.99785 * 23 21 19 27 27 H 1.08997 * 109.47475 * 270.18226 * 1 2 3 28 28 H 1.08995 * 109.47138 * 30.18883 * 1 2 3 29 29 H 1.09007 * 109.47414 * 150.18339 * 1 2 3 30 30 H 1.08002 * 126.07973 * 359.96951 * 6 5 4 31 31 H 1.07997 * 125.98477 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.46900 * 89.99834 * 9 8 7 33 33 H 1.09001 * 109.46766 * 209.99649 * 9 8 7 34 34 H 1.08994 * 109.47197 * 329.99407 * 9 8 7 35 35 H 1.09004 * 109.47205 * 329.71415 * 13 12 2 36 36 H 1.08997 * 109.47395 * 209.71907 * 13 12 2 37 37 H 1.08996 * 109.47465 * 299.99911 * 17 16 14 38 38 H 1.08999 * 109.47008 * 59.99921 * 17 16 14 39 39 H 1.08998 * 109.47592 * 300.00297 * 18 17 16 40 40 H 1.08999 * 109.47084 * 60.00195 * 18 17 16 41 41 H 0.97004 * 120.00040 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2046 1.1132 0.0000 4 6 3.5017 0.9985 -0.0058 5 6 4.4626 2.1227 -0.0121 6 6 4.1355 3.4944 -0.0133 7 6 5.2898 4.1951 -0.0202 8 7 6.3135 3.3139 -0.0238 9 6 7.7388 3.6527 -0.0309 10 7 5.7766 2.0202 -0.0122 11 16 3.9280 -0.7109 -0.0049 12 6 2.2167 -1.1326 0.0037 13 6 1.6513 -2.5294 0.0077 14 6 1.4567 -2.9967 -1.4118 15 8 1.7478 -2.2702 -2.3322 16 8 0.9600 -4.2201 -1.6536 17 6 0.7990 -4.6031 -3.0448 18 6 0.2255 -6.0194 -3.1208 19 6 0.0591 -6.4172 -4.5649 20 1 0.3344 -5.7285 -5.3499 21 6 -0.4457 -7.6600 -4.8839 22 7 -0.7815 -8.4985 -3.9279 23 14 -0.6527 -8.1527 -6.6737 24 1 0.6674 -8.1166 -7.3529 25 1 -1.2104 -9.5270 -6.7475 26 1 -1.5802 -7.2060 -7.3437 27 1 -0.3634 0.0033 1.0276 28 1 -0.3633 0.8882 -0.5167 29 1 -0.3634 -0.8917 -0.5110 30 1 3.1389 3.9107 -0.0103 31 1 5.3788 5.2714 -0.0224 32 1 8.0970 3.7381 0.9950 33 1 8.2957 2.8701 -0.5462 34 1 7.8841 4.6018 -0.5467 35 1 0.6921 -2.5317 0.5256 36 1 2.3420 -3.1996 0.5194 37 1 0.1184 -3.9082 -3.5366 38 1 1.7680 -4.5766 -3.5434 39 1 0.9065 -6.7141 -2.6292 40 1 -0.7434 -6.0463 -2.6222 41 1 -1.1370 -9.3727 -4.1523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884820872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:56 Heat of formation + Delta-G solvation = 28.397938 kcal Electronic energy + Delta-G solvation = -24552.285674 eV Core-core repulsion = 20753.983144 eV Total energy + Delta-G solvation = -3798.302531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51362 -40.29247 -39.50153 -36.20415 -34.37151 -33.36849 -32.96999 -30.72711 -30.53612 -29.93229 -27.84715 -26.25317 -24.90599 -24.41985 -21.75502 -21.26826 -20.78686 -20.55278 -18.58765 -18.05130 -17.46779 -17.34654 -16.22003 -16.09258 -15.96054 -15.81318 -15.36878 -14.78775 -14.46978 -14.25763 -13.96620 -13.75588 -13.56362 -13.33131 -12.97530 -12.85232 -12.68087 -12.66566 -12.49369 -12.34187 -12.14684 -11.26512 -11.21753 -11.13445 -11.06874 -10.74046 -10.70952 -10.32046 -10.12603 -9.84834 -9.65381 -9.64557 -9.36334 -9.29479 -9.10746 -8.44133 -8.39860 -6.10424 -4.14852 0.16863 1.10229 1.49344 1.57921 1.96148 2.20203 2.52693 2.96925 3.25323 3.30372 3.34394 3.39215 3.56882 4.25614 4.39366 4.40260 4.47631 4.66224 4.68835 4.82972 4.93225 5.13385 5.23003 5.26032 5.31591 5.32077 5.37400 5.49076 5.51813 5.66620 5.79640 6.07417 6.08601 6.08812 6.15793 6.53553 6.62967 6.96608 7.13442 7.55076 7.56625 7.61687 7.86246 8.16608 8.25160 8.90337 9.49476 11.00927 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.001946 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.209756 B =14383.633521 C =14918.454147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.082 3.918 3 N -0.443 5.443 4 C 0.137 3.863 5 C 0.138 3.862 6 C -0.223 4.223 7 C 0.051 3.949 8 N -0.366 5.366 9 C 0.100 3.900 10 N -0.273 5.273 11 S 0.144 5.856 12 C -0.203 4.203 13 C -0.039 4.039 14 C 0.454 3.546 15 O -0.506 6.506 16 O -0.355 6.355 17 C 0.076 3.924 18 C 0.025 3.975 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.158 0.842 31 H 0.181 0.819 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.760 25.743 13.786 31.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 N -0.159 5.159 4 C -0.139 4.139 5 C -0.028 4.028 6 C -0.255 4.255 7 C -0.094 4.094 8 N -0.150 5.150 9 C -0.041 4.041 10 N -0.099 5.099 11 S 0.402 5.598 12 C -0.325 4.325 13 C -0.079 4.079 14 C 0.295 3.705 15 O -0.394 6.394 16 O -0.272 6.272 17 C 0.003 3.997 18 C -0.012 4.012 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.176 0.824 31 H 0.198 0.802 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.688 24.936 13.505 31.936 hybrid contribution -1.497 0.313 -1.174 1.928 sum 13.191 25.249 12.331 31.041 Atomic orbital electron populations 1.20441 0.86816 1.03910 1.02974 1.19931 0.98279 0.85610 1.01328 1.66302 1.03640 1.30861 1.15097 1.24026 0.91280 0.93174 1.05443 1.19199 0.89689 0.91525 1.02402 1.21493 0.99666 0.90840 1.13495 1.22549 0.87127 0.97198 1.02481 1.48477 1.06902 1.03281 1.56329 1.21947 0.75804 1.02634 1.03706 1.77638 1.08112 0.99812 1.24339 1.85040 1.05007 1.02262 1.67478 1.25077 0.95803 0.99089 1.12548 1.19653 1.04550 0.90489 0.93166 1.23246 0.74752 0.80810 0.91670 1.90666 1.46830 1.55492 1.46450 1.86515 1.74257 1.31785 1.34613 1.23664 1.00791 0.99902 0.75325 1.19171 0.97000 0.87286 0.97784 1.20939 1.43843 1.00541 0.91228 0.92328 1.24979 0.95094 0.96275 0.97783 1.69965 1.42842 1.07912 1.32078 0.86528 0.78599 0.77608 0.84535 1.20077 1.21109 1.20067 0.90290 0.90212 0.90617 0.82404 0.80160 0.90394 0.88978 0.89036 0.85439 0.86386 0.92242 0.92316 0.95329 0.95288 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.76 36.00 0.35 -0.53 16 2 C 0.08 1.11 6.69 -84.40 -0.56 0.55 16 3 N -0.44 -6.31 10.51 -7.55 -0.08 -6.39 16 4 C 0.14 1.92 7.50 -14.29 -0.11 1.81 16 5 C 0.14 1.77 7.15 -82.88 -0.59 1.17 16 6 C -0.22 -2.25 10.74 -39.67 -0.43 -2.68 16 7 C 0.05 0.37 11.46 -17.27 -0.20 0.17 16 8 N -0.37 -3.09 4.01 -68.21 -0.27 -3.36 16 9 C 0.10 0.37 11.46 59.85 0.69 1.06 16 10 N -0.27 -3.35 12.62 33.36 0.42 -2.92 16 11 S 0.14 1.93 23.43 -107.50 -2.52 -0.59 16 12 C -0.20 -2.73 5.07 -35.91 -0.18 -2.91 16 13 C -0.04 -0.47 5.69 -29.04 -0.17 -0.64 16 14 C 0.45 7.82 7.95 36.01 0.29 8.11 16 15 O -0.51 -10.22 15.78 -18.75 -0.30 -10.52 16 16 O -0.36 -6.98 10.22 -39.27 -0.40 -7.38 16 17 C 0.08 1.69 5.40 37.16 0.20 1.89 16 18 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 19 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 23 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.82 7.27 -51.93 -0.38 0.45 16 30 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 31 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 35 H 0.13 1.21 7.37 -51.93 -0.38 0.83 16 36 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 38 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -35.85 377.73 -8.38 -44.23 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -5.37 Total: -4.58 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.27 Total: -5.07 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.80 Total: -38.27 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.70 Total: -17.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.52 Total: -0.59 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.85 -8.38 -44.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884820872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.628 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds