Wall clock time and date at job start Tue Mar 31 2020 19:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46199 * 2 1 4 4 C 1.53235 * 109.47115 * 240.00392 * 2 1 3 5 5 S 1.81734 * 108.79647 * 182.34318 * 4 2 1 6 6 C 1.81744 * 102.31152 * 54.53870 * 5 4 2 7 7 C 1.53749 * 108.75012 * 305.34757 * 6 5 4 8 8 N 1.46377 * 109.20809 * 57.82869 * 7 6 5 9 9 C 1.34786 * 119.64597 * 114.91261 * 8 7 6 10 10 O 1.21358 * 119.99794 * 170.32222 * 9 8 7 11 11 C 1.49361 * 120.00066 * 350.32233 * 9 8 7 12 12 O 1.21358 * 119.99930 * 353.27831 * 11 9 8 13 13 N 1.34775 * 120.00329 * 173.27725 * 11 9 8 14 14 C 1.39108 * 120.00470 * 185.06565 * 13 11 9 15 15 C 1.39702 * 119.58225 * 174.40700 * 14 13 11 16 16 C 1.38654 * 119.49808 * 180.02562 * 15 14 13 17 17 C 1.38356 * 118.66920 * 359.97438 * 16 15 14 18 18 C 1.40594 * 119.13477 * 359.97438 * 17 16 15 19 19 C 1.41334 * 119.78384 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00322 * 0.02562 * 19 18 17 21 21 C 1.40038 * 119.99844 * 180.02562 * 19 18 17 22 22 N 1.30736 * 119.99614 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99666 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46717 * 90.00412 * 23 21 19 25 25 H 1.48501 * 109.47030 * 209.99910 * 23 21 19 26 26 H 1.48493 * 109.47619 * 330.00286 * 23 21 19 27 27 N 1.31941 * 119.57727 * 354.42854 * 14 13 11 28 28 H 1.08993 * 109.47221 * 296.30253 * 1 2 3 29 29 H 1.09000 * 109.46635 * 56.30125 * 1 2 3 30 30 H 1.08994 * 109.46979 * 176.29910 * 1 2 3 31 31 H 1.09005 * 109.58079 * 302.13563 * 4 2 1 32 32 H 1.08993 * 109.58509 * 62.54615 * 4 2 1 33 33 H 1.09005 * 109.57966 * 65.25063 * 6 5 4 34 34 H 1.08997 * 109.58251 * 185.52678 * 6 5 4 35 35 H 1.08993 * 109.61383 * 297.90681 * 7 6 5 36 36 H 1.09004 * 109.60754 * 177.74320 * 7 6 5 37 37 H 0.97004 * 119.99443 * 5.06596 * 13 11 9 38 38 H 1.07999 * 120.25156 * 0.04527 * 15 14 13 39 39 H 1.07994 * 120.66655 * 179.72898 * 16 15 14 40 40 H 1.07994 * 120.43090 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0409 -0.7223 -1.2512 5 16 3.8567 -0.7727 -1.1979 6 6 4.1758 -1.5417 0.4176 7 6 3.4483 -0.7313 1.5030 8 7 2.0179 -0.6898 1.1954 9 6 1.1399 -1.2883 2.0247 10 8 -0.0516 -1.1120 1.8767 11 6 1.6336 -2.1685 3.1257 12 8 2.8133 -2.4432 3.2004 13 7 0.7689 -2.6578 4.0364 14 6 1.2411 -3.3899 5.1210 15 6 0.3523 -3.7926 6.1208 16 6 0.8250 -4.5217 7.2012 17 6 2.1726 -4.8304 7.2552 18 6 3.0161 -4.3973 6.2171 19 6 4.3950 -4.7045 6.2587 20 1 4.7975 -5.2705 7.0856 21 6 5.2394 -4.2750 5.2274 22 7 4.7522 -3.5894 4.2265 23 14 7.0620 -4.6804 5.2827 24 1 7.3012 -5.9783 4.6018 25 1 7.8281 -3.6112 4.5932 26 1 7.5057 -4.7741 6.6967 27 7 2.5228 -3.6948 5.1924 28 1 -0.3633 0.4553 0.9212 29 1 -0.3632 0.5702 -0.8550 30 1 -0.3633 -1.0255 -0.0663 31 1 1.6476 -1.7387 -1.2724 32 1 1.7163 -0.1842 -2.1418 33 1 3.8049 -2.5667 0.4139 34 1 5.2474 -1.5415 0.6170 35 1 3.8440 0.2839 1.5285 36 1 3.5975 -1.2038 2.4739 37 1 -0.1828 -2.4995 3.9356 38 1 -0.6950 -3.5381 6.0524 39 1 0.1554 -4.8389 7.9869 40 1 2.5713 -5.3966 8.0839 41 1 5.3371 -3.2915 3.5123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889952591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:00 Heat of formation + Delta-G solvation = 33.925559 kcal Electronic energy + Delta-G solvation = -27534.226401 eV Core-core repulsion = 23736.163566 eV Total energy + Delta-G solvation = -3798.062835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.91387 -39.03198 -37.52263 -36.70621 -34.41997 -33.24953 -32.97373 -30.45973 -30.18011 -29.29501 -27.40546 -25.88091 -24.81907 -23.28502 -22.49839 -21.53559 -20.60832 -19.31778 -17.99748 -17.04484 -16.69890 -16.59417 -16.19088 -15.46977 -15.20259 -14.77047 -14.68826 -14.55136 -14.40065 -13.96691 -13.71153 -13.64724 -13.19119 -12.96639 -12.81423 -12.71581 -12.44078 -12.10796 -12.05179 -11.95238 -11.41283 -11.30031 -11.22430 -11.06190 -10.76181 -10.59349 -10.16105 -10.03645 -9.98794 -9.74717 -9.16783 -8.93093 -8.55601 -8.11217 -7.74367 -7.37102 -7.15404 -6.31193 -4.52492 1.65905 1.71523 2.43945 2.54636 2.73682 2.99861 3.09273 3.11653 3.17773 3.73066 3.77320 3.95805 4.51511 4.64397 4.78458 4.80769 4.96876 5.01844 5.16145 5.24686 5.38676 5.49317 5.69086 5.88620 5.91757 5.98965 6.00667 6.06356 6.19194 6.36557 6.48886 6.54636 6.70121 6.72530 7.10261 7.11406 7.34964 7.44919 7.68738 7.73667 7.94700 8.05756 8.28583 8.52792 8.82247 8.92661 10.04842 10.32479 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.004744 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.540993 B = 5901.141735 C = 8068.802378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.093 4.093 5 S -0.281 6.281 6 C -0.081 4.081 7 C 0.061 3.939 8 N -0.587 5.587 9 C 0.509 3.491 10 O -0.520 6.520 11 C 0.466 3.534 12 O -0.379 6.379 13 N -0.634 5.634 14 C 0.365 3.635 15 C -0.347 4.347 16 C -0.036 4.036 17 C -0.299 4.299 18 C 0.272 3.728 19 C -0.422 4.422 20 H 0.083 0.917 21 C 0.062 3.938 22 N -0.665 5.665 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.263 1.263 27 N -0.473 5.473 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.170 0.830 37 H 0.412 0.588 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.428 6.782 -8.717 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 H 0.106 0.894 4 C -0.242 4.242 5 S -0.053 6.053 6 C -0.230 4.230 7 C -0.061 4.061 8 N -0.322 5.322 9 C 0.293 3.707 10 O -0.397 6.397 11 C 0.244 3.756 12 O -0.244 6.244 13 N -0.281 5.281 14 C 0.127 3.873 15 C -0.373 4.373 16 C -0.060 4.060 17 C -0.322 4.322 18 C 0.147 3.853 19 C -0.453 4.453 20 H 0.102 0.898 21 C -0.167 4.167 22 N -0.284 5.284 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.187 1.187 27 N -0.192 5.192 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.092 0.908 36 H 0.185 0.815 37 H 0.248 0.752 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.725 7.434 -10.452 12.941 hybrid contribution -1.057 -0.796 1.248 1.820 sum -2.783 6.638 -9.203 11.683 Atomic orbital electron populations 1.22334 0.91565 1.03432 1.02058 1.21448 0.96505 0.95625 0.82915 0.89442 1.23942 0.94010 1.04727 1.01558 1.86776 1.07902 1.82158 1.28470 1.23878 1.04973 1.02095 0.92059 1.23242 0.77584 1.01389 1.03930 1.47823 1.08014 1.52950 1.23373 1.20788 0.86165 0.80433 0.83348 1.90769 1.16185 1.61086 1.71646 1.20291 0.87959 0.83601 0.83730 1.90862 1.13259 1.51203 1.69105 1.43014 1.10487 1.51801 1.22840 1.18539 0.91996 0.91291 0.85431 1.20511 0.98137 1.17944 1.00700 1.20592 0.94964 0.95021 0.95425 1.21669 0.94161 1.12949 1.03413 1.18346 0.93320 0.87561 0.86103 1.19595 0.91077 1.28941 1.05670 0.89846 1.26129 1.00282 0.94828 0.95425 1.70303 1.35027 1.18814 1.04228 0.86492 0.82879 0.78922 0.79554 1.19624 1.20195 1.18719 1.68620 1.07963 1.17623 1.24993 0.89667 0.93768 0.91187 0.89590 0.86886 0.89055 0.86601 0.90804 0.81456 0.75214 0.88729 0.88335 0.88343 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 7.55 37.16 0.28 -1.28 16 2 C 0.14 1.63 3.32 -67.87 -0.23 1.41 16 3 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.09 -1.02 5.95 37.28 0.22 -0.80 16 5 S -0.28 -3.52 22.29 -107.50 -2.40 -5.92 16 6 C -0.08 -1.08 6.68 37.55 0.25 -0.83 16 7 C 0.06 0.86 5.81 -3.72 -0.02 0.84 16 8 N -0.59 -8.23 2.78 -166.23 -0.46 -8.69 16 9 C 0.51 8.21 7.59 -11.62 -0.09 8.13 16 10 O -0.52 -8.45 11.69 5.49 0.06 -8.38 16 11 C 0.47 8.91 7.67 -11.63 -0.09 8.82 16 12 O -0.38 -8.09 8.90 5.49 0.05 -8.04 16 13 N -0.63 -12.32 5.37 -11.84 -0.06 -12.38 16 14 C 0.37 8.45 7.42 -155.09 -1.15 7.30 16 15 C -0.35 -7.47 9.95 -38.88 -0.39 -7.86 16 16 C -0.04 -0.77 10.15 -39.38 -0.40 -1.17 16 17 C -0.30 -7.12 9.83 -38.65 -0.38 -7.50 16 18 C 0.27 7.16 6.55 -85.00 -0.56 6.60 16 19 C -0.42 -10.87 9.14 -37.73 -0.34 -11.21 16 20 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 21 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 22 N -0.66 -16.38 8.99 55.55 0.50 -15.88 16 23 Si 0.90 17.94 29.56 -169.99 -5.02 12.91 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 27 N -0.47 -12.30 5.73 -10.28 -0.06 -12.36 16 28 H 0.08 1.12 6.45 -51.93 -0.34 0.78 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.91 6.89 -51.93 -0.36 0.55 16 31 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 34 H 0.12 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.17 2.85 4.14 -55.70 -0.23 2.62 16 37 H 0.41 6.84 8.18 -40.82 -0.33 6.51 16 38 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 41 H 0.27 6.10 8.29 -40.82 -0.34 5.76 16 LS Contribution 342.73 15.07 5.16 5.16 Total: -1.00 -27.91 342.73 -10.25 -38.16 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -2.99 Total: 3.84 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.09 Total: -49.31 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.11 Total: -16.43 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.40 Total: -5.92 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.91 -10.25 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889952591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.084 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds