Wall clock time and date at job start Tue Mar 31 2020 19:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.98969 * 2 1 4 4 C 1.54993 * 111.11103 * 124.37293 * 2 1 3 5 5 C 1.52942 * 109.04292 * 159.46687 * 4 2 1 6 6 H 1.08999 * 108.88907 * 208.99530 * 5 4 2 7 7 N 1.46498 * 108.88962 * 90.44333 * 5 4 2 8 8 C 1.34776 * 120.00130 * 152.88248 * 7 5 4 9 9 O 1.21361 * 119.99794 * 359.97438 * 8 7 5 10 10 C 1.49364 * 120.00034 * 180.02562 * 8 7 5 11 11 O 1.21361 * 120.00172 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00034 * 179.97438 * 10 8 7 13 13 C 1.39110 * 120.00098 * 174.84577 * 12 10 8 14 14 C 1.39711 * 119.57976 * 185.30755 * 13 12 10 15 15 C 1.38648 * 119.49715 * 179.97438 * 14 13 12 16 16 C 1.38352 * 118.66970 * 0.02562 * 15 14 13 17 17 C 1.40598 * 119.13301 * 359.97438 * 16 15 14 18 18 C 1.41334 * 119.78249 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00415 * 0.02562 * 18 17 16 20 20 C 1.40028 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.30736 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00047 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46732 * 90.00037 * 22 20 18 24 24 H 1.48504 * 109.47129 * 210.00023 * 22 20 18 25 25 H 1.48498 * 109.47248 * 330.00289 * 22 20 18 26 26 N 1.31940 * 119.57917 * 5.03698 * 13 12 10 27 27 C 1.53708 * 112.37765 * 329.71528 * 5 4 2 28 28 S 1.83394 * 104.96895 * 2.89942 * 27 5 4 29 29 H 1.08998 * 109.46770 * 182.76713 * 1 2 3 30 30 H 1.09000 * 109.46749 * 302.76429 * 1 2 3 31 31 H 1.08999 * 109.47182 * 62.76193 * 1 2 3 32 32 H 1.08998 * 109.65408 * 39.45635 * 4 2 1 33 33 H 1.09002 * 109.47448 * 279.36500 * 4 2 1 34 34 H 0.96993 * 119.99624 * 332.87039 * 7 5 4 35 35 H 0.97000 * 120.00188 * 354.83887 * 12 10 8 36 36 H 1.08000 * 120.25183 * 359.97438 * 14 13 12 37 37 H 1.07996 * 120.67117 * 179.97438 * 15 14 13 38 38 H 1.08000 * 120.43004 * 179.97438 * 16 15 14 39 39 H 0.97001 * 120.00212 * 180.02562 * 21 20 18 40 40 H 1.08998 * 110.33896 * 121.77130 * 27 5 4 41 41 H 1.09003 * 110.34054 * 243.91660 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9205 1.0177 0.0000 4 6 2.0883 -0.8163 1.1934 5 6 3.5310 -1.2224 0.8889 6 1 3.7503 -2.1580 1.4032 7 7 4.4325 -0.1831 1.3922 8 6 5.6924 -0.4999 1.7511 9 8 6.0799 -1.6462 1.6578 10 6 6.6114 0.5597 2.2648 11 8 6.2237 1.7059 2.3586 12 7 7.8711 0.2428 2.6243 13 6 8.7599 1.2446 3.0006 14 6 10.0931 0.9205 3.2639 15 6 10.9776 1.9204 3.6383 16 6 10.5081 3.2178 3.7407 17 6 9.1551 3.4800 3.4625 18 6 8.6610 4.8004 3.5623 19 1 9.3221 5.6041 3.8510 20 6 7.3141 5.0666 3.2868 21 7 6.5136 4.0937 2.9377 22 14 6.6609 6.8117 3.4193 23 1 6.8067 7.4956 2.1093 24 1 5.2264 6.7756 3.8019 25 1 7.4302 7.5512 4.4521 26 7 8.3343 2.4896 3.0991 27 6 3.7805 -1.4115 -0.6160 28 16 2.1933 -0.9650 -1.4190 29 1 -0.3633 -1.0265 0.0496 30 1 -0.3633 0.5562 0.8642 31 1 -0.3633 0.4703 -0.9137 32 1 1.4810 -1.7090 1.3430 33 1 2.0632 -0.2048 2.0954 34 1 4.1227 0.7330 1.4669 35 1 8.1580 -0.6838 2.6206 36 1 10.4322 -0.1012 3.1764 37 1 12.0122 1.6911 3.8467 38 1 11.1722 4.0186 4.0305 39 1 5.5807 4.2782 2.7465 40 1 4.5762 -0.7479 -0.9544 41 1 4.0367 -2.4491 -0.8301 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890326984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:14 Heat of formation + Delta-G solvation = -29.313861 kcal Electronic energy + Delta-G solvation = -26291.341404 eV Core-core repulsion = 22490.536302 eV Total energy + Delta-G solvation = -3800.805102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.81973 -40.45088 -39.07110 -38.01593 -36.13647 -35.02885 -34.47708 -32.27795 -31.84903 -31.05914 -27.94487 -27.66909 -26.31015 -24.16294 -23.44304 -22.86831 -21.40107 -21.20627 -20.00963 -18.90358 -18.26793 -17.77131 -17.44585 -16.90859 -16.47222 -16.38036 -16.29121 -15.90730 -15.65375 -15.48698 -15.03212 -14.95802 -14.67191 -14.54003 -13.88467 -13.77327 -13.65588 -13.30036 -13.06659 -12.88866 -12.74823 -12.72644 -12.57400 -12.52133 -12.31694 -12.19129 -11.88212 -11.76477 -11.60645 -11.12727 -10.92127 -10.62919 -10.35719 -9.93894 -9.20920 -8.92600 -8.79497 -8.09351 -6.42904 0.34081 0.74977 1.01556 1.22830 1.26835 1.38351 1.42980 1.53311 1.56314 2.27559 2.35414 2.62289 2.97722 3.33344 3.46250 3.55388 3.78408 3.97390 4.01085 4.04788 4.27101 4.32360 4.46878 4.61527 4.67080 4.69873 4.81327 4.82703 4.89947 4.93958 4.98247 4.99532 5.15554 5.25832 5.26394 5.62558 5.70270 5.88918 5.94788 6.13395 6.28120 6.52689 6.68904 6.81313 7.03675 7.28067 8.24331 8.55080 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012403 B = 0.003445 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.042607 B = 8125.189914 C =10008.845560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.033 4.033 3 H 0.096 0.904 4 C -0.124 4.124 5 C 0.141 3.859 6 H 0.110 0.890 7 N -0.688 5.688 8 C 0.523 3.477 9 O -0.538 6.538 10 C 0.459 3.541 11 O -0.419 6.419 12 N -0.633 5.633 13 C 0.347 3.653 14 C -0.343 4.343 15 C -0.033 4.033 16 C -0.322 4.322 17 C 0.237 3.763 18 C -0.461 4.461 19 H 0.086 0.914 20 C 0.016 3.984 21 N -0.693 5.693 22 Si 0.975 3.025 23 H -0.268 1.268 24 H -0.270 1.270 25 H -0.259 1.259 26 N -0.505 5.505 27 C -0.072 4.072 28 S -0.326 6.326 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.417 0.583 35 H 0.424 0.576 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.274 0.726 40 H 0.079 0.921 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.307 -9.374 -3.612 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.161 4.161 3 H 0.115 0.885 4 C -0.163 4.163 5 C 0.036 3.964 6 H 0.128 0.872 7 N -0.342 5.342 8 C 0.304 3.696 9 O -0.416 6.416 10 C 0.237 3.763 11 O -0.284 6.284 12 N -0.282 5.282 13 C 0.109 3.891 14 C -0.368 4.368 15 C -0.057 4.057 16 C -0.345 4.345 17 C 0.111 3.889 18 C -0.492 4.492 19 H 0.105 0.895 20 C -0.210 4.210 21 N -0.313 5.313 22 Si 0.796 3.204 23 H -0.193 1.193 24 H -0.194 1.194 25 H -0.183 1.183 26 N -0.225 5.225 27 C -0.222 4.222 28 S -0.100 6.100 29 H 0.092 0.908 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.255 0.745 35 H 0.263 0.737 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.952 -9.471 -4.995 17.587 hybrid contribution 1.557 0.735 1.109 2.048 sum -12.394 -8.736 -3.886 15.653 Atomic orbital electron populations 1.21623 0.89824 1.03859 1.03358 1.24228 1.00586 1.00113 0.91184 0.88525 1.22746 0.92172 1.02563 0.98800 1.21801 0.89721 0.92585 0.92329 0.87244 1.46029 1.10798 1.13946 1.63397 1.20116 0.83544 0.87881 0.78096 1.90705 1.75832 1.20821 1.54227 1.20757 0.83884 0.89781 0.81902 1.91214 1.73215 1.18949 1.44980 1.42979 1.10403 1.10067 1.64799 1.18996 0.87392 0.89036 0.93664 1.20961 0.92735 1.00582 1.22549 1.21044 0.98857 0.91903 0.93944 1.21852 0.97169 0.97514 1.18002 1.18850 0.88504 0.92871 0.88630 1.19916 0.95798 0.92923 1.40569 0.89544 1.26957 0.97216 1.02585 0.94221 1.70444 1.04725 1.32838 1.23262 0.85327 0.77999 0.77709 0.79380 1.19292 1.19413 1.18267 1.68599 1.35628 0.97170 1.21109 1.24393 0.96273 1.05914 0.95585 1.88031 1.22124 1.69338 1.30549 0.90766 0.89226 0.92095 0.86611 0.87661 0.74549 0.73741 0.85276 0.84361 0.87424 0.91488 0.90196 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 9.42 71.98 0.68 -0.75 16 2 C -0.03 -0.49 3.94 31.28 0.12 -0.37 16 3 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 4 C -0.12 -1.63 5.31 31.26 0.17 -1.47 16 5 C 0.14 2.63 2.96 45.21 0.13 2.77 16 6 H 0.11 2.08 7.52 -2.39 -0.02 2.07 16 7 N -0.69 -16.70 4.80 -442.92 -2.12 -18.83 16 8 C 0.52 16.40 7.83 87.24 0.68 17.08 16 9 O -0.54 -17.56 16.12 -3.28 -0.05 -17.61 16 10 C 0.46 18.32 7.84 87.24 0.68 19.01 16 11 O -0.42 -19.71 12.24 -3.28 -0.04 -19.75 16 12 N -0.63 -25.46 5.37 -309.70 -1.66 -27.13 16 13 C 0.35 16.70 7.43 133.30 0.99 17.69 16 14 C -0.34 -14.68 9.95 22.72 0.23 -14.46 16 15 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 16 C -0.32 -15.87 9.83 22.87 0.22 -15.65 16 17 C 0.24 13.26 6.55 40.20 0.26 13.52 16 18 C -0.46 -25.26 9.14 23.47 0.21 -25.05 16 19 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 20 C 0.02 0.81 5.50 85.29 0.47 1.28 16 21 N -0.69 -37.13 8.99 21.84 0.20 -36.94 16 22 Si 0.97 38.45 29.56 68.60 2.03 40.48 16 23 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 24 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 N -0.51 -28.09 5.73 -186.43 -1.07 -29.16 16 27 C -0.07 -1.49 7.09 72.22 0.51 -0.98 16 28 S -0.33 -6.66 22.71 -56.49 -1.28 -7.94 16 29 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.12 1.16 8.01 -2.39 -0.02 1.14 16 33 H 0.11 1.25 8.00 -2.39 -0.02 1.23 16 34 H 0.42 10.05 8.06 -92.71 -0.75 9.31 16 35 H 0.42 14.24 8.18 -92.71 -0.76 13.48 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 38 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 39 H 0.27 13.49 8.29 -92.71 -0.77 12.72 16 40 H 0.08 1.94 7.88 -2.39 -0.02 1.92 16 41 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -68.61 358.40 1.17 -67.44 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: -0.42 Total: 37.99 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 5.60 Total: 11.44 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -4.66 Total: -112.05 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.09 Total: -37.36 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 16 Polarization: -6.66 SS G_CDS: -1.28 Total: -7.94 kcal Total: -68.61 1.17 -67.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890326984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.125 kcal (2) G-P(sol) polarization free energy of solvation -68.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds