Wall clock time and date at job start Tue Mar 31 2020 19:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46199 * 2 1 4 4 C 1.53235 * 109.47115 * 240.00392 * 2 1 3 5 5 S 1.81734 * 108.79647 * 182.34318 * 4 2 1 6 6 C 1.81744 * 102.31152 * 54.53870 * 5 4 2 7 7 C 1.53749 * 108.75012 * 305.34757 * 6 5 4 8 8 N 1.46377 * 109.20809 * 57.82869 * 7 6 5 9 9 C 1.34786 * 119.64597 * 114.91261 * 8 7 6 10 10 O 1.21358 * 119.99794 * 170.32222 * 9 8 7 11 11 C 1.49361 * 120.00066 * 350.32233 * 9 8 7 12 12 O 1.21358 * 119.99930 * 353.27831 * 11 9 8 13 13 N 1.34775 * 120.00329 * 173.27725 * 11 9 8 14 14 C 1.39108 * 120.00470 * 185.06565 * 13 11 9 15 15 C 1.39702 * 119.58225 * 174.40700 * 14 13 11 16 16 C 1.38654 * 119.49808 * 180.02562 * 15 14 13 17 17 C 1.38356 * 118.66920 * 359.97438 * 16 15 14 18 18 C 1.40594 * 119.13477 * 359.97438 * 17 16 15 19 19 C 1.41334 * 119.78384 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00322 * 0.02562 * 19 18 17 21 21 C 1.40038 * 119.99844 * 180.02562 * 19 18 17 22 22 N 1.30736 * 119.99614 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99666 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46717 * 90.00412 * 23 21 19 25 25 H 1.48501 * 109.47030 * 209.99910 * 23 21 19 26 26 H 1.48493 * 109.47619 * 330.00286 * 23 21 19 27 27 N 1.31941 * 119.57727 * 354.42854 * 14 13 11 28 28 H 1.08993 * 109.47221 * 296.30253 * 1 2 3 29 29 H 1.09000 * 109.46635 * 56.30125 * 1 2 3 30 30 H 1.08994 * 109.46979 * 176.29910 * 1 2 3 31 31 H 1.09005 * 109.58079 * 302.13563 * 4 2 1 32 32 H 1.08993 * 109.58509 * 62.54615 * 4 2 1 33 33 H 1.09005 * 109.57966 * 65.25063 * 6 5 4 34 34 H 1.08997 * 109.58251 * 185.52678 * 6 5 4 35 35 H 1.08993 * 109.61383 * 297.90681 * 7 6 5 36 36 H 1.09004 * 109.60754 * 177.74320 * 7 6 5 37 37 H 0.97004 * 119.99443 * 5.06596 * 13 11 9 38 38 H 1.07999 * 120.25156 * 0.04527 * 15 14 13 39 39 H 1.07994 * 120.66655 * 179.72898 * 16 15 14 40 40 H 1.07994 * 120.43090 * 179.97438 * 17 16 15 41 41 H 0.97006 * 119.99795 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0409 -0.7223 -1.2512 5 16 3.8567 -0.7727 -1.1979 6 6 4.1758 -1.5417 0.4176 7 6 3.4483 -0.7313 1.5030 8 7 2.0179 -0.6898 1.1954 9 6 1.1399 -1.2883 2.0247 10 8 -0.0516 -1.1120 1.8767 11 6 1.6336 -2.1685 3.1257 12 8 2.8133 -2.4432 3.2004 13 7 0.7689 -2.6578 4.0364 14 6 1.2411 -3.3899 5.1210 15 6 0.3523 -3.7926 6.1208 16 6 0.8250 -4.5217 7.2012 17 6 2.1726 -4.8304 7.2552 18 6 3.0161 -4.3973 6.2171 19 6 4.3950 -4.7045 6.2587 20 1 4.7975 -5.2705 7.0856 21 6 5.2394 -4.2750 5.2274 22 7 4.7522 -3.5894 4.2265 23 14 7.0620 -4.6804 5.2827 24 1 7.3012 -5.9783 4.6018 25 1 7.8281 -3.6112 4.5932 26 1 7.5057 -4.7741 6.6967 27 7 2.5228 -3.6948 5.1924 28 1 -0.3633 0.4553 0.9212 29 1 -0.3632 0.5702 -0.8550 30 1 -0.3633 -1.0255 -0.0663 31 1 1.6476 -1.7387 -1.2724 32 1 1.7163 -0.1842 -2.1418 33 1 3.8049 -2.5667 0.4139 34 1 5.2474 -1.5415 0.6170 35 1 3.8440 0.2839 1.5285 36 1 3.5975 -1.2038 2.4739 37 1 -0.1828 -2.4995 3.9356 38 1 -0.6950 -3.5381 6.0524 39 1 0.1554 -4.8389 7.9869 40 1 2.5713 -5.3966 8.0839 41 1 5.3371 -3.2915 3.5123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889952591.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:59 Heat of formation + Delta-G solvation = 18.833358 kcal Electronic energy + Delta-G solvation = -27534.880848 eV Core-core repulsion = 23736.163566 eV Total energy + Delta-G solvation = -3798.717282 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22808 -40.58788 -39.14230 -37.92158 -36.04356 -34.91409 -34.10542 -32.25397 -31.35552 -31.01182 -28.35823 -27.62058 -26.24616 -24.42158 -23.94116 -23.20410 -22.07206 -20.75191 -19.60538 -18.49593 -18.15492 -17.73779 -17.53378 -16.72544 -16.54415 -16.34651 -16.28374 -15.96057 -15.56754 -15.48339 -15.22784 -14.82695 -14.66235 -14.36649 -14.10064 -13.84684 -13.74383 -13.58982 -13.34485 -13.07354 -12.87942 -12.73751 -12.56096 -12.45651 -12.35513 -12.26998 -11.77025 -11.62031 -11.24883 -11.00849 -10.85840 -10.06381 -9.95116 -9.91699 -9.10185 -8.91855 -8.73126 -8.08516 -6.40722 0.30014 0.67180 1.02063 1.26028 1.29570 1.43383 1.44823 1.53780 1.56730 2.28536 2.29529 2.39715 2.98758 3.28858 3.57085 3.76028 3.93327 4.02363 4.03466 4.09153 4.30346 4.32923 4.40792 4.59744 4.64588 4.77134 4.80617 4.84151 4.88234 4.95024 5.04626 5.06484 5.13076 5.33105 5.53265 5.64189 5.75936 5.88365 5.92193 6.09718 6.27403 6.47639 6.69916 6.80827 7.05493 7.27639 8.24676 8.56005 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.004744 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.540993 B = 5901.141735 C = 8068.802378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.138 3.862 3 H 0.106 0.894 4 C -0.087 4.087 5 S -0.279 6.279 6 C -0.077 4.077 7 C 0.067 3.933 8 N -0.581 5.581 9 C 0.516 3.484 10 O -0.521 6.521 11 C 0.456 3.544 12 O -0.402 6.402 13 N -0.630 5.630 14 C 0.347 3.653 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.323 4.323 18 C 0.239 3.761 19 C -0.460 4.460 20 H 0.084 0.916 21 C 0.020 3.980 22 N -0.688 5.688 23 Si 0.970 3.030 24 H -0.270 1.270 25 H -0.268 1.268 26 H -0.261 1.261 27 N -0.500 5.500 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.141 0.859 37 H 0.424 0.576 38 H 0.128 0.872 39 H 0.137 0.863 40 H 0.106 0.894 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 7.951 -9.998 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.035 3.965 3 H 0.124 0.876 4 C -0.235 4.235 5 S -0.051 6.051 6 C -0.226 4.226 7 C -0.056 4.056 8 N -0.315 5.315 9 C 0.299 3.701 10 O -0.399 6.399 11 C 0.235 3.765 12 O -0.269 6.269 13 N -0.279 5.279 14 C 0.109 3.891 15 C -0.369 4.369 16 C -0.058 4.058 17 C -0.346 4.346 18 C 0.114 3.886 19 C -0.491 4.491 20 H 0.102 0.898 21 C -0.206 4.206 22 N -0.307 5.307 23 Si 0.791 3.209 24 H -0.195 1.195 25 H -0.193 1.193 26 H -0.185 1.185 27 N -0.220 5.220 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.161 0.839 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.157 0.843 37 H 0.262 0.738 38 H 0.146 0.854 39 H 0.154 0.846 40 H 0.124 0.876 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.351 8.625 -11.756 14.769 hybrid contribution -1.015 -1.111 1.607 2.202 sum -3.366 7.514 -10.149 13.069 Atomic orbital electron populations 1.22196 0.91109 1.02691 1.02626 1.21691 0.96802 0.96207 0.81835 0.87638 1.24000 0.92581 1.04658 1.02307 1.86784 1.09410 1.81659 1.27278 1.23737 1.05233 1.00829 0.92830 1.23048 0.77756 1.02074 1.02742 1.47865 1.07714 1.52231 1.23643 1.20190 0.86313 0.80536 0.83056 1.90789 1.16062 1.61352 1.71660 1.20939 0.87732 0.83680 0.84173 1.90899 1.14271 1.51817 1.69864 1.43005 1.11253 1.51394 1.22254 1.18973 0.91776 0.91520 0.86795 1.20939 0.99532 1.16563 0.99821 1.21024 0.94606 0.93910 0.96213 1.21848 0.95286 1.13997 1.03473 1.18801 0.94303 0.88347 0.87157 1.19883 0.91806 1.30560 1.06809 0.89782 1.26852 1.04335 0.94596 0.94821 1.70417 1.36549 1.19135 1.04577 0.85397 0.77397 0.78638 0.79440 1.19519 1.19283 1.18536 1.68590 1.09548 1.18409 1.25449 0.91251 0.90631 0.92872 0.90428 0.83900 0.91222 0.85968 0.89030 0.84262 0.73791 0.85441 0.84564 0.87598 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 7.55 71.98 0.54 -2.08 16 2 C 0.14 2.89 3.32 45.10 0.15 3.04 16 3 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.09 -1.67 5.95 72.06 0.43 -1.24 16 5 S -0.28 -6.47 22.29 -56.49 -1.26 -7.73 16 6 C -0.08 -2.04 6.68 72.23 0.48 -1.56 16 7 C 0.07 1.85 5.81 86.65 0.50 2.36 16 8 N -0.58 -15.73 2.78 -798.19 -2.22 -17.95 16 9 C 0.52 16.52 7.59 87.24 0.66 17.18 16 10 O -0.52 -16.49 11.69 -3.27 -0.04 -16.53 16 11 C 0.46 17.77 7.67 87.24 0.67 18.44 16 12 O -0.40 -17.85 8.90 -3.27 -0.03 -17.88 16 13 N -0.63 -24.67 5.37 -309.72 -1.66 -26.33 16 14 C 0.35 16.24 7.42 133.30 0.99 17.23 16 15 C -0.34 -14.39 9.95 22.72 0.23 -14.16 16 16 C -0.03 -1.41 10.15 22.40 0.23 -1.18 16 17 C -0.32 -15.64 9.83 22.87 0.22 -15.41 16 18 C 0.24 13.05 6.55 40.20 0.26 13.31 16 19 C -0.46 -24.61 9.14 23.47 0.21 -24.39 16 20 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 21 C 0.02 1.00 5.50 85.29 0.47 1.47 16 22 N -0.69 -35.13 8.99 21.84 0.20 -34.93 16 23 Si 0.97 37.70 29.56 68.60 2.03 39.73 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 N -0.50 -26.85 5.73 -186.43 -1.07 -27.92 16 28 H 0.07 1.68 6.45 -2.39 -0.02 1.66 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.29 6.89 -2.39 -0.02 1.27 16 31 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.14 4.90 4.14 -62.10 -0.26 4.64 16 37 H 0.42 13.88 8.18 -92.71 -0.76 13.12 16 38 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.14 4.61 8.06 -2.91 -0.02 4.59 16 40 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 41 H 0.27 12.84 8.29 -92.70 -0.77 12.07 16 Total: -1.00 -62.11 342.73 2.07 -60.04 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.07 Total: 36.50 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.05 Total: 13.00 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -4.76 Total: -107.13 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.07 Total: -34.41 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Atomic # 16 Polarization: -6.47 SS G_CDS: -1.26 Total: -7.73 kcal Total: -62.11 2.07 -60.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889952591.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.872 kcal (2) G-P(sol) polarization free energy of solvation -62.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds