Wall clock time and date at job start Tue Mar 31 2020 19:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 108.71574 * 2 1 4 4 C 1.54255 * 108.86889 * 118.47209 * 2 1 3 5 5 S 1.83953 * 102.58546 * 145.34332 * 4 2 1 6 6 C 1.83960 * 94.80478 * 325.50483 * 5 4 2 7 7 C 1.52337 * 108.86507 * 241.54192 * 2 1 3 8 8 H 1.08999 * 108.86975 * 118.51101 * 7 2 1 9 9 N 1.46499 * 108.86870 * 0.02562 * 7 2 1 10 10 C 1.34781 * 120.00306 * 152.40936 * 9 7 2 11 11 O 1.21358 * 119.99844 * 359.97438 * 10 9 7 12 12 C 1.49362 * 120.00083 * 179.97438 * 10 9 7 13 13 O 1.21356 * 120.00159 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99812 * 179.97438 * 12 10 9 15 15 C 1.39119 * 120.00172 * 184.81612 * 14 12 10 16 16 C 1.39707 * 119.57962 * 174.16405 * 15 14 12 17 17 C 1.38645 * 119.49242 * 179.72150 * 16 15 14 18 18 C 1.38347 * 118.67338 * 0.02562 * 17 16 15 19 19 C 1.40594 * 119.13769 * 0.02562 * 18 17 16 20 20 C 1.41334 * 119.79083 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99697 * 359.97438 * 20 19 18 22 22 C 1.40031 * 120.00317 * 180.02562 * 20 19 18 23 23 N 1.30737 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00116 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.46842 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47170 * 119.99703 * 24 22 20 27 27 H 1.48503 * 109.46795 * 240.00002 * 24 22 20 28 28 N 1.31940 * 119.57403 * 353.89284 * 15 14 12 29 29 H 1.08994 * 109.47814 * 186.21205 * 1 2 3 30 30 H 1.09005 * 109.46501 * 306.20838 * 1 2 3 31 31 H 1.08997 * 109.47213 * 66.20120 * 1 2 3 32 32 H 1.09002 * 110.78543 * 263.61714 * 4 2 1 33 33 H 1.08999 * 110.78946 * 26.87864 * 4 2 1 34 34 H 1.08998 * 110.78512 * 276.21833 * 6 5 4 35 35 H 1.08994 * 110.78735 * 152.76579 * 6 5 4 36 36 H 0.97001 * 119.99845 * 332.40953 * 9 7 2 37 37 H 0.96997 * 120.00563 * 4.82345 * 14 12 10 38 38 H 1.08003 * 120.25302 * 359.70138 * 16 15 14 39 39 H 1.07997 * 120.66498 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.43468 * 179.97438 * 18 17 16 41 41 H 0.96996 * 119.99952 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8797 1.0323 0.0000 4 6 2.0289 -0.6959 1.2831 5 16 3.5559 -1.5464 0.7100 6 6 2.9046 -1.9170 -0.9701 7 6 2.0226 -0.6869 -1.2673 8 1 2.6024 0.0268 -1.8526 9 7 0.8640 -1.1136 -2.0559 10 6 0.9643 -1.2246 -3.3954 11 8 2.0143 -0.9706 -3.9483 12 6 -0.2169 -1.6601 -4.1992 13 8 -1.2670 -1.9137 -3.6463 14 7 -0.1167 -1.7706 -5.5387 15 6 -1.2414 -2.0786 -6.2973 16 6 -1.1559 -2.0707 -7.6918 17 6 -2.2764 -2.3836 -8.4460 18 6 -3.4531 -2.6957 -7.7888 19 6 -3.4756 -2.6852 -6.3830 20 6 -4.6704 -3.0013 -5.6975 21 1 -5.5624 -3.2494 -6.2534 22 6 -4.6979 -2.9916 -4.2975 23 7 -3.6182 -2.6907 -3.6245 24 14 -6.2769 -3.4101 -3.3914 25 1 -7.3471 -3.7126 -4.3756 26 1 -6.0514 -4.5948 -2.5250 27 1 -6.6878 -2.2549 -2.5535 28 7 -2.3737 -2.3796 -5.6906 29 1 -0.3634 -1.0215 0.1112 30 1 -0.3632 0.6071 0.8293 31 1 -0.3633 0.4147 -0.9402 32 1 2.2612 0.0374 2.0555 33 1 1.2939 -1.4155 1.6437 34 1 2.3069 -2.8285 -0.9608 35 1 3.7176 -1.9936 -1.6919 36 1 0.0246 -1.3163 -1.6139 37 1 0.7396 -1.6354 -5.9738 38 1 -0.2243 -1.8225 -8.1785 39 1 -2.2318 -2.3830 -9.5251 40 1 -4.3431 -2.9433 -8.3482 41 1 -3.6371 -2.6844 -2.6548 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890279807.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:44 Heat of formation + Delta-G solvation = -15.659014 kcal Electronic energy + Delta-G solvation = -26623.664035 eV Core-core repulsion = 22823.451051 eV Total energy + Delta-G solvation = -3800.212983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88855 -40.54537 -39.17952 -38.38971 -36.13346 -34.98445 -34.02581 -32.27082 -31.40949 -31.03884 -28.33213 -27.62413 -26.31020 -24.94907 -23.51746 -22.89540 -21.26437 -20.65455 -20.00855 -18.96660 -18.19722 -17.66244 -17.61754 -16.87537 -16.50295 -16.37845 -16.28559 -16.16544 -15.60208 -15.41833 -15.05937 -14.76494 -14.69982 -14.62344 -13.86757 -13.77363 -13.64011 -13.31332 -12.93591 -12.89344 -12.88528 -12.74552 -12.58122 -12.55375 -12.31751 -12.10156 -11.88448 -11.73898 -11.60999 -11.12508 -10.92312 -10.61997 -10.36572 -9.93516 -9.20802 -8.92389 -8.83027 -8.09067 -6.42397 0.34104 0.72775 1.01134 1.19089 1.27848 1.42798 1.43595 1.54148 1.56747 2.27986 2.35486 2.65048 2.97950 3.29766 3.47971 3.53467 3.71815 3.93800 4.01451 4.04095 4.32713 4.36412 4.49072 4.56018 4.63168 4.66491 4.67403 4.81661 4.91217 4.94271 4.98522 5.01748 5.16396 5.24783 5.27040 5.62915 5.70471 5.89426 5.95496 6.14125 6.28394 6.53093 6.69378 6.81895 7.04176 7.27994 8.24584 8.55571 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.003493 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.507355 B = 8014.760813 C = 9753.423928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 H 0.112 0.888 4 C -0.049 4.049 5 S -0.321 6.321 6 C -0.071 4.071 7 C 0.145 3.855 8 H 0.100 0.900 9 N -0.687 5.687 10 C 0.520 3.480 11 O -0.540 6.540 12 C 0.460 3.540 13 O -0.419 6.419 14 N -0.633 5.633 15 C 0.347 3.653 16 C -0.343 4.343 17 C -0.034 4.034 18 C -0.322 4.322 19 C 0.237 3.763 20 C -0.461 4.461 21 H 0.086 0.914 22 C 0.016 3.984 23 N -0.693 5.693 24 Si 0.975 3.025 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.269 1.269 28 N -0.504 5.504 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.420 0.580 37 H 0.424 0.576 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.422 5.176 10.465 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.116 4.116 3 H 0.130 0.870 4 C -0.197 4.197 5 S -0.094 6.094 6 C -0.221 4.221 7 C 0.039 3.961 8 H 0.118 0.882 9 N -0.345 5.345 10 C 0.300 3.700 11 O -0.418 6.418 12 C 0.237 3.763 13 O -0.283 6.283 14 N -0.282 5.282 15 C 0.109 3.891 16 C -0.368 4.368 17 C -0.058 4.058 18 C -0.345 4.345 19 C 0.112 3.888 20 C -0.491 4.491 21 H 0.104 0.896 22 C -0.210 4.210 23 N -0.312 5.312 24 Si 0.796 3.204 25 H -0.182 1.182 26 H -0.195 1.195 27 H -0.193 1.193 28 N -0.224 5.224 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.263 0.737 37 H 0.262 0.738 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.538 4.974 12.263 16.917 hybrid contribution -1.460 -0.170 -1.447 2.062 sum 9.078 4.804 10.817 14.916 Atomic orbital electron populations 1.22011 0.93201 1.02956 1.03429 1.21825 0.97664 1.01604 0.90557 0.86981 1.24399 0.94124 1.01579 0.99574 1.88200 1.26965 1.77215 1.17011 1.24586 1.01820 1.00740 0.94913 1.21866 0.85548 0.95231 0.93409 0.88177 1.46390 1.16577 1.66407 1.05125 1.20188 0.87688 0.78039 0.84088 1.90701 1.29890 1.49556 1.71607 1.20732 0.89615 0.81922 0.83982 1.91207 1.27505 1.40194 1.69428 1.42982 1.11017 1.68117 1.06134 1.18992 0.88008 0.93950 0.88128 1.20959 1.01184 1.23124 0.91541 1.21040 0.91668 0.93688 0.99365 1.21851 0.99349 1.18093 0.95220 1.18855 0.91520 0.88996 0.89476 1.19937 0.95938 1.40768 0.92484 0.89579 1.26953 1.00684 0.94607 0.98712 1.70451 1.27629 1.25279 1.07889 0.85270 0.78247 0.78477 0.78404 1.18182 1.19510 1.19349 1.68602 0.97480 1.19491 1.36859 0.91899 0.89366 0.92533 0.85108 0.87939 0.89064 0.87515 0.73732 0.73766 0.85314 0.84381 0.87434 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 7.62 71.98 0.55 -1.73 16 2 C -0.10 -1.34 3.17 -10.59 -0.03 -1.37 16 3 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 4 C -0.05 -0.61 6.92 72.41 0.50 -0.11 16 5 S -0.32 -6.14 23.27 -56.49 -1.31 -7.46 16 6 C -0.07 -1.46 7.07 72.41 0.51 -0.95 16 7 C 0.15 2.86 2.92 45.20 0.13 2.99 16 8 H 0.10 2.15 7.50 -2.39 -0.02 2.13 16 9 N -0.69 -17.04 4.08 -442.97 -1.81 -18.84 16 10 C 0.52 16.52 7.84 87.24 0.68 17.20 16 11 O -0.54 -17.97 16.11 -3.27 -0.05 -18.02 16 12 C 0.46 18.39 7.84 87.24 0.68 19.07 16 13 O -0.42 -19.60 12.25 -3.27 -0.04 -19.64 16 14 N -0.63 -25.51 5.37 -309.71 -1.66 -27.17 16 15 C 0.35 16.67 7.42 133.30 0.99 17.66 16 16 C -0.34 -14.65 9.96 22.72 0.23 -14.43 16 17 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 18 C -0.32 -15.81 9.83 22.87 0.22 -15.58 16 19 C 0.24 13.21 6.55 40.20 0.26 13.47 16 20 C -0.46 -25.09 9.14 23.47 0.21 -24.88 16 21 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 22 C 0.02 0.82 5.50 85.29 0.47 1.29 16 23 N -0.69 -36.85 9.00 21.84 0.20 -36.65 16 24 Si 0.97 38.18 29.56 68.60 2.03 40.21 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 27 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 28 N -0.50 -27.93 5.74 -186.42 -1.07 -29.00 16 29 H 0.06 0.96 7.13 -2.39 -0.02 0.94 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 1.05 7.12 -2.39 -0.02 1.03 16 32 H 0.13 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.18 7.78 -2.39 -0.02 1.16 16 34 H 0.09 1.96 8.05 -2.39 -0.02 1.94 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.42 10.34 5.19 -92.71 -0.48 9.85 16 37 H 0.42 14.32 8.17 -92.71 -0.76 13.56 16 38 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 40 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 41 H 0.27 13.34 8.29 -92.71 -0.77 12.57 16 Total: -1.00 -67.78 352.43 1.77 -66.01 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -0.15 Total: 39.14 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 5.64 Total: 11.43 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -4.34 Total: -111.67 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.09 Total: -37.66 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Atomic # 16 Polarization: -6.14 SS G_CDS: -1.31 Total: -7.46 kcal Total: -67.78 1.77 -66.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890279807.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.352 kcal (2) G-P(sol) polarization free energy of solvation -67.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds