Wall clock time and date at job start Tue Mar 31 2020 19:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.69439 * 2 1 4 4 S 1.83949 * 110.95176 * 236.56969 * 2 1 3 5 5 C 1.83773 * 94.74379 * 207.08825 * 4 2 1 6 6 C 1.54259 * 102.66575 * 34.62727 * 5 4 2 7 7 C 1.52333 * 112.47703 * 335.33034 * 6 5 4 8 8 H 1.09003 * 108.87149 * 120.74614 * 7 6 5 9 9 N 1.46505 * 108.86797 * 239.25171 * 7 6 5 10 10 C 1.34779 * 119.99662 * 273.54621 * 9 7 6 11 11 O 1.21359 * 120.00331 * 359.97438 * 10 9 7 12 12 C 1.49363 * 119.99331 * 179.97438 * 10 9 7 13 13 O 1.21349 * 120.00758 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99618 * 180.02562 * 12 10 9 15 15 C 1.39115 * 120.00052 * 174.85941 * 14 12 10 16 16 C 1.39705 * 119.57846 * 185.38630 * 15 14 12 17 17 C 1.38650 * 119.49332 * 179.76668 * 16 15 14 18 18 C 1.38349 * 118.67266 * 0.49229 * 17 16 15 19 19 C 1.40601 * 119.13147 * 359.74901 * 18 17 16 20 20 C 1.41338 * 119.77883 * 180.02562 * 19 18 17 21 21 H 1.07992 * 120.00299 * 359.97438 * 20 19 18 22 22 C 1.40034 * 119.99509 * 179.97438 * 20 19 18 23 23 N 1.30748 * 120.00101 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00018 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47062 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46801 * 120.00198 * 24 22 20 27 27 H 1.48499 * 109.47288 * 240.00192 * 24 22 20 28 28 N 1.31941 * 119.57824 * 5.65004 * 15 14 12 29 29 H 1.09001 * 109.47163 * 296.68382 * 1 2 3 30 30 H 1.08997 * 109.47084 * 56.69280 * 1 2 3 31 31 H 1.09010 * 109.46762 * 176.68765 * 1 2 3 32 32 H 1.08999 * 110.80511 * 276.29948 * 5 4 2 33 33 H 1.08993 * 110.68274 * 152.90342 * 5 4 2 34 34 H 1.08997 * 108.86794 * 214.58056 * 6 5 4 35 35 H 1.08998 * 108.86519 * 96.07573 * 6 5 4 36 36 H 0.96996 * 120.00084 * 93.54481 * 9 7 6 37 37 H 0.97003 * 119.99928 * 354.84608 * 14 12 10 38 38 H 1.08001 * 120.25171 * 359.97438 * 16 15 14 39 39 H 1.08005 * 120.66606 * 180.24842 * 17 16 15 40 40 H 1.07997 * 120.43442 * 179.77737 * 18 17 16 41 41 H 0.96997 * 120.00021 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9153 1.0197 0.0000 4 16 2.1878 -0.9464 -1.4337 5 6 3.7649 -1.3994 -0.6061 6 6 3.3353 -1.5809 0.8643 7 6 2.0775 -0.7920 1.2052 8 1 1.3088 -1.4847 1.5477 9 7 2.3853 0.1457 2.2880 10 6 2.3002 -0.2559 3.5717 11 8 1.9681 -1.3941 3.8307 12 6 2.6145 0.7000 4.6756 13 8 2.9461 1.8382 4.4167 14 7 2.5299 0.2982 5.9593 15 6 2.9247 1.1532 6.9832 16 6 2.9405 0.6898 8.3011 17 6 3.3389 1.5420 9.3196 18 6 3.7014 2.8377 8.9973 19 6 3.6595 3.2458 7.6525 20 6 4.0275 4.5662 7.3078 21 1 4.3391 5.2580 8.0762 22 6 3.9879 4.9773 5.9697 23 7 3.6102 4.1398 5.0394 24 14 4.4735 6.7225 5.5141 25 1 4.8585 7.4655 6.7408 26 1 5.6240 6.6872 4.5757 27 1 3.3246 7.4021 4.8633 28 7 3.2745 2.3930 6.6979 29 1 -0.3633 0.4615 0.9182 30 1 -0.3633 0.5643 -0.8588 31 1 -0.3633 -1.0261 -0.0594 32 1 4.4957 -0.5960 -0.6992 33 1 4.1588 -2.3311 -1.0119 34 1 4.1464 -1.2484 1.5121 35 1 3.1487 -2.6388 1.0490 36 1 2.6504 1.0555 2.0810 37 1 2.1934 -0.5870 6.1693 38 1 2.6477 -0.3255 8.5244 39 1 3.3621 1.2024 10.3446 40 1 4.0129 3.5265 9.7685 41 1 3.5825 4.4247 4.1126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890354973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:17 Heat of formation + Delta-G solvation = -27.609002 kcal Electronic energy + Delta-G solvation = -26397.445511 eV Core-core repulsion = 22596.714337 eV Total energy + Delta-G solvation = -3800.731174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82725 -40.46670 -39.08803 -38.01898 -36.11629 -34.96306 -33.76830 -33.01678 -32.26855 -31.07986 -28.01753 -27.44183 -25.59851 -24.69223 -23.53346 -22.89037 -21.43893 -21.15528 -19.97453 -18.87245 -18.36396 -17.84112 -17.36348 -16.86130 -16.55822 -16.44419 -16.28894 -15.78526 -15.56427 -15.22816 -15.14592 -15.05440 -14.67432 -14.39974 -14.19528 -13.89839 -13.77104 -13.23519 -13.08720 -12.89895 -12.74575 -12.71120 -12.55786 -12.52648 -12.32071 -12.17968 -11.91750 -11.73984 -11.61091 -11.03486 -10.92339 -10.61576 -10.41587 -9.93558 -9.20641 -8.92163 -8.81993 -8.09327 -6.42573 0.34968 0.67750 1.01013 1.13836 1.27480 1.43329 1.46657 1.53869 1.56502 2.27606 2.36438 2.64666 2.97872 3.13111 3.47809 3.68818 3.73621 3.92719 4.01445 4.03328 4.20736 4.32841 4.45313 4.66979 4.68051 4.69996 4.77747 4.81696 4.82961 4.94393 4.95197 4.98890 5.11548 5.20067 5.26809 5.62990 5.70744 5.89406 5.95281 6.13974 6.28560 6.53285 6.69504 6.81940 7.04101 7.28626 8.24736 8.55168 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.003342 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.056792 B = 8377.026503 C = 9935.182449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.038 4.038 3 H 0.109 0.891 4 S -0.305 6.305 5 C -0.056 4.056 6 C -0.137 4.137 7 C 0.145 3.855 8 H 0.101 0.899 9 N -0.686 5.686 10 C 0.524 3.476 11 O -0.539 6.539 12 C 0.460 3.540 13 O -0.419 6.419 14 N -0.633 5.633 15 C 0.347 3.653 16 C -0.342 4.342 17 C -0.034 4.034 18 C -0.322 4.322 19 C 0.237 3.763 20 C -0.461 4.461 21 H 0.086 0.914 22 C 0.016 3.984 23 N -0.694 5.694 24 Si 0.975 3.025 25 H -0.258 1.258 26 H -0.270 1.270 27 H -0.270 1.270 28 N -0.505 5.505 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.417 0.583 37 H 0.424 0.576 38 H 0.129 0.871 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -9.057 -11.784 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 H 0.127 0.873 4 S -0.079 6.079 5 C -0.204 4.204 6 C -0.177 4.177 7 C 0.039 3.961 8 H 0.119 0.881 9 N -0.340 5.340 10 C 0.305 3.695 11 O -0.417 6.417 12 C 0.238 3.762 13 O -0.283 6.283 14 N -0.283 5.283 15 C 0.109 3.891 16 C -0.368 4.368 17 C -0.058 4.058 18 C -0.345 4.345 19 C 0.112 3.888 20 C -0.492 4.492 21 H 0.104 0.896 22 C -0.209 4.209 23 N -0.313 5.313 24 Si 0.796 3.204 25 H -0.181 1.181 26 H -0.195 1.195 27 H -0.195 1.195 28 N -0.225 5.225 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.255 0.745 37 H 0.263 0.737 38 H 0.147 0.853 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.014 -9.016 -14.119 17.021 hybrid contribution 0.672 0.632 1.958 2.164 sum -2.341 -8.384 -12.161 14.956 Atomic orbital electron populations 1.21706 0.90299 1.03740 1.03339 1.24138 1.00577 1.01019 0.90939 0.87276 1.88160 1.23665 1.69743 1.26329 1.24163 0.95308 1.06386 0.94551 1.22402 0.96974 1.02317 0.96001 1.21966 0.97772 0.90731 0.85593 0.88131 1.45983 1.67288 1.16821 1.03904 1.20098 0.77809 0.87150 0.84486 1.90706 1.47009 1.19854 1.84100 1.20730 0.81998 0.88971 0.84513 1.91213 1.37737 1.17091 1.82305 1.42983 1.62993 1.18239 1.04045 1.18990 0.93799 0.90028 0.86239 1.20962 1.22175 1.02200 0.91438 1.21046 0.93598 0.92476 0.98639 1.21852 1.17441 0.98290 0.96931 1.18852 0.89013 0.93242 0.87732 1.19938 1.39106 0.95771 0.94336 0.89564 1.26955 0.94787 1.02845 0.96363 1.70453 1.25219 1.34559 1.01072 0.85271 0.78465 0.77599 0.79071 1.18117 1.19485 1.19481 1.68596 1.18983 1.00303 1.34617 0.90966 0.90602 0.90948 0.88229 0.85786 0.90417 0.89098 0.74482 0.73743 0.85264 0.84362 0.87440 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.20 71.98 0.66 -1.44 16 2 C -0.04 -0.65 3.56 31.02 0.11 -0.54 16 3 H 0.11 1.82 7.74 -2.39 -0.02 1.80 16 4 S -0.31 -5.55 22.74 -56.49 -1.28 -6.84 16 5 C -0.06 -0.82 7.45 72.41 0.54 -0.28 16 6 C -0.14 -2.40 6.09 30.80 0.19 -2.22 16 7 C 0.15 2.86 2.59 45.20 0.12 2.98 16 8 H 0.10 2.19 7.08 -2.39 -0.02 2.17 16 9 N -0.69 -16.76 4.78 -442.96 -2.12 -18.88 16 10 C 0.52 16.37 7.85 87.24 0.69 17.06 16 11 O -0.54 -17.62 16.08 -3.28 -0.05 -17.68 16 12 C 0.46 18.23 7.84 87.24 0.68 18.92 16 13 O -0.42 -19.58 12.24 -3.24 -0.04 -19.62 16 14 N -0.63 -25.28 5.37 -309.71 -1.66 -26.94 16 15 C 0.35 16.61 7.42 133.30 0.99 17.60 16 16 C -0.34 -14.56 9.95 22.72 0.23 -14.33 16 17 C -0.03 -1.43 10.15 22.39 0.23 -1.20 16 18 C -0.32 -15.78 9.83 22.87 0.22 -15.56 16 19 C 0.24 13.21 6.55 40.20 0.26 13.47 16 20 C -0.46 -25.15 9.14 23.47 0.21 -24.93 16 21 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 22 C 0.02 0.82 5.50 85.29 0.47 1.29 16 23 N -0.69 -37.07 8.99 21.84 0.20 -36.88 16 24 Si 0.97 38.44 29.56 68.60 2.03 40.47 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 27 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 28 N -0.51 -27.95 5.74 -186.42 -1.07 -29.02 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.52 7.79 -2.39 -0.02 1.50 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.42 10.06 7.84 -92.71 -0.73 9.33 16 37 H 0.42 14.13 8.18 -92.71 -0.76 13.37 16 38 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.14 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 41 H 0.27 13.44 8.29 -92.71 -0.77 12.67 16 Total: -1.00 -67.22 357.75 1.20 -66.02 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.40 Total: 38.54 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 5.60 Total: 10.83 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.65 Total: -111.72 kcal Atomic # 8 Polarization: -37.21 SS G_CDS: -0.09 Total: -37.30 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: -5.55 SS G_CDS: -1.28 Total: -6.84 kcal Total: -67.22 1.20 -66.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890354973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.411 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds