Wall clock time and date at job start Tue Mar 31 2020 19:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 108.71218 * 2 1 4 4 C 1.54268 * 108.86989 * 241.53998 * 2 1 3 5 5 S 1.83957 * 102.58044 * 214.64903 * 4 2 1 6 6 C 1.83961 * 94.80778 * 34.49604 * 5 4 2 7 7 C 1.52331 * 108.87195 * 118.46391 * 2 1 3 8 8 H 1.09000 * 108.75719 * 241.56191 * 7 2 1 9 9 N 1.46506 * 108.86816 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00009 * 215.41955 * 9 7 2 11 11 O 1.21355 * 120.00475 * 0.02562 * 10 9 7 12 12 C 1.49372 * 119.99914 * 179.97438 * 10 9 7 13 13 O 1.21355 * 119.99611 * 0.02562 * 12 10 9 14 14 N 1.34771 * 119.99914 * 179.97438 * 12 10 9 15 15 C 1.39119 * 119.99783 * 185.29801 * 14 12 10 16 16 C 1.39713 * 119.57446 * 174.34576 * 15 14 12 17 17 C 1.38652 * 119.48692 * 180.02562 * 16 15 14 18 18 C 1.38345 * 118.67405 * 0.02562 * 17 16 15 19 19 C 1.40593 * 119.13668 * 0.02562 * 18 17 16 20 20 C 1.41335 * 119.78435 * 180.02562 * 19 18 17 21 21 H 1.08001 * 120.00189 * 359.97438 * 20 19 18 22 22 C 1.40030 * 119.99749 * 179.97438 * 20 19 18 23 23 N 1.30740 * 120.00184 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99813 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47074 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47143 * 120.00163 * 24 22 20 27 27 H 1.48503 * 109.46776 * 240.00128 * 24 22 20 28 28 N 1.31926 * 119.57787 * 354.36682 * 15 14 12 29 29 H 1.08995 * 109.47156 * 295.85465 * 1 2 3 30 30 H 1.09000 * 109.47299 * 55.86076 * 1 2 3 31 31 H 1.09003 * 109.46847 * 175.86147 * 1 2 3 32 32 H 1.08993 * 110.78479 * 96.37641 * 4 2 1 33 33 H 1.08996 * 110.94533 * 332.99736 * 4 2 1 34 34 H 1.09001 * 110.78212 * 207.23664 * 6 5 4 35 35 H 1.08994 * 110.78830 * 83.77543 * 6 5 4 36 36 H 0.96998 * 119.99290 * 35.41930 * 9 7 2 37 37 H 0.96999 * 120.00016 * 5.30122 * 14 12 10 38 38 H 1.07991 * 120.25469 * 359.72135 * 16 15 14 39 39 H 1.07997 * 120.65942 * 179.97438 * 17 16 15 40 40 H 1.08003 * 120.43020 * 179.97438 * 18 17 16 41 41 H 0.96996 * 120.00116 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8796 1.0324 0.0000 4 6 2.0288 -0.6956 -1.2834 5 16 3.5560 -1.5461 -0.7103 6 6 2.9048 -1.9171 0.9697 7 6 2.0226 -0.6870 1.2672 8 1 2.6011 0.0286 1.8515 9 7 0.8641 -1.1138 2.0558 10 6 0.9136 -1.0741 3.4020 11 8 1.9177 -0.6842 3.9611 12 6 -0.2678 -1.5087 4.2061 13 8 -1.2721 -1.8981 3.6470 14 7 -0.2180 -1.4694 5.5523 15 6 -1.2742 -1.9765 6.3024 16 6 -1.1637 -2.0403 7.6937 17 6 -2.2173 -2.5464 8.4396 18 6 -3.3533 -2.9762 7.7772 19 6 -3.4031 -2.8870 6.3750 20 6 -4.5572 -3.3216 5.6845 21 1 -5.3969 -3.7210 6.2338 22 6 -4.6118 -3.2342 4.2879 23 7 -3.5952 -2.7512 3.6229 24 14 -6.1374 -3.8080 3.3753 25 1 -7.1384 -4.3096 4.3508 26 1 -6.7146 -2.6719 2.6128 27 1 -5.7716 -4.8991 2.4367 28 7 -2.3671 -2.3913 5.6909 29 1 -0.3633 0.4481 0.9248 30 1 -0.3634 0.5767 -0.8506 31 1 -0.3633 -1.0250 -0.0742 32 1 2.2610 0.0377 -2.0555 33 1 1.2966 -1.4175 -1.6451 34 1 3.7179 -1.9936 1.6916 35 1 2.3071 -2.8285 0.9604 36 1 0.0614 -1.4250 1.6089 37 1 0.5542 -1.0876 5.9981 38 1 -0.2628 -1.7025 8.1840 39 1 -2.1520 -2.6048 9.5160 40 1 -4.1906 -3.3758 8.3301 41 1 -3.6332 -2.6904 2.6555 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890279808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:47 Heat of formation + Delta-G solvation = 1.230037 kcal Electronic energy + Delta-G solvation = -26618.375696 eV Core-core repulsion = 22818.895077 eV Total energy + Delta-G solvation = -3799.480619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.54787 -39.03153 -37.70292 -37.09499 -34.44809 -33.33055 -32.86125 -30.51536 -30.40603 -29.25604 -27.54126 -25.86442 -25.03833 -23.84516 -21.84369 -21.24225 -19.84245 -19.73755 -18.44459 -17.38293 -16.92787 -16.57693 -16.20168 -15.56746 -15.34546 -15.10893 -14.74694 -14.52547 -14.34810 -13.93557 -13.78740 -13.57335 -13.39529 -12.95441 -12.88953 -12.52840 -12.19864 -12.16955 -12.07049 -12.01011 -11.41444 -11.25854 -11.20655 -11.03009 -10.99421 -10.71499 -10.56816 -10.32409 -9.99812 -9.85913 -9.30512 -9.14701 -9.07565 -8.07834 -8.02057 -7.38679 -7.10927 -6.26989 -4.49368 1.52814 1.77130 1.98061 2.69520 2.77040 3.03707 3.10861 3.14388 3.19044 3.85305 3.97035 3.98604 4.09083 4.27232 4.49045 4.67301 4.81971 4.84784 4.92195 5.06938 5.11744 5.28075 5.39131 5.47294 5.60355 5.75761 5.92456 5.92608 6.02656 6.20366 6.38940 6.52920 6.70364 6.75798 7.10209 7.15878 7.42844 7.48094 7.72307 7.81848 7.97420 8.09957 8.32231 8.57270 8.87670 8.96725 10.09562 10.36508 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003492 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.497148 B = 8015.329782 C = 9718.903816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 H 0.095 0.905 4 C -0.062 4.062 5 S -0.294 6.294 6 C -0.076 4.076 7 C 0.143 3.857 8 H 0.109 0.891 9 N -0.703 5.703 10 C 0.509 3.491 11 O -0.531 6.531 12 C 0.466 3.534 13 O -0.386 6.386 14 N -0.638 5.638 15 C 0.368 3.632 16 C -0.348 4.348 17 C -0.036 4.036 18 C -0.300 4.300 19 C 0.271 3.729 20 C -0.423 4.423 21 H 0.084 0.916 22 C 0.060 3.940 23 N -0.663 5.663 24 Si 0.897 3.103 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.275 1.275 28 N -0.474 5.474 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.417 0.583 37 H 0.412 0.588 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.914 4.815 -9.509 13.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.125 4.125 3 H 0.113 0.887 4 C -0.210 4.210 5 S -0.067 6.067 6 C -0.225 4.225 7 C 0.036 3.964 8 H 0.127 0.873 9 N -0.361 5.361 10 C 0.290 3.710 11 O -0.407 6.407 12 C 0.243 3.757 13 O -0.249 6.249 14 N -0.286 5.286 15 C 0.130 3.870 16 C -0.374 4.374 17 C -0.060 4.060 18 C -0.323 4.323 19 C 0.146 3.854 20 C -0.454 4.454 21 H 0.102 0.898 22 C -0.168 4.168 23 N -0.282 5.282 24 Si 0.722 3.278 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.200 1.200 28 N -0.194 5.194 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.115 0.885 36 H 0.258 0.742 37 H 0.247 0.753 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.974 4.634 -11.297 15.766 hybrid contribution -1.439 -0.046 1.104 1.815 sum 8.534 4.588 -10.192 14.063 Atomic orbital electron populations 1.22005 0.93209 1.02742 1.03383 1.21877 0.97876 1.01075 0.91637 0.88665 1.24291 0.95762 1.01356 0.99599 1.88078 1.24956 1.76546 1.17157 1.24698 1.02058 1.01072 0.94669 1.21669 0.86655 0.95387 0.92689 0.87267 1.46284 1.18292 1.65837 1.05662 1.20954 0.88737 0.77927 0.83338 1.90699 1.33192 1.45683 1.71117 1.20079 0.88288 0.83375 0.84004 1.91214 1.28133 1.36456 1.69066 1.42985 1.20751 1.59672 1.05224 1.18537 0.88355 0.93294 0.86862 1.20517 1.02140 1.22423 0.92303 1.20590 0.92998 0.95126 0.97308 1.21658 0.99577 1.15134 0.95927 1.18369 0.90773 0.88264 0.88001 1.19631 0.99734 1.34566 0.91456 0.89782 1.26159 0.97081 0.95145 0.98463 1.70316 1.26098 1.23958 1.07859 0.86433 0.82380 0.79021 0.79990 1.18535 1.20017 1.20024 1.68631 0.98432 1.16671 1.35627 0.90904 0.91575 0.91743 0.87418 0.88724 0.87008 0.88457 0.74187 0.75295 0.88706 0.88334 0.88348 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.65 37.15 0.28 -0.99 16 2 C -0.10 -0.84 3.17 -90.30 -0.29 -1.13 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 4 C -0.06 -0.47 6.92 37.82 0.26 -0.21 16 5 S -0.29 -3.01 23.27 -107.50 -2.50 -5.51 16 6 C -0.08 -0.79 7.11 37.82 0.27 -0.52 16 7 C 0.14 1.48 3.03 -67.61 -0.21 1.28 16 8 H 0.11 1.24 7.27 -51.93 -0.38 0.87 16 9 N -0.70 -8.80 3.85 -53.95 -0.21 -9.01 16 10 C 0.51 8.09 7.88 -11.62 -0.09 8.00 16 11 O -0.53 -8.98 15.98 5.49 0.09 -8.89 16 12 C 0.47 9.16 7.84 -11.62 -0.09 9.07 16 13 O -0.39 -8.75 12.24 5.49 0.07 -8.68 16 14 N -0.64 -12.81 5.37 -11.83 -0.06 -12.87 16 15 C 0.37 8.77 7.42 -155.09 -1.15 7.62 16 16 C -0.35 -7.68 9.96 -38.88 -0.39 -8.07 16 17 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 18 C -0.30 -7.30 9.83 -38.65 -0.38 -7.68 16 19 C 0.27 7.34 6.55 -85.00 -0.56 6.78 16 20 C -0.42 -11.17 9.14 -37.73 -0.34 -11.51 16 21 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 22 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 23 N -0.66 -17.12 8.99 55.55 0.50 -16.62 16 24 Si 0.90 18.29 29.56 -169.99 -5.02 13.27 16 25 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 28 N -0.47 -12.79 5.74 -10.28 -0.06 -12.85 16 29 H 0.07 0.72 7.33 -51.93 -0.38 0.34 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.54 7.00 -51.93 -0.36 0.18 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.68 7.82 -51.93 -0.41 0.27 16 34 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.04 8.05 -51.93 -0.42 0.62 16 36 H 0.42 5.14 5.57 -40.82 -0.23 4.91 16 37 H 0.41 7.06 8.18 -40.82 -0.33 6.73 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 40 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 41 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -30.52 352.57 -10.08 -40.60 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.01 Total: 12.42 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -3.17 Total: 2.83 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.17 Total: -51.35 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.16 Total: -17.57 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -2.50 Total: -5.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.52 -10.08 -40.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890279808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.829 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds