Wall clock time and date at job start Tue Mar 31 2020 18:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31371 * 122.07652 * 2 1 4 4 C 1.30220 * 117.02641 * 180.28623 * 3 2 1 5 5 C 1.47889 * 125.47315 * 179.75297 * 4 3 2 6 6 C 1.41020 * 126.06585 * 359.97438 * 5 4 3 7 7 C 1.35028 * 107.84476 * 180.02562 * 6 5 4 8 8 N 1.35070 * 108.02527 * 0.02562 * 7 6 5 9 9 C 1.46502 * 125.91080 * 180.02562 * 8 7 6 10 10 N 1.31796 * 126.06322 * 179.69017 * 5 4 3 11 11 S 1.76180 * 109.05193 * 359.75127 * 4 3 2 12 12 C 1.33661 * 122.07457 * 179.81398 * 2 1 3 13 13 C 1.50697 * 125.88692 * 0.02562 * 12 2 1 14 14 C 1.50700 * 109.47266 * 89.71321 * 13 12 2 15 15 O 1.20822 * 119.99958 * 0.02562 * 14 13 12 16 16 O 1.34234 * 120.00068 * 180.02562 * 14 13 12 17 17 C 1.45196 * 116.99938 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47070 * 179.97438 * 17 16 14 19 19 C 1.50703 * 109.47221 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99956 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00171 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99797 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00142 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47194 * 59.99986 * 23 21 19 25 25 H 1.48501 * 109.47203 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47327 * 299.99785 * 23 21 19 27 27 H 1.08997 * 109.47475 * 270.18226 * 1 2 3 28 28 H 1.08995 * 109.47138 * 30.18883 * 1 2 3 29 29 H 1.09007 * 109.47414 * 150.18339 * 1 2 3 30 30 H 1.08002 * 126.07973 * 359.96951 * 6 5 4 31 31 H 1.07997 * 125.98477 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.46900 * 89.99834 * 9 8 7 33 33 H 1.09001 * 109.46766 * 209.99649 * 9 8 7 34 34 H 1.08994 * 109.47197 * 329.99407 * 9 8 7 35 35 H 1.09004 * 109.47205 * 329.71415 * 13 12 2 36 36 H 1.08997 * 109.47395 * 209.71907 * 13 12 2 37 37 H 1.08996 * 109.47465 * 299.99911 * 17 16 14 38 38 H 1.08999 * 109.47008 * 59.99921 * 17 16 14 39 39 H 1.08998 * 109.47592 * 300.00297 * 18 17 16 40 40 H 1.08999 * 109.47084 * 60.00195 * 18 17 16 41 41 H 0.97004 * 120.00040 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2046 1.1132 0.0000 4 6 3.5017 0.9985 -0.0058 5 6 4.4626 2.1227 -0.0121 6 6 4.1355 3.4944 -0.0133 7 6 5.2898 4.1951 -0.0202 8 7 6.3135 3.3139 -0.0238 9 6 7.7388 3.6527 -0.0309 10 7 5.7766 2.0202 -0.0122 11 16 3.9280 -0.7109 -0.0049 12 6 2.2167 -1.1326 0.0037 13 6 1.6513 -2.5294 0.0077 14 6 1.4567 -2.9967 -1.4118 15 8 1.7478 -2.2702 -2.3322 16 8 0.9600 -4.2201 -1.6536 17 6 0.7990 -4.6031 -3.0448 18 6 0.2255 -6.0194 -3.1208 19 6 0.0591 -6.4172 -4.5649 20 1 0.3344 -5.7285 -5.3499 21 6 -0.4457 -7.6600 -4.8839 22 7 -0.7815 -8.4985 -3.9279 23 14 -0.6527 -8.1527 -6.6737 24 1 0.6674 -8.1166 -7.3529 25 1 -1.2104 -9.5270 -6.7475 26 1 -1.5802 -7.2060 -7.3437 27 1 -0.3634 0.0033 1.0276 28 1 -0.3633 0.8882 -0.5167 29 1 -0.3634 -0.8917 -0.5110 30 1 3.1389 3.9107 -0.0103 31 1 5.3788 5.2714 -0.0224 32 1 8.0970 3.7381 0.9950 33 1 8.2957 2.8701 -0.5462 34 1 7.8841 4.6018 -0.5467 35 1 0.6921 -2.5317 0.5256 36 1 2.3420 -3.1996 0.5194 37 1 0.1184 -3.9082 -3.5366 38 1 1.7680 -4.5766 -3.5434 39 1 0.9065 -6.7141 -2.6292 40 1 -0.7434 -6.0463 -2.6222 41 1 -1.1370 -9.3727 -4.1523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884820872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:55 Heat of formation + Delta-G solvation = 6.021899 kcal Electronic energy + Delta-G solvation = -24553.255972 eV Core-core repulsion = 20753.983144 eV Total energy + Delta-G solvation = -3799.272828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21278 -41.62761 -40.66026 -37.78388 -35.45502 -35.19042 -33.84932 -32.37832 -31.34675 -31.11265 -28.52602 -27.55915 -26.49467 -25.35968 -23.23753 -22.41919 -21.98843 -21.58753 -19.52459 -19.06400 -19.04478 -18.18364 -18.08981 -17.53267 -17.26875 -16.60098 -16.47948 -16.28254 -15.70566 -15.30014 -14.99422 -14.65055 -14.52301 -14.35608 -14.29594 -13.92559 -13.86211 -13.69068 -13.27074 -13.22077 -13.17239 -13.03634 -12.99383 -12.59167 -12.57856 -12.16869 -11.95418 -11.91017 -11.56251 -11.48494 -11.41134 -10.90667 -10.85974 -10.60793 -10.35273 -9.86248 -9.28700 -8.27076 -6.40163 -0.83151 0.10823 0.57459 0.77613 1.13926 1.33458 1.40215 1.40970 1.43965 1.51972 1.81579 2.10996 2.40343 2.76250 3.07096 3.40938 3.69754 3.80176 3.87274 3.91256 4.09686 4.21232 4.25698 4.40899 4.42387 4.45103 4.55603 4.65580 4.69597 4.71708 4.74925 4.76646 4.79950 4.95729 5.24864 5.28548 5.34520 5.47124 5.53316 5.74203 6.02962 6.06479 6.38009 6.58521 6.68996 6.73978 7.29292 8.85017 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.001946 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.209756 B =14383.633521 C =14918.454147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.074 3.926 3 N -0.460 5.460 4 C 0.135 3.865 5 C 0.106 3.894 6 C -0.248 4.248 7 C 0.075 3.925 8 N -0.361 5.361 9 C 0.089 3.911 10 N -0.310 5.310 11 S 0.127 5.873 12 C -0.216 4.216 13 C -0.028 4.028 14 C 0.455 3.545 15 O -0.537 6.537 16 O -0.359 6.359 17 C 0.091 3.909 18 C 0.031 3.969 19 C -0.552 4.552 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.924 5.924 23 Si 0.972 3.028 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.266 1.266 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.232 0.768 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.162 0.838 36 H 0.144 0.856 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.008 0.992 40 H 0.010 0.990 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.398 27.681 13.800 33.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 N -0.176 5.176 4 C -0.141 4.141 5 C -0.059 4.059 6 C -0.280 4.280 7 C -0.071 4.071 8 N -0.145 5.145 9 C -0.050 4.050 10 N -0.138 5.138 11 S 0.386 5.614 12 C -0.338 4.338 13 C -0.068 4.068 14 C 0.299 3.701 15 O -0.427 6.427 16 O -0.276 6.276 17 C 0.018 3.982 18 C -0.006 4.006 19 C -0.590 4.590 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.563 5.563 23 Si 0.795 3.205 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.191 1.191 27 H 0.123 0.877 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.178 0.822 31 H 0.248 0.752 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.146 0.854 35 H 0.180 0.820 36 H 0.162 0.838 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.029 0.971 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.340 26.876 13.537 33.777 hybrid contribution -1.566 -0.118 -1.107 1.921 sum 13.775 26.758 12.430 32.561 Atomic orbital electron populations 1.20536 0.85064 1.03793 1.04636 1.20410 0.99537 0.85509 1.00465 1.66364 1.03852 1.31296 1.16079 1.24425 0.91608 0.93662 1.04406 1.19368 0.89965 0.92272 1.04284 1.21717 1.01092 0.90078 1.15086 1.23252 0.85623 0.98976 0.99246 1.48931 1.08760 1.02323 1.54476 1.22379 0.73257 1.04132 1.05261 1.77547 1.08089 1.02465 1.25672 1.84996 1.05826 1.02752 1.67875 1.25177 0.95462 0.99521 1.13647 1.19815 1.06959 0.90172 0.89810 1.24194 0.73147 0.79324 0.93459 1.90656 1.48110 1.55975 1.47980 1.86505 1.74963 1.33492 1.32630 1.23153 1.00247 0.97744 0.77058 1.18983 0.95670 0.89208 0.96784 1.21338 1.44240 1.01176 0.92257 0.91924 1.25937 0.94442 0.96144 1.02666 1.70083 1.43375 1.08385 1.34469 0.85402 0.78931 0.77502 0.78626 1.19226 1.20349 1.19110 0.87672 0.90242 0.90744 0.82151 0.75205 0.88814 0.89459 0.85423 0.82045 0.83830 0.92194 0.92600 0.97403 0.97140 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.76 71.23 0.70 -0.96 16 2 C 0.07 1.98 6.69 41.59 0.28 2.26 16 3 N -0.46 -13.25 10.51 -177.79 -1.87 -15.12 16 4 C 0.14 3.88 7.50 87.49 0.66 4.54 16 5 C 0.11 2.74 7.15 42.39 0.30 3.05 16 6 C -0.25 -4.83 10.74 22.21 0.24 -4.59 16 7 C 0.07 0.89 11.46 83.46 0.96 1.85 16 8 N -0.36 -5.44 4.01 -369.71 -1.48 -6.92 16 9 C 0.09 0.43 11.46 127.77 1.46 1.89 16 10 N -0.31 -7.60 12.62 -48.36 -0.61 -8.22 16 11 S 0.13 3.50 23.43 -56.49 -1.32 2.18 16 12 C -0.22 -5.72 5.07 24.65 0.12 -5.59 16 13 C -0.03 -0.66 5.69 29.10 0.17 -0.49 16 14 C 0.46 15.50 7.95 71.24 0.57 16.07 16 15 O -0.54 -21.84 15.78 21.98 0.35 -21.50 16 16 O -0.36 -14.10 10.22 -51.46 -0.53 -14.63 16 17 C 0.09 4.14 5.40 71.98 0.39 4.53 16 18 C 0.03 1.65 5.35 29.85 0.16 1.81 16 19 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 20 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.01 0.42 5.46 84.65 0.46 0.88 16 22 N -0.92 -55.26 13.29 21.45 0.28 -54.97 16 23 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.53 7.27 -2.38 -0.02 1.51 16 30 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.23 0.18 8.06 -2.91 -0.02 0.16 16 32 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.13 -0.29 8.14 -2.39 -0.02 -0.30 16 35 H 0.16 2.66 7.37 -2.38 -0.02 2.64 16 36 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 38 H 0.06 2.54 8.13 -2.39 -0.02 2.52 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -80.15 377.73 4.59 -75.56 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 1.05 Total: 3.79 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 6.69 Total: -6.08 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.68 Total: -85.23 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.18 Total: -36.12 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -1.32 Total: 2.18 kcal Total: -80.15 4.59 -75.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884820872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.582 kcal (2) G-P(sol) polarization free energy of solvation -80.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds