Wall clock time and date at job start Tue Mar 31 2020 19:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 S 1.65606 * 120.00213 * 94.99840 * 12 2 1 14 14 O 1.42098 * 104.27410 * 181.07152 * 13 12 2 15 15 O 1.42100 * 104.27459 * 308.92865 * 13 12 2 16 16 C 1.81394 * 104.44702 * 65.00061 * 13 12 2 17 17 C 1.50700 * 109.47194 * 180.02562 * 16 13 12 18 18 C 1.38282 * 119.93302 * 269.72486 * 17 16 13 19 19 C 1.38116 * 120.06728 * 179.76335 * 18 17 16 20 20 C 1.38840 * 119.93148 * 0.53412 * 19 18 17 21 21 N 1.40186 * 120.06490 * 179.70164 * 20 19 18 22 22 C 1.35218 * 126.05220 * 359.73515 * 21 20 19 23 23 C 1.35324 * 107.71010 * 179.83926 * 22 21 20 24 24 C 1.39917 * 107.93111 * 0.42553 * 23 22 21 25 25 N 1.30868 * 108.24357 * 359.73453 * 24 23 22 26 26 C 1.38832 * 119.86565 * 359.71901 * 20 19 18 27 27 C 1.38122 * 119.93690 * 0.02562 * 26 20 19 28 28 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 30 30 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 0.97006 * 119.99959 * 275.00431 * 12 2 1 33 33 H 1.09007 * 109.47432 * 299.99980 * 16 13 12 34 34 H 1.09004 * 109.47490 * 59.99713 * 16 13 12 35 35 H 1.08007 * 119.96402 * 0.02562 * 18 17 16 36 36 H 1.07998 * 120.03457 * 180.25283 * 19 18 17 37 37 H 1.07998 * 126.15027 * 359.95957 * 22 21 20 38 38 H 1.08006 * 126.03177 * 180.12350 * 23 22 21 39 39 H 1.08000 * 125.88005 * 179.76062 * 24 23 22 40 40 H 1.08001 * 120.03521 * 180.02562 * 26 20 19 41 41 H 1.07996 * 119.96869 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1774 -2.5505 14 8 2.8122 -0.8073 -3.4937 15 8 1.2751 0.9968 -2.7845 16 6 3.8313 1.1874 -2.0440 17 6 4.2864 2.0327 -3.2056 18 6 5.2436 1.5483 -4.0782 19 6 5.6592 2.3187 -5.1466 20 6 5.1230 3.5850 -5.3376 21 7 5.5475 4.3718 -6.4174 22 6 6.4714 4.0234 -7.3412 23 6 6.5916 5.0526 -8.2116 24 6 5.7199 6.0674 -7.8018 25 7 5.0939 5.6606 -6.7270 26 6 4.1661 4.0707 -4.4568 27 6 3.7505 3.2935 -3.3933 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 0.7089 1.1611 3.4845 32 1 2.1109 -1.6561 -1.1950 33 1 3.5399 1.8344 -1.2165 34 1 4.6459 0.5363 -1.7267 35 1 5.6635 0.5648 -3.9266 36 1 6.4038 1.9382 -5.8301 37 1 7.0143 3.0906 -7.3789 38 1 7.2484 5.0867 -9.0684 39 1 5.5863 7.0221 -8.2889 40 1 3.7469 5.0552 -4.6030 41 1 3.0065 3.6709 -2.7076 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884992586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:58 Heat of formation + Delta-G solvation = 12.616669 kcal Electronic energy + Delta-G solvation = -25745.435024 eV Core-core repulsion = 21946.448167 eV Total energy + Delta-G solvation = -3798.986858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51332 -40.33960 -38.15719 -37.25105 -36.92052 -35.39115 -34.09583 -32.49230 -31.98263 -31.00273 -30.10107 -27.82220 -27.21251 -24.32315 -23.89962 -22.82969 -21.62076 -21.56948 -20.29964 -19.31917 -19.17056 -18.00840 -17.57856 -17.18415 -16.70537 -16.42223 -16.30134 -16.26472 -16.03670 -15.35158 -14.93852 -14.69475 -14.52646 -14.42789 -14.07998 -13.95980 -13.74356 -13.57347 -13.45562 -13.22104 -13.11497 -13.02873 -12.92237 -12.78549 -12.37829 -12.33220 -12.27782 -12.17772 -11.95587 -11.70218 -11.28075 -11.03372 -10.56581 -10.20670 -10.18076 -10.02120 -9.06172 -8.12280 -6.27186 -0.83118 -0.17848 0.16176 1.12128 1.34505 1.48463 1.49843 1.56724 1.84601 1.92106 2.45598 2.55474 2.82666 3.17283 3.25602 3.35728 3.43629 3.71520 3.78019 3.95299 4.08138 4.17448 4.31340 4.42228 4.50876 4.56177 4.67995 4.73713 4.87038 4.92239 4.99918 5.07516 5.12727 5.13069 5.17709 5.31421 5.52306 5.60741 5.69964 5.74673 6.03285 6.10345 6.12467 6.43896 6.60993 6.84889 7.43234 8.92547 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.002505 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.201038 B =11176.532872 C =11394.245023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.275 3.725 3 H 0.031 0.969 4 C -0.539 4.539 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.961 3.039 9 H -0.289 1.289 10 H -0.273 1.273 11 H -0.268 1.268 12 N -1.104 6.104 13 S 2.611 3.389 14 O -0.988 6.988 15 O -0.993 6.993 16 C -0.568 4.568 17 C -0.113 4.113 18 C -0.080 4.080 19 C -0.133 4.133 20 C 0.153 3.847 21 N -0.340 5.340 22 C 0.045 3.955 23 C -0.262 4.262 24 C 0.053 3.947 25 N -0.340 5.340 26 C -0.132 4.132 27 C -0.092 4.092 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.415 0.585 33 H 0.149 0.851 34 H 0.172 0.828 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.212 0.788 38 H 0.185 0.815 39 H 0.218 0.782 40 H 0.137 0.863 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.492 5.278 -17.227 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.170 3.830 3 H 0.049 0.951 4 C -0.579 4.579 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.786 3.214 9 H -0.215 1.215 10 H -0.198 1.198 11 H -0.193 1.193 12 N -0.863 5.863 13 S 2.707 3.293 14 O -0.979 6.979 15 O -0.983 6.983 16 C -0.698 4.698 17 C -0.116 4.116 18 C -0.099 4.099 19 C -0.153 4.153 20 C 0.060 3.940 21 N -0.116 5.116 22 C -0.096 4.096 23 C -0.290 4.290 24 C -0.134 4.134 25 N -0.159 5.159 26 C -0.152 4.152 27 C -0.112 4.112 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.249 0.751 33 H 0.167 0.833 34 H 0.190 0.810 35 H 0.185 0.815 36 H 0.190 0.810 37 H 0.229 0.771 38 H 0.202 0.798 39 H 0.234 0.766 40 H 0.155 0.845 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 13.034 5.780 -16.980 22.172 hybrid contribution 0.755 -0.468 1.027 1.358 sum 13.790 5.313 -15.952 21.745 Atomic orbital electron populations 1.22162 0.99040 0.99702 1.00477 1.18294 0.91023 0.91742 0.81979 0.95127 1.21602 1.32048 1.13540 0.90664 0.90977 1.25690 0.95045 0.95642 1.01893 1.69993 1.36935 1.23811 1.24588 0.85571 0.78898 0.78555 0.78350 1.21461 1.19829 1.19271 1.55459 1.81480 1.19006 1.30402 1.04765 0.76610 0.74711 0.73218 1.93501 1.84936 1.58390 1.61043 1.93532 1.48218 1.71758 1.84792 1.29482 1.20504 1.13789 1.05999 1.19246 1.00450 0.95378 0.96500 1.21361 0.94878 1.01008 0.92686 1.21118 1.02611 0.91441 1.00141 1.17859 0.97256 0.91165 0.87745 1.46032 1.31769 1.12515 1.21241 1.23406 0.93423 1.02770 0.89976 1.22065 1.07572 0.93980 1.05400 1.24754 0.94149 1.01601 0.92847 1.77453 1.24861 0.93730 1.19833 1.20905 0.98025 1.01474 0.94789 1.21268 0.99079 0.93293 0.97524 0.94792 0.91079 0.95433 0.92571 0.75094 0.83293 0.80993 0.81539 0.81028 0.77137 0.79791 0.76572 0.84518 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 9.29 71.98 0.67 -6.82 16 2 C 0.28 12.75 2.66 44.24 0.12 12.87 16 3 H 0.03 1.47 7.15 -2.39 -0.02 1.45 16 4 C -0.54 -26.48 8.76 25.60 0.22 -26.25 16 5 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.91 -48.98 11.32 21.45 0.24 -48.74 16 8 Si 0.96 40.14 29.54 68.60 2.03 42.17 16 9 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 12 N -1.10 -42.43 5.35 -172.53 -0.92 -43.35 16 13 S 2.61 92.18 5.36 -56.49 -0.30 91.88 16 14 O -0.99 -36.66 18.08 -127.65 -2.31 -38.96 16 15 O -0.99 -42.37 17.11 -127.65 -2.18 -44.56 16 16 C -0.57 -15.50 6.09 71.24 0.43 -15.07 16 17 C -0.11 -2.98 5.14 -19.84 -0.10 -3.08 16 18 C -0.08 -1.71 9.69 22.25 0.22 -1.49 16 19 C -0.13 -2.54 9.46 22.38 0.21 -2.33 16 20 C 0.15 3.67 6.69 38.09 0.25 3.93 16 21 N -0.34 -7.67 3.80 -187.76 -0.71 -8.38 16 22 C 0.05 0.68 10.80 83.50 0.90 1.59 16 23 C -0.26 -3.43 10.81 22.00 0.24 -3.19 16 24 C 0.05 0.88 12.03 85.24 1.03 1.90 16 25 N -0.34 -8.27 11.87 -56.98 -0.68 -8.94 16 26 C -0.13 -3.53 9.66 22.38 0.22 -3.32 16 27 C -0.09 -2.53 9.69 22.25 0.22 -2.32 16 28 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 30 H 0.03 1.28 7.43 -2.38 -0.02 1.27 16 31 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 32 H 0.41 14.61 8.79 -96.74 -0.85 13.76 16 33 H 0.15 4.11 7.38 -2.39 -0.02 4.10 16 34 H 0.17 3.66 8.08 -2.39 -0.02 3.64 16 35 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.17 1.85 6.74 -2.91 -0.02 1.83 16 37 H 0.21 1.43 7.04 -2.91 -0.02 1.41 16 38 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.22 1.94 8.06 -2.91 -0.02 1.92 16 40 H 0.14 3.67 7.70 -2.91 -0.02 3.64 16 41 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -71.58 362.69 0.45 -71.14 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.22 Total: 30.00 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 5.07 Total: -42.25 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -2.07 Total: -109.42 kcal Atomic # 8 Polarization: -79.03 SS G_CDS: -4.49 Total: -83.52 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 92.18 SS G_CDS: -0.30 Total: 91.88 kcal Total: -71.58 0.45 -71.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884992586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.753 kcal (2) G-P(sol) polarization free energy of solvation -71.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds