Wall clock time and date at job start Tue Mar 31 2020 19:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.98969 * 2 1 4 4 C 1.54993 * 111.11103 * 124.37293 * 2 1 3 5 5 C 1.52942 * 109.04292 * 159.46687 * 4 2 1 6 6 H 1.08999 * 108.88907 * 208.99530 * 5 4 2 7 7 N 1.46498 * 108.88962 * 90.44333 * 5 4 2 8 8 C 1.34776 * 120.00130 * 152.88248 * 7 5 4 9 9 O 1.21361 * 119.99794 * 359.97438 * 8 7 5 10 10 C 1.49364 * 120.00034 * 180.02562 * 8 7 5 11 11 O 1.21361 * 120.00172 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00034 * 179.97438 * 10 8 7 13 13 C 1.39110 * 120.00098 * 174.84577 * 12 10 8 14 14 C 1.39711 * 119.57976 * 185.30755 * 13 12 10 15 15 C 1.38648 * 119.49715 * 179.97438 * 14 13 12 16 16 C 1.38352 * 118.66970 * 0.02562 * 15 14 13 17 17 C 1.40598 * 119.13301 * 359.97438 * 16 15 14 18 18 C 1.41334 * 119.78249 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00415 * 0.02562 * 18 17 16 20 20 C 1.40028 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.30736 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46732 * 90.00037 * 22 20 18 24 24 H 1.48504 * 109.47129 * 210.00023 * 22 20 18 25 25 H 1.48498 * 109.47248 * 330.00289 * 22 20 18 26 26 N 1.31940 * 119.57917 * 5.03698 * 13 12 10 27 27 C 1.53708 * 112.37765 * 329.71528 * 5 4 2 28 28 S 1.83394 * 104.96895 * 2.89942 * 27 5 4 29 29 H 1.08998 * 109.46770 * 182.76713 * 1 2 3 30 30 H 1.09000 * 109.46749 * 302.76429 * 1 2 3 31 31 H 1.08999 * 109.47182 * 62.76193 * 1 2 3 32 32 H 1.08998 * 109.65408 * 39.45635 * 4 2 1 33 33 H 1.09002 * 109.47448 * 279.36500 * 4 2 1 34 34 H 0.96993 * 119.99624 * 332.87039 * 7 5 4 35 35 H 0.97000 * 120.00188 * 354.83887 * 12 10 8 36 36 H 1.08000 * 120.25183 * 359.97438 * 14 13 12 37 37 H 1.07996 * 120.67117 * 179.97438 * 15 14 13 38 38 H 1.08000 * 120.43004 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00212 * 180.02562 * 21 20 18 40 40 H 1.08998 * 110.33896 * 121.77130 * 27 5 4 41 41 H 1.09003 * 110.34054 * 243.91660 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 6 2.0883 -0.8163 1.1934 5 6 3.5310 -1.2224 0.8889 6 1 3.7503 -2.1580 1.4032 7 7 4.4325 -0.1831 1.3922 8 6 5.6924 -0.4999 1.7511 9 8 6.0799 -1.6462 1.6578 10 6 6.6114 0.5597 2.2648 11 8 6.2237 1.7059 2.3586 12 7 7.8711 0.2428 2.6243 13 6 8.7599 1.2446 3.0006 14 6 10.0931 0.9205 3.2639 15 6 10.9776 1.9204 3.6383 16 6 10.5081 3.2178 3.7407 17 6 9.1551 3.4800 3.4625 18 6 8.6610 4.8004 3.5623 19 1 9.3221 5.6041 3.8510 20 6 7.3141 5.0666 3.2868 21 7 6.5136 4.0937 2.9377 22 14 6.6609 6.8117 3.4193 23 1 6.8067 7.4956 2.1093 24 1 5.2264 6.7756 3.8019 25 1 7.4302 7.5512 4.4521 26 7 8.3343 2.4896 3.0991 27 6 3.7805 -1.4115 -0.6160 28 16 2.1933 -0.9650 -1.4190 29 1 -0.3633 -1.0265 0.0496 30 1 -0.3633 0.5562 0.8642 31 1 -0.3633 0.4703 -0.9137 32 1 1.4810 -1.7090 1.3430 33 1 2.0632 -0.2048 2.0954 34 1 4.1227 0.7330 1.4669 35 1 8.1580 -0.6838 2.6206 36 1 10.4322 -0.1012 3.1764 37 1 12.0122 1.6911 3.8467 38 1 11.1722 4.0186 4.0305 39 1 5.5807 4.2782 2.7465 40 1 4.5762 -0.7479 -0.9544 41 1 4.0367 -2.4491 -0.8301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890326984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:14 Heat of formation + Delta-G solvation = -10.449144 kcal Electronic energy + Delta-G solvation = -26290.523368 eV Core-core repulsion = 22490.536302 eV Total energy + Delta-G solvation = -3799.987066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43638 -38.90291 -37.48675 -36.91962 -34.49262 -33.69419 -33.06273 -30.92847 -30.41651 -29.24776 -27.21409 -25.88117 -24.88724 -23.16438 -21.84064 -21.25663 -20.49325 -19.74395 -18.39673 -17.30603 -17.06802 -16.52849 -16.09664 -15.69727 -15.14804 -14.98352 -14.75095 -14.62272 -14.51412 -13.96849 -13.76369 -13.55021 -13.39669 -12.97127 -12.91571 -12.55233 -12.31463 -12.08058 -12.03193 -11.99573 -11.55711 -11.23511 -11.18593 -11.08787 -11.02772 -10.72614 -10.55766 -10.30022 -10.01433 -9.84985 -9.31641 -9.13791 -9.07814 -8.07408 -7.94205 -7.38139 -7.10540 -6.26254 -4.48962 1.54222 1.78536 2.05521 2.64381 2.77782 3.04178 3.10804 3.13457 3.20466 3.86138 3.96070 3.98750 4.08937 4.26025 4.55697 4.68451 4.82467 4.83642 4.89470 4.96602 5.15063 5.29506 5.41922 5.49977 5.55444 5.63544 5.76760 5.92862 6.02925 6.18662 6.39103 6.53066 6.70632 6.76133 7.10364 7.15129 7.42887 7.48445 7.72595 7.81312 7.97101 8.09915 8.32277 8.57616 8.88033 8.97056 10.10050 10.37237 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.003445 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.042607 B = 8125.189914 C =10008.845560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 H 0.101 0.899 4 C -0.131 4.131 5 C 0.140 3.860 6 H 0.107 0.893 7 N -0.704 5.704 8 C 0.511 3.489 9 O -0.530 6.530 10 C 0.466 3.534 11 O -0.385 6.385 12 N -0.638 5.638 13 C 0.368 3.632 14 C -0.348 4.348 15 C -0.036 4.036 16 C -0.300 4.300 17 C 0.271 3.729 18 C -0.423 4.423 19 H 0.084 0.916 20 C 0.060 3.940 21 N -0.663 5.663 22 Si 0.898 3.102 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.263 1.263 26 N -0.475 5.475 27 C -0.077 4.077 28 S -0.294 6.294 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.415 0.585 35 H 0.411 0.589 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.097 0.903 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.392 -8.669 -3.904 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 H 0.119 0.881 4 C -0.171 4.171 5 C 0.034 3.966 6 H 0.125 0.875 7 N -0.359 5.359 8 C 0.292 3.708 9 O -0.406 6.406 10 C 0.242 3.758 11 O -0.248 6.248 12 N -0.286 5.286 13 C 0.130 3.870 14 C -0.374 4.374 15 C -0.060 4.060 16 C -0.323 4.323 17 C 0.146 3.854 18 C -0.454 4.454 19 H 0.102 0.898 20 C -0.169 4.169 21 N -0.282 5.282 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.187 1.187 26 N -0.194 5.194 27 C -0.227 4.227 28 S -0.069 6.069 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.252 0.748 35 H 0.247 0.753 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.024 -8.719 -5.274 16.536 hybrid contribution 1.224 0.639 1.229 1.849 sum -11.800 -8.080 -4.044 14.862 Atomic orbital electron populations 1.21616 0.91377 1.03196 1.02812 1.24119 0.99459 1.00790 0.92581 0.88073 1.22749 0.93879 1.01595 0.98846 1.21559 0.88935 0.93345 0.92807 0.87529 1.46028 1.11820 1.13142 1.64931 1.20923 0.83034 0.89202 0.77604 1.90703 1.75505 1.21099 1.53301 1.20076 0.83705 0.89191 0.82808 1.91220 1.72550 1.17223 1.43796 1.42982 1.10404 1.10091 1.65157 1.18538 0.85837 0.89008 0.93665 1.20513 0.93483 0.98831 1.24586 1.20589 0.96931 0.92948 0.95543 1.21659 0.97768 0.95889 1.16991 1.18362 0.87063 0.92166 0.87809 1.19596 0.94538 0.92619 1.38641 0.89819 1.26157 0.97501 0.98292 0.94909 1.70302 1.04496 1.30765 1.22679 0.86484 0.78570 0.83258 0.79461 1.19599 1.20289 1.18694 1.68637 1.34656 0.96019 1.20074 1.24484 0.96801 1.05986 0.95409 1.87899 1.21925 1.68668 1.28364 0.91366 0.90928 0.91662 0.88601 0.88750 0.74823 0.75306 0.88713 0.88332 0.88346 0.91714 0.88413 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 9.42 37.16 0.35 -0.53 16 2 C -0.04 -0.34 3.94 -25.68 -0.10 -0.44 16 3 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.13 -1.02 5.31 -25.71 -0.14 -1.16 16 5 C 0.14 1.42 2.96 -67.59 -0.20 1.22 16 6 H 0.11 1.13 7.52 -51.93 -0.39 0.73 16 7 N -0.70 -8.85 4.80 -53.94 -0.26 -9.10 16 8 C 0.51 8.14 7.83 -11.63 -0.09 8.05 16 9 O -0.53 -8.93 16.12 5.49 0.09 -8.84 16 10 C 0.47 9.21 7.84 -11.63 -0.09 9.12 16 11 O -0.39 -8.82 12.24 5.49 0.07 -8.76 16 12 N -0.64 -12.87 5.37 -11.83 -0.06 -12.94 16 13 C 0.37 8.82 7.43 -155.09 -1.15 7.67 16 14 C -0.35 -7.72 9.95 -38.88 -0.39 -8.11 16 15 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 16 C -0.30 -7.34 9.83 -38.65 -0.38 -7.72 16 17 C 0.27 7.38 6.55 -85.00 -0.56 6.82 16 18 C -0.42 -11.23 9.14 -37.73 -0.34 -11.57 16 19 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 20 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 21 N -0.66 -17.27 8.99 55.55 0.50 -16.77 16 22 Si 0.90 18.42 29.56 -169.99 -5.02 13.39 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 N -0.47 -12.87 5.73 -10.28 -0.06 -12.93 16 27 C -0.08 -0.83 7.09 37.53 0.27 -0.56 16 28 S -0.29 -3.14 22.71 -107.50 -2.44 -5.58 16 29 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.64 8.01 -51.93 -0.42 0.22 16 33 H 0.09 0.69 8.00 -51.93 -0.42 0.28 16 34 H 0.41 5.11 8.06 -40.82 -0.33 4.78 16 35 H 0.41 7.08 8.18 -40.82 -0.33 6.75 16 36 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.10 1.85 8.06 -52.49 -0.42 1.42 16 38 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.27 6.50 8.29 -40.82 -0.34 6.17 16 40 H 0.10 1.19 7.88 -51.93 -0.41 0.78 16 41 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -30.91 358.40 -10.33 -41.24 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -5.22 Total: 11.89 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -3.32 Total: 3.00 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.12 Total: -51.74 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.16 Total: -17.60 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.02 Total: 13.39 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.44 Total: -5.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.91 -10.33 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890326984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.795 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds