Wall clock time and date at job start Tue Mar 31 2020 19:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.99303 * 2 1 4 4 C 1.55159 * 111.13315 * 124.21246 * 2 1 3 5 5 C 1.52941 * 108.96082 * 159.34977 * 4 2 1 6 6 H 1.09001 * 108.88240 * 90.69471 * 5 4 2 7 7 N 1.46495 * 108.88379 * 209.24547 * 5 4 2 8 8 C 1.34783 * 119.99980 * 205.00043 * 7 5 4 9 9 O 1.21357 * 119.99890 * 0.02562 * 8 7 5 10 10 C 1.49363 * 120.00048 * 180.02562 * 8 7 5 11 11 O 1.21357 * 120.00062 * 359.97438 * 10 8 7 12 12 N 1.34783 * 120.00048 * 179.97438 * 10 8 7 13 13 C 1.39108 * 120.00033 * 174.39532 * 12 10 8 14 14 C 1.39715 * 119.57888 * 341.03213 * 13 12 10 15 15 C 1.38647 * 119.49032 * 179.72706 * 14 13 12 16 16 C 1.38353 * 118.67478 * 0.53571 * 15 14 13 17 17 C 1.40594 * 119.13249 * 359.73178 * 16 15 14 18 18 C 1.41336 * 119.78508 * 180.02562 * 17 16 15 19 19 H 1.08010 * 119.99906 * 6.34348 * 18 17 16 20 20 C 1.40029 * 120.00013 * 186.33702 * 18 17 16 21 21 N 1.30736 * 120.00102 * 353.65202 * 20 18 17 22 22 Si 1.86800 * 119.99821 * 173.65800 * 20 18 17 23 23 H 1.48500 * 109.47380 * 94.98514 * 22 20 18 24 24 H 1.48503 * 109.46863 * 214.98757 * 22 20 18 25 25 H 1.48507 * 109.47072 * 334.98322 * 22 20 18 26 26 N 1.31932 * 119.57868 * 161.30576 * 13 12 10 27 27 C 1.53703 * 112.49042 * 329.90048 * 5 4 2 28 28 S 1.83455 * 104.98695 * 2.86498 * 27 5 4 29 29 H 1.08998 * 109.46627 * 299.30201 * 1 2 3 30 30 H 1.09002 * 109.46601 * 179.30051 * 1 2 3 31 31 H 1.08997 * 109.46771 * 59.29783 * 1 2 3 32 32 H 1.08997 * 109.59888 * 279.28094 * 4 2 1 33 33 H 1.09001 * 109.60055 * 39.60219 * 4 2 1 34 34 H 0.97001 * 120.00419 * 25.00478 * 7 5 4 35 35 H 0.96994 * 119.99802 * 354.39712 * 12 10 8 36 36 H 1.08002 * 120.25297 * 0.02562 * 14 13 12 37 37 H 1.08004 * 120.66435 * 180.24756 * 15 14 13 38 38 H 1.07999 * 120.43350 * 179.75108 * 16 15 14 39 39 H 0.97001 * 120.00292 * 179.97438 * 21 20 18 40 40 H 1.08997 * 110.34038 * 121.69818 * 27 5 4 41 41 H 1.08995 * 110.34015 * 243.84522 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 6 2.0894 -0.8137 1.1968 5 6 3.5310 -1.2218 0.8898 6 1 4.2035 -0.4500 1.2642 7 7 3.8246 -2.4805 1.5793 8 6 5.0964 -2.7947 1.8961 9 8 5.9983 -2.0346 1.6106 10 6 5.3958 -4.0783 2.5986 11 8 4.4939 -4.8382 2.8846 12 7 6.6677 -4.3927 2.9150 13 6 6.9358 -5.5294 3.6708 14 6 5.9149 -6.1123 4.4256 15 6 6.1827 -7.2485 5.1737 16 6 7.4654 -7.7667 5.1578 17 6 8.4509 -7.1309 4.3824 18 6 9.7657 -7.6489 4.3557 19 1 9.9871 -8.5857 4.8454 20 6 10.7812 -6.9476 3.6941 21 7 10.4913 -5.8801 2.9971 22 14 12.5500 -7.5373 3.8072 23 1 12.8628 -8.3923 2.6341 24 1 13.4623 -6.3656 3.8232 25 1 12.7311 -8.3227 5.0546 26 7 8.1523 -6.0400 3.6699 27 6 3.7805 -1.4120 -0.6149 28 16 2.1934 -0.9650 -1.4192 29 1 -0.3632 0.5030 0.8962 30 1 -0.3632 -1.0276 -0.0125 31 1 -0.3633 0.5247 -0.8836 32 1 2.0668 -0.2010 2.0980 33 1 1.4833 -1.7072 1.3467 34 1 3.1037 -3.0880 1.8078 35 1 7.3960 -3.8264 2.6157 36 1 4.9234 -5.6840 4.4226 37 1 5.4067 -7.7170 5.7610 38 1 7.7065 -8.6483 5.7332 39 1 11.1948 -5.3941 2.5391 40 1 4.5762 -0.7487 -0.9539 41 1 4.0366 -2.4497 -0.8283 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890326981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:04 Heat of formation + Delta-G solvation = -41.341967 kcal Electronic energy + Delta-G solvation = -25543.608578 eV Core-core repulsion = 21742.281898 eV Total energy + Delta-G solvation = -3801.326680 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18821 -40.66112 -39.38915 -38.08659 -36.27803 -35.21645 -34.71902 -32.40186 -31.89177 -31.23586 -27.98062 -27.72922 -26.51904 -24.14213 -23.57276 -22.77002 -21.82850 -21.38848 -19.93630 -19.38044 -18.27944 -17.98971 -17.44917 -17.43446 -16.87642 -16.55560 -16.47379 -16.20806 -15.62143 -15.42971 -15.18704 -14.94641 -14.71118 -14.42669 -14.18603 -13.86497 -13.81800 -13.47761 -13.27663 -13.13227 -12.96120 -12.75933 -12.63470 -12.47410 -12.28702 -12.16871 -11.89804 -11.87108 -11.69628 -11.09139 -11.06294 -10.62601 -10.47193 -10.04524 -9.69926 -9.11172 -8.79073 -8.34642 -6.54120 -0.01839 0.70031 0.89539 1.08482 1.12282 1.30714 1.42065 1.52466 1.57671 2.01618 2.22752 2.43896 2.83745 3.21089 3.36526 3.55097 3.82349 3.85562 3.86121 4.07493 4.26206 4.28866 4.41357 4.51726 4.61552 4.71418 4.80564 4.82326 4.84349 4.86838 4.91274 4.97536 5.10911 5.19810 5.29610 5.48961 5.54530 5.76169 5.87971 6.03686 6.17954 6.31234 6.58189 6.71568 6.77700 6.94948 8.03239 8.41678 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.002317 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.583636 B =12081.576506 C =13002.582792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.022 4.022 3 H 0.115 0.885 4 C -0.125 4.125 5 C 0.141 3.859 6 H 0.103 0.897 7 N -0.677 5.677 8 C 0.526 3.474 9 O -0.530 6.530 10 C 0.506 3.494 11 O -0.512 6.512 12 N -0.618 5.618 13 C 0.338 3.662 14 C -0.319 4.319 15 C -0.046 4.046 16 C -0.299 4.299 17 C 0.242 3.758 18 C -0.463 4.463 19 H 0.095 0.905 20 C 0.024 3.976 21 N -0.755 5.755 22 Si 0.989 3.011 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.253 1.253 26 N -0.533 5.533 27 C -0.076 4.076 28 S -0.333 6.333 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.097 0.903 34 H 0.423 0.577 35 H 0.419 0.581 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.099 0.901 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.806 13.036 -4.124 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.150 4.150 3 H 0.133 0.867 4 C -0.164 4.164 5 C 0.036 3.964 6 H 0.121 0.879 7 N -0.332 5.332 8 C 0.305 3.695 9 O -0.406 6.406 10 C 0.288 3.712 11 O -0.387 6.387 12 N -0.263 5.263 13 C 0.104 3.896 14 C -0.343 4.343 15 C -0.070 4.070 16 C -0.321 4.321 17 C 0.116 3.884 18 C -0.494 4.494 19 H 0.113 0.887 20 C -0.198 4.198 21 N -0.377 5.377 22 Si 0.809 3.191 23 H -0.189 1.189 24 H -0.194 1.194 25 H -0.177 1.177 26 N -0.253 5.253 27 C -0.226 4.226 28 S -0.107 6.107 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.262 0.738 35 H 0.257 0.743 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.547 13.388 -5.865 21.338 hybrid contribution 0.976 -0.563 1.227 1.666 sum -14.571 12.825 -4.639 19.957 Atomic orbital electron populations 1.21651 0.90019 1.03494 1.03785 1.24161 1.00308 1.00437 0.90110 0.86729 1.22728 0.91864 1.02223 0.99632 1.21790 0.99373 0.85651 0.89581 0.87901 1.45870 1.07206 1.22688 1.57404 1.19600 0.84541 0.85574 0.79747 1.90790 1.45811 1.50712 1.53319 1.20370 0.82673 0.87657 0.80495 1.90656 1.45460 1.50540 1.52051 1.42916 1.09000 1.24431 1.49968 1.18796 0.92106 0.87902 0.90838 1.21810 1.00812 1.03618 1.08081 1.21218 0.95901 0.94200 0.95671 1.21962 0.94945 1.05717 1.09492 1.18722 0.94146 0.87400 0.88108 1.19982 0.92061 1.07306 1.30068 0.88670 1.27006 1.05709 0.94268 0.92799 1.70191 1.35676 1.13115 1.18712 0.85099 0.75284 0.78788 0.79960 1.18909 1.19424 1.17673 1.68025 1.16921 1.15140 1.25178 1.24394 0.96712 1.05536 0.95917 1.88213 1.22410 1.69743 1.30351 0.88683 0.91685 0.91728 0.86473 0.88495 0.73822 0.74303 0.84113 0.84372 0.86422 0.90999 0.88266 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.41 71.98 0.68 -0.30 16 2 C -0.02 -0.22 3.94 31.33 0.12 -0.10 16 3 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.13 -1.20 5.44 31.31 0.17 -1.03 16 5 C 0.14 2.24 2.93 45.21 0.13 2.37 16 6 H 0.10 1.72 7.59 -2.39 -0.02 1.70 16 7 N -0.68 -13.58 4.89 -442.92 -2.17 -15.75 16 8 C 0.53 15.01 7.80 87.24 0.68 15.69 16 9 O -0.53 -17.21 16.15 -3.27 -0.05 -17.26 16 10 C 0.51 18.07 7.73 87.24 0.67 18.74 16 11 O -0.51 -19.21 13.28 -3.27 -0.04 -19.25 16 12 N -0.62 -26.02 5.39 -309.70 -1.67 -27.69 16 13 C 0.34 16.86 7.50 133.31 1.00 17.86 16 14 C -0.32 -14.86 8.83 22.72 0.20 -14.66 16 15 C -0.05 -2.04 10.15 22.39 0.23 -1.81 16 16 C -0.30 -14.63 9.83 22.87 0.22 -14.40 16 17 C 0.24 13.45 6.54 40.20 0.26 13.72 16 18 C -0.46 -24.78 9.13 23.47 0.21 -24.56 16 19 H 0.10 4.71 7.86 -2.91 -0.02 4.69 16 20 C 0.02 1.21 5.49 85.29 0.47 1.68 16 21 N -0.75 -40.23 11.49 21.84 0.25 -39.98 16 22 Si 0.99 37.67 29.56 68.60 2.03 39.69 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 26 N -0.53 -29.76 7.92 -186.43 -1.48 -31.24 16 27 C -0.08 -1.42 7.05 72.22 0.51 -0.91 16 28 S -0.33 -5.99 22.72 -56.49 -1.28 -7.27 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.12 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.87 7.60 -2.39 -0.02 0.85 16 34 H 0.42 7.42 7.75 -92.71 -0.72 6.70 16 35 H 0.42 17.43 8.31 -92.71 -0.77 16.66 16 36 H 0.14 6.17 5.34 -3.14 -0.02 6.16 16 37 H 0.14 5.02 8.06 -2.91 -0.02 4.99 16 38 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 39 H 0.28 13.47 8.29 -92.71 -0.77 12.70 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.09 1.99 7.88 -2.39 -0.02 1.97 16 Total: -1.00 -67.60 360.08 0.76 -66.84 By element: Atomic # 1 Polarization: 40.00 SS G_CDS: -0.39 Total: 39.60 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.57 Total: 12.30 kcal Atomic # 7 Polarization: -109.59 SS G_CDS: -5.06 Total: -114.66 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.10 Total: -36.51 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.69 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -1.28 Total: -7.27 kcal Total: -67.60 0.76 -66.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890326981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.503 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds