Wall clock time and date at job start Tue Mar 31 2020 19:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.76173 * 2 1 4 4 C 1.55135 * 110.85865 * 236.27580 * 2 1 3 5 5 C 1.53860 * 106.89856 * 199.70482 * 4 2 1 6 6 H 1.08995 * 109.46577 * 287.42612 * 5 4 2 7 7 N 1.46500 * 109.60612 * 167.17717 * 5 4 2 8 8 C 1.34777 * 120.00134 * 154.04980 * 7 5 4 9 9 O 1.21365 * 119.99690 * 359.97438 * 8 7 5 10 10 C 1.49358 * 120.00405 * 179.97438 * 8 7 5 11 11 O 1.21356 * 120.00092 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00388 * 179.97438 * 10 8 7 13 13 C 1.39109 * 120.00489 * 185.14845 * 12 10 8 14 14 C 1.39708 * 119.58198 * 174.67651 * 13 12 10 15 15 C 1.38654 * 119.49530 * 180.02562 * 14 13 12 16 16 C 1.38345 * 118.66955 * 0.02562 * 15 14 13 17 17 C 1.40597 * 119.14075 * 359.97438 * 16 15 14 18 18 C 1.41334 * 119.78759 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00204 * 359.97438 * 18 17 16 20 20 C 1.40030 * 119.99395 * 179.72693 * 18 17 16 21 21 N 1.30736 * 120.00537 * 0.27007 * 20 18 17 22 22 Si 1.86808 * 119.99617 * 180.27161 * 20 18 17 23 23 H 1.48505 * 109.46704 * 89.99835 * 22 20 18 24 24 H 1.48491 * 109.47106 * 209.99905 * 22 20 18 25 25 H 1.48497 * 109.47039 * 330.00225 * 22 20 18 26 26 N 1.31944 * 119.57539 * 354.97916 * 13 12 10 27 27 C 1.54268 * 108.92730 * 47.25792 * 5 4 2 28 28 S 1.83107 * 104.64980 * 332.04566 * 27 5 4 29 29 H 1.09005 * 109.47192 * 297.95959 * 1 2 3 30 30 H 1.09004 * 109.47270 * 57.95765 * 1 2 3 31 31 H 1.08998 * 109.47190 * 177.95944 * 1 2 3 32 32 H 1.09004 * 109.97258 * 80.34547 * 4 2 1 33 33 H 1.08995 * 109.97767 * 319.06900 * 4 2 1 34 34 H 0.96995 * 120.00037 * 334.04423 * 7 5 4 35 35 H 0.97002 * 119.99673 * 5.14914 * 12 10 8 36 36 H 1.07998 * 120.25017 * 0.05557 * 14 13 12 37 37 H 1.07999 * 120.66446 * 179.97438 * 15 14 13 38 38 H 1.08003 * 120.43103 * 180.02562 * 16 15 14 39 39 H 0.97001 * 120.00218 * 180.02562 * 21 20 18 40 40 H 1.09005 * 110.40494 * 90.83459 * 27 5 4 41 41 H 1.09003 * 110.40769 * 213.13788 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9163 1.0192 0.0000 4 6 2.0823 -0.8049 -1.2057 5 6 3.5367 -1.1758 -0.8673 6 1 4.1628 -0.2859 -0.9314 7 7 4.0192 -2.1856 -1.8126 8 6 5.3377 -2.2910 -2.0714 9 8 6.1252 -1.5490 -1.5216 10 6 5.8297 -3.3209 -3.0347 11 8 5.0424 -4.0632 -3.5841 12 7 7.1481 -3.4260 -3.2939 13 6 7.5971 -4.3107 -4.2691 14 6 8.9519 -4.3328 -4.6092 15 6 9.3973 -5.2149 -5.5817 16 6 8.4786 -6.0516 -6.1898 17 6 7.1285 -5.9817 -5.8037 18 6 6.1784 -6.8306 -6.4156 19 1 6.4902 -7.5297 -7.1773 20 6 4.8335 -6.7686 -6.0303 21 7 4.4559 -5.9219 -5.1085 22 14 3.5790 -7.8958 -6.8335 23 1 3.4843 -9.1608 -6.0614 24 1 2.2533 -7.2271 -6.8527 25 1 4.0023 -8.1957 -8.2250 26 7 6.7368 -5.1141 -4.8652 27 6 3.5879 -1.7425 0.5666 28 16 2.1831 -0.9460 1.4298 29 1 -0.3634 0.4818 0.9077 30 1 -0.3634 0.5452 -0.8711 31 1 -0.3633 -1.0270 -0.0366 32 1 2.0543 -0.1920 -2.1067 33 1 1.4917 -1.7092 -1.3517 34 1 3.3898 -2.7784 -2.2522 35 1 7.7841 -2.8846 -2.8004 36 1 9.6471 -3.6681 -4.1179 37 1 10.4404 -5.2476 -5.8596 38 1 8.7945 -6.7501 -6.9506 39 1 3.5244 -5.8793 -4.8413 40 1 3.4605 -2.8250 0.5522 41 1 4.5302 -1.4780 1.0465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890326982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:08 Heat of formation + Delta-G solvation = -31.501025 kcal Electronic energy + Delta-G solvation = -26112.470772 eV Core-core repulsion = 22311.570828 eV Total energy + Delta-G solvation = -3800.899945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.81407 -40.43356 -39.06273 -37.99610 -36.15445 -35.08057 -34.60185 -32.27499 -31.82444 -31.06032 -27.82809 -27.66846 -26.37409 -24.06186 -23.32173 -22.58718 -22.01999 -21.09891 -19.99481 -18.91252 -18.24274 -17.75023 -17.53064 -17.01776 -16.51877 -16.45541 -16.29061 -16.03502 -15.58457 -15.11883 -15.07333 -14.89319 -14.67865 -14.55904 -13.99080 -13.81240 -13.76837 -13.41124 -13.01017 -12.88400 -12.74515 -12.70770 -12.57059 -12.40157 -12.30196 -12.24520 -12.00408 -11.76356 -11.60606 -11.14612 -10.92021 -10.64464 -10.38896 -9.93696 -9.21090 -8.92709 -8.78352 -8.09134 -6.42619 0.32352 0.64714 1.00879 1.18700 1.27507 1.43544 1.45321 1.53893 1.56747 2.27964 2.34257 2.61447 2.97907 3.37300 3.44790 3.52311 3.72390 3.88511 4.01169 4.02702 4.30017 4.32453 4.42691 4.56077 4.66787 4.76043 4.79311 4.81458 4.87516 4.94158 4.97643 4.98670 5.10105 5.26587 5.27715 5.62532 5.70065 5.88875 5.94232 6.13269 6.28074 6.52299 6.68068 6.80580 7.03808 7.27245 8.24290 8.55319 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013544 B = 0.003122 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.906098 B = 8965.480521 C =10701.006402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.027 4.027 3 H 0.114 0.886 4 C -0.129 4.129 5 C 0.142 3.858 6 H 0.101 0.899 7 N -0.682 5.682 8 C 0.524 3.476 9 O -0.539 6.539 10 C 0.461 3.539 11 O -0.418 6.418 12 N -0.632 5.632 13 C 0.347 3.653 14 C -0.343 4.343 15 C -0.033 4.033 16 C -0.322 4.322 17 C 0.236 3.764 18 C -0.461 4.461 19 H 0.087 0.913 20 C 0.016 3.984 21 N -0.694 5.694 22 Si 0.975 3.025 23 H -0.268 1.268 24 H -0.270 1.270 25 H -0.259 1.259 26 N -0.505 5.505 27 C -0.080 4.080 28 S -0.316 6.316 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.420 0.580 35 H 0.424 0.576 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.274 0.726 40 H 0.093 0.907 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 11.370 8.537 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 H 0.132 0.868 4 C -0.168 4.168 5 C 0.036 3.964 6 H 0.119 0.881 7 N -0.336 5.336 8 C 0.305 3.695 9 O -0.416 6.416 10 C 0.238 3.762 11 O -0.283 6.283 12 N -0.282 5.282 13 C 0.109 3.891 14 C -0.368 4.368 15 C -0.057 4.057 16 C -0.345 4.345 17 C 0.111 3.889 18 C -0.491 4.491 19 H 0.105 0.895 20 C -0.210 4.210 21 N -0.313 5.313 22 Si 0.797 3.203 23 H -0.193 1.193 24 H -0.194 1.194 25 H -0.183 1.183 26 N -0.225 5.225 27 C -0.230 4.230 28 S -0.091 6.091 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.113 0.887 34 H 0.258 0.742 35 H 0.263 0.737 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.553 11.423 10.035 17.956 hybrid contribution 1.215 -0.609 -1.463 1.997 sum -8.338 10.814 8.572 16.122 Atomic orbital electron populations 1.21710 0.90203 1.03506 1.03538 1.24015 1.00313 1.00578 0.90654 0.86771 1.22889 0.92201 1.02238 0.99462 1.22006 0.97301 0.91244 0.85843 0.88093 1.45700 1.06609 1.37080 1.44177 1.20146 0.83863 0.83677 0.81860 1.90711 1.55474 1.43952 1.51503 1.20686 0.84285 0.86206 0.84977 1.91217 1.53735 1.38376 1.44938 1.42973 1.07800 1.40379 1.37074 1.18993 0.90159 0.90364 0.89594 1.20960 0.93967 1.11377 1.10517 1.21042 0.98916 0.92616 0.93160 1.21850 0.94856 1.08486 1.09309 1.18860 0.91360 0.89983 0.88708 1.19914 0.92845 1.17491 1.18887 0.89531 1.26960 1.01017 0.97359 0.95659 1.70441 1.17372 1.24931 1.18547 0.85316 0.77179 0.78386 0.79466 1.19277 1.19443 1.18301 1.68603 1.33606 1.08033 1.12226 1.24376 0.98841 1.03215 0.96529 1.87823 1.37079 1.60664 1.23519 0.91613 0.89124 0.91684 0.86985 0.88741 0.74170 0.73742 0.85284 0.84363 0.87414 0.91472 0.88859 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.38 71.98 0.68 -0.66 16 2 C -0.03 -0.35 3.84 31.32 0.12 -0.23 16 3 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.13 -1.75 5.40 31.62 0.17 -1.58 16 5 C 0.14 2.73 2.89 45.71 0.13 2.86 16 6 H 0.10 2.08 7.55 -2.39 -0.02 2.07 16 7 N -0.68 -16.63 5.04 -440.54 -2.22 -18.85 16 8 C 0.52 16.51 7.87 87.24 0.69 17.19 16 9 O -0.54 -17.84 16.13 -3.29 -0.05 -17.89 16 10 C 0.46 18.35 7.84 87.24 0.68 19.04 16 11 O -0.42 -19.60 12.24 -3.26 -0.04 -19.64 16 12 N -0.63 -25.42 5.37 -309.71 -1.66 -27.08 16 13 C 0.35 16.65 7.43 133.30 0.99 17.64 16 14 C -0.34 -14.64 9.96 22.72 0.23 -14.42 16 15 C -0.03 -1.42 10.15 22.39 0.23 -1.19 16 16 C -0.32 -15.81 9.83 22.87 0.22 -15.58 16 17 C 0.24 13.19 6.55 40.20 0.26 13.46 16 18 C -0.46 -25.14 9.14 23.47 0.21 -24.93 16 19 H 0.09 4.44 7.85 -2.91 -0.02 4.41 16 20 C 0.02 0.80 5.50 85.29 0.47 1.27 16 21 N -0.69 -37.05 8.99 21.84 0.20 -36.86 16 22 Si 0.98 38.35 29.56 68.60 2.03 40.38 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 25 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 26 N -0.50 -27.99 5.73 -186.42 -1.07 -29.06 16 27 C -0.08 -1.66 6.99 72.41 0.51 -1.15 16 28 S -0.32 -6.20 22.73 -56.49 -1.28 -7.49 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.74 8.12 -2.39 -0.02 0.72 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 33 H 0.09 1.26 8.03 -2.39 -0.02 1.24 16 34 H 0.42 9.98 8.07 -92.71 -0.75 9.23 16 35 H 0.42 14.25 8.18 -92.71 -0.76 13.49 16 36 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 38 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.27 13.47 8.29 -92.71 -0.77 12.70 16 40 H 0.09 2.04 8.08 -2.38 -0.02 2.02 16 41 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -68.26 358.91 1.07 -67.19 By element: Atomic # 1 Polarization: 37.99 SS G_CDS: -0.42 Total: 37.57 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 5.59 Total: 11.72 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.75 Total: -111.85 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.09 Total: -37.54 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Atomic # 16 Polarization: -6.20 SS G_CDS: -1.28 Total: -7.49 kcal Total: -68.26 1.07 -67.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890326982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.693 kcal (2) G-P(sol) polarization free energy of solvation -68.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds